# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1debA 54 3.30e-01 1debA h.1.18.1 45660 1pb6A 212 7.48e-01 a.4.1.9,a.121.1.1 88017,88018 1v54F 98 1.44e+00 g.41.5.3 100327 1l8dA 112 2.28e+00 h.4.12.1 73687 1fmhA 33 2.47e+00 1fmhB k.6.1.1 46409 1p65A 73 2.47e+00 d.254.1.1 94156 1ns5A 155 2.95e+00 c.116.1.3 80705 1h99A 224 3.66e+00 a.142.1.1,a.142.1.1 60814,60815 1t7rA 269 4.07e+00 a.123.1.1 106635 1nh1A 330 4.98e+00 e.45.1.1 91871 1p9iA 31 5.01e+00 h.1.10.1 94390 1m12A 84 5.01e+00 a.64.1.1 84745 1y0uA 96 5.32e+00 1f45B 197 5.56e+00 1f45B a.26.1.1 59642 1vkeA 133 5.96e+00 a.152.1.2 108650 1o6zA 303 6.00e+00 c.2.1.5,d.162.1.1 81107,81108 1w6uA 302 6.04e+00 1pmi 440 6.23e+00 1pmi b.82.1.3 28114 1qgtA 149 6.59e+00 1qgtA a.62.1.1 18135 1wdpA 495 6.66e+00 1m4iA 181 6.88e+00 d.108.1.1 74457 1ihoA 283 6.88e+00 1ihoA c.26.1.4 62390 1oqcA 125 7.47e+00 a.24.15.1 87264 1e3dB 542 7.72e+00 1h2rL e.18.1.1 59189 1gwiA 411 8.42e+00 a.104.1.1 76364 1fmhB 33 8.46e+00 1fmhB k.6.1.1 46410 1ummA 172 8.47e+00 a.3.1.1 107958 1iomA 377 8.75e+00 a.103.1.1 83698 1ffyA 917 8.76e+00 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1hl9A 449 8.96e+00 b.71.1.3,c.1.8.11 90650,90651 1mwmA 320 9.27e+00 c.55.1.1,c.55.1.1 79580,79581 1gotB 340 9.60e+00 1tbgA b.69.4.1 27648 1mtyB 384 9.83e+00 1mtyB a.25.1.2 16740 1e5pA 151 9.92e+00 1bj7 b.60.1.1 59272 1q5dA 419 9.94e+00 a.104.1.1 95891 1bcpB 199 1.09e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1sedA 117 1.09e+01 a.219.1.1 105449 1ehyA 294 1.21e+01 1ehyA c.69.1.11 34693 1n2eA 300 1.24e+01 c.26.1.4 85268 1qo7A 394 1.25e+01 1qo7A c.69.1.11 34697 1h2sA 225 1.25e+01 f.13.1.1 76578 1a8s 273 1.26e+01 1brt c.69.1.12 34710 2lisA 136 1.30e+01 1lis a.19.1.1 16405 1q1vA 70 1.30e+01 a.159.4.1 104479 1qkkA 155 1.33e+01 1dbwA c.23.1.1 31104 1bgc 174 1.37e+01 1bgc a.26.1.1 16822 1lml 478 1.39e+01 1lml d.92.1.3 40295 1cpt 412 1.41e+01 1cpt a.104.1.1 18968 1pwxA 254 1.41e+01 c.2.1.2 95262 1d2vC 466 1.44e+01 1mhlC 1sb0A 87 1.44e+01 a.12.1.1 98789 1pea 385 1.47e+01 1pea c.93.1.1 35662 1mc2A 122 1.51e+01 a.133.1.2 74622 1ad1A 266 1.52e+01 1aj2 c.1.21.1 29668 1y8aA 332 1.54e+01 1a6jA 163 1.54e+01 1a6jA d.112.1.1 40915 1r3dA 264 1.62e+01 1fxxA 482 1.64e+01 1fxxA c.55.3.5 33726 1uuqA 440 1.72e+01 c.1.8.3 100015 1dowA 205 1.75e+01 1dovA a.24.9.1 16626 1chuA 