# TARGET T0300 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0300.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.85162 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.011 0.005 0.019 0.368 0.090 0.508 2 A 0.014 0.013 0.025 0.275 0.140 0.533 3 S 0.009 0.008 0.019 0.071 0.193 0.700 4 K 0.006 0.009 0.011 0.026 0.228 0.720 5 K 0.010 0.009 0.028 0.018 0.569 0.366 6 P 0.008 0.004 0.041 0.021 0.635 0.290 7 D 0.015 0.009 0.040 0.025 0.539 0.371 8 K 0.051 0.043 0.006 0.012 0.369 0.519 9 T 0.021 0.019 0.001 0.011 0.039 0.909 10 Y 0.001 0.001 0.005 0.978 0.007 0.009 11 E 0.001 0.001 0.004 0.989 0.004 0.002 12 E 0.001 0.001 0.004 0.989 0.005 0.001 13 M 0.001 0.001 0.002 0.994 0.002 0.002 14 V 0.001 0.001 0.001 0.997 0.001 0.001 15 K 0.001 0.001 0.001 0.995 0.002 0.001 16 E 0.001 0.001 0.002 0.990 0.004 0.004 17 V 0.001 0.001 0.002 0.989 0.006 0.002 18 E 0.001 0.001 0.004 0.985 0.007 0.003 19 R 0.001 0.001 0.003 0.988 0.005 0.004 20 L 0.001 0.001 0.002 0.986 0.005 0.006 21 K 0.001 0.001 0.002 0.984 0.006 0.007 22 L 0.001 0.001 0.005 0.984 0.007 0.003 23 E 0.001 0.001 0.004 0.982 0.009 0.004 24 N 0.001 0.001 0.002 0.983 0.009 0.005 25 K 0.001 0.001 0.001 0.994 0.003 0.001 26 T 0.001 0.001 0.001 0.995 0.003 0.001 27 L 0.001 0.001 0.002 0.993 0.003 0.001 28 K 0.001 0.001 0.002 0.993 0.004 0.001 29 Q 0.001 0.001 0.003 0.991 0.004 0.002 30 K 0.001 0.001 0.003 0.987 0.005 0.004 31 V 0.001 0.001 0.005 0.982 0.008 0.004 32 K 0.001 0.001 0.004 0.968 0.019 0.007 33 S 0.001 0.001 0.006 0.899 0.048 0.044 34 S 0.002 0.002 0.014 0.280 0.242 0.460 35 G 0.004 0.004 0.021 0.028 0.366 0.576 36 A 0.023 0.022 0.033 0.009 0.454 0.459 37 V 0.030 0.052 0.029 0.013 0.366 0.511 38 S 0.022 0.035 0.014 0.012 0.340 0.576 39 S 0.013 0.012 0.015 0.020 0.371 0.570 40 D 0.012 0.010 0.038 0.057 0.439 0.445 41 D 0.017 0.009 0.166 0.082 0.506 0.222 42 S 0.033 0.011 0.196 0.079 0.437 0.244 43 I 0.062 0.044 0.101 0.064 0.307 0.422 44 L 0.032 0.042 0.010 0.043 0.159 0.715 45 T 0.012 0.007 0.001 0.018 0.070 0.891 46 A 0.001 0.001 0.009 0.971 0.012 0.007 47 A 0.001 0.001 0.012 0.967 0.017 0.004 48 K 0.001 0.001 0.011 0.978 0.009 0.002 49 R 0.001 0.001 0.004 0.988 0.004 0.003 50 E 0.001 0.001 0.002 0.991 0.003 0.003 51 S 0.001 0.001 0.002 0.992 0.003 0.002 52 I 0.001 0.001 0.002 0.994 0.002 0.001 53 I 0.001 0.001 0.001 0.996 0.001 0.001 54 V 0.001 0.001 0.002 0.992 0.004 0.001 55 S 0.001 0.001 0.004 0.983 0.008 0.003 56 S 0.001 0.001 0.007 0.977 0.009 0.006 57 S 0.001 0.001 0.008 0.975 0.009 0.007 58 R 0.001 0.001 0.012 0.965 0.014 0.008 59 A 0.001 0.001 0.014 0.952 0.019 0.014 60 L 0.001 0.001 0.012 0.952 0.018 0.017 61 G 0.001 0.001 0.010 0.936 0.026 0.027 62 A 0.001 0.001 0.006 0.979 0.009 0.005 63 V 0.001 0.001 0.005 0.987 0.005 0.003 64 A 0.001 0.001 0.002 0.990 0.004 0.003 65 M 0.001 0.001 0.001 0.994 0.002 0.002 66 R 0.001 0.001 0.002 0.993 0.003 0.002 67 K 0.001 0.001 0.002 0.989 0.005 0.004 68 I 0.001 0.001 0.002 0.992 0.003 0.003 69 E 0.001 0.001 0.002 0.992 0.003 0.002 70 A 0.001 0.001 0.003 0.986 0.006 0.003 71 K 0.001 0.001 0.003 0.979 0.008 0.008 72 V 0.001 0.001 0.003 0.979 0.008 0.009 73 R 0.001 0.001 0.006 0.964 0.013 0.014 74 S 0.002 0.001 0.009 0.930 0.030 0.029 75 R 0.003 0.001 0.017 0.862 0.065 0.053 76 A 0.004 0.002 0.017 0.813 0.083 0.081 77 A 0.016 0.003 0.057 0.583 0.188 0.153 78 K 0.020 0.002 0.060 0.424 0.230 0.264 79 A 0.049 0.010 0.040 0.220 0.211 0.471 80 V 0.039 0.019 0.007 0.096 0.159 0.681 81 T 0.017 0.009 0.001 0.061 0.050 0.862 82 E 0.001 0.001 0.004 0.989 0.003 0.003 83 Q 0.001 0.001 0.010 0.983 0.005 0.002 84 E 0.001 0.001 0.009 0.982 0.007 0.001 85 L 0.001 0.001 0.003 0.989 0.004 0.004 86 T 0.001 0.001 0.002 0.989 0.004 0.004 87 S 0.001 0.001 0.005 0.972 0.014 0.007 88 L 0.002 0.001 0.011 0.953 0.022 0.012 89 L 0.013 0.003 0.039 0.868 0.067 0.009 90 Q 0.019 0.001 0.074 0.759 0.124 0.023 91 S 0.032 0.001 0.042 0.511 0.165 0.250 92 L 0.168 0.007 0.010 0.090 0.177 0.548 93 T 0.563 0.003 0.001 0.009 0.061 0.363 94 L 0.888 0.002 0.001 0.003 0.016 0.091 95 R 0.967 0.001 0.001 0.001 0.007 0.025 96 V 0.959 0.001 0.001 0.001 0.006 0.033 97 D 0.933 0.001 0.001 0.001 0.014 0.051 98 V 0.851 0.003 0.002 0.002 0.028 0.113 99 S 0.527 0.007 0.004 0.003 0.093 0.366 100 M 0.220 0.008 0.010 0.006 0.156 0.601 101 E 0.067 0.007 0.005 0.009 0.131 0.781 102 E 0.025 0.003 0.003 0.026 0.119 0.824