540 1.77e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1jmtB 28 1.78e+01 1ofwA 296 1.80e+01 a.138.1.1 92850 1j8bA 112 1.84e+01 d.222.1.1 77101 1w4xA 542 1.85e+01 c.3.1.5,c.3.1.5 109171,109172 1egwA 77 1.86e+01 1mnmA d.88.1.1 40234 1l6xB 34 1.94e+01 k.13.1.1 73644 1ls9A 91 1.96e+01 a.3.1.1 78177 1dofA 403 1.96e+01 1c3cA a.127.1.1 19429 1obdA 306 1.98e+01 d.143.1.1 86767 1f5vA 240 2.01e+01 1bkjA d.90.1.1 40255 1ugpA 203 2.02e+01 d.149.1.1 107831 1scfA 273 2.07e+01 1exzA a.26.1.2 16873 1bf6A 291 2.12e+01 1pscA c.1.9.3 29065 1pu6A 218 2.14e+01 a.96.1.5 95123 1s14A 194 2.18e+01 d.122.1.2 98329 1o3uA 135 2.19e+01 a.24.16.3 86615 1qwoA 442 2.23e+01 c.60.1.2 104620 1qkmA 255 2.28e+01 3erdA a.123.1.1 19309 1vhnA 318 2.44e+01 c.1.4.1 100693 1p80A 753 2.49e+01 c.23.16.3,e.5.1.1 94337,94338 1a8q 274 2.50e+01 1brt c.69.1.12 34702 1a8rA 221 2.52e+01 1a8rA d.96.1.1 40587 1n1jB 97 2.57e+01 a.22.1.3 79814 1cb8A 678 2.59e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1hm6A 346 2.61e+01 1avc a.65.1.1 18147 1cq3A 233 2.64e+01 1cq3A b.27.1.1 23923 1qnxA 209 2.65e+01 1qnxA d.111.1.1 40914 1s5lU 134 2.71e+01 1hleA 345 2.71e+01 1ovaA e.1.1.1 42618 1ihjA 98 2.71e+01 1pdr b.36.1.1 62382 1ubkL 534 2.77e+01 e.18.1.1 88422 1ldjA 760 2.82e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1lm4A 194 2.87e+01 d.167.1.1 84626 1gotG 73 2.87e+01 1tbgE a.137.3.1 19629 1sg6A 393 2.87e+01 e.22.1.1 105522 1bw0A 416 2.91e+01 1bw0A c.67.1.1 34385 1sx7A 164 3.09e+01 1r4gA 53 3.16e+01 a.8.5.1 96996 1jq5A 370 3.17e+01 e.22.1.2 67084 1oe8A 211 3.17e+01 a.45.1.1,c.47.1.5 86905,86906 1ljoA 77 3.20e+01 b.38.1.1 73941 2bjfA 329 3.21e+01 1b9hA 388 3.24e+01 1b9hA c.67.1.4 34488 1jdlA 121 3.24e+01 a.3.1.1 66557 1reqB 637 3.25e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1t3uA 104 3.26e+01 d.244.1.1 99120 1o4sA 389 3.32e+01 c.67.1.1 86620 1euhA 475 3.33e+01 1euhA c.82.1.1 35369 1f1eA 154 3.43e+01 a.22.1.2 64927 1sh0A 510 3.46e+01 e.8.1.4 98876 1td6A 306 3.49e+01 1a93B 34 3.52e+01 1a93B h.1.3.1 45545 1qwlA 505 3.58e+01 e.5.1.1 96483 1k32A 1045 3.58e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1vk5A 157 3.59e+01 a.220.1.1 108635 1pueE 89 3.60e+01 1awcA a.4.5.21 16165 1oxxK 353 3.63e+01 b.40.6.3,c.37.1.12 93715,93716 1aj8A 371 3.66e+01 1aj8A a.103.1.1 18900 2gq1A 332 3.68e+01 1w6sB 74 3.72e+01 1sgwA 214 3.73e+01 c.37.1.12 105541 1ovnA 248 3.75e+01 a.71.1.1,c.47.1.7 93602,93603 1dlwA 116 3.75e+01 1dlyA a.1.1.1 14982 1ru0A 105 3.77e+01 1eyvA 156 3.78e+01 1eyvA a.79.1.1 18446 1mtpA 323 3.78e+01 e.1.1.1 85107 1t3iA 420 3.83e+01 c.67.1.3 106354 1m4rA 151 3.86e+01 a.26.1.3 84799 19hcA 292 3.87e+01 19hcA a.138.1.1 19668 1t0fA 276 3.92e+01 1r2zA 274 3.92e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2ck3A 510 3.94e+01 1otfA 62 3.95e+01 1otfA d.80.1.1 39820 1q8bA 105 3.97e+01 d.58.4.6 96201 2ilk 160 3.98e+01 2ilk a.26.1.3 16885 2fcwA 109 4.00e+01 1a3aA 148 4.10e+01 1a3aA d.112.1.1 40917 1n1jA 93 4.11e+01 a.22.1.3 79813 1s9rA 410 4.17e+01 d.126.1.4 98758 1ug6A 431 4.17e+01 c.1.8.4 88490 2pvbA 107 4.18e+01 1a75A a.39.1.4 17205 1m93A 55 4.21e+01 e.1.1.1 91235 2gnxA 365 4.21e+01 1t2bA 397 4.21e+01 1h21A 247 4.22e+01 a.138.1.3 76510 1q3eA 207 4.25e+01 b.82.3.2 95669 1h8eA 510 4.27e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1khcA 147 4.32e+01 b.34.9.2 68608 1bouA 139 4.35e+01 1bouA a.88.1.1 18521 1e1hA 287 4.37e+01 d.92.1.7 83167 1g55A 343 4.38e+01 1g55A c.66.1.26 34247 1qamA 244 4.39e+01 2ercA c.66.1.24 34220 1qyiA 384 4.42e+01 c.108.1.13 96595 1t6fA 37 4.45e+01 h.1.28.1 106565 1hyvA 166 4.51e+01 1b9dA c.55.3.2 61424 1onrA 316 4.52e+01 1onrA c.1.10.1 29169 1j1iA 296 4.52e+01 c.69.1.10 83977 1sauA 115 4.52e+01 1oohA 126 4.54e+01 a.39.2.1 93383 1knwA 425 4.57e+01 b.49.2.3,c.1.6.1 90969,90970 1nfvA 179 4.61e+01 a.25.1.1 85642 1k0dA 260 4.77e+01 a.45.1.1,c.47.1.5 67930,67931 1o7jA 327 4.79e+01 c.88.1.1 81140 1rxqA 178 4.80e+01 a.213.1.1 105118 1g0oA 283 4.85e+01 1ybvA c.2.1.2 60181 1s5lX 50 4.86e+01 1eemA 241 4.92e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1jihA 531 4.97e+01 d.240.1.1,e.8.1.7 90374,90375 1fy7A 278 4.98e+01 1fy7A d.108.1.1 40817 1c7gA 456 5.00e+01 c.67.1.2 90415 1guuA 52 5.06e+01 a.4.1.3 83332 1r0dA 206 5.06e+01 a.216.1.1 104715 1cvrA 435 5.08e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1m0wA 491 5.23e+01 c.30.1.4,d.142.1.6 78363,78364 1rypC 244 5.26e+01 1rypC d.153.1.4 41934 1m56D 51 5.27e+01 f.23.8.1 74475 1iw0A 215 5.32e+01 a.132.1.1 83720 1kufA 203 5.34e+01 d.92.1.9 73007 1nogA 177 5.35e+01 a.25.2.2 85923 1ku3A 73 5.35e+01 a.4.13.2 73000 1ecmA 109 5.38e+01 1ecmA a.130.1.1 19492 1kugA 203 5.38e+01 d.92.1.9 73008 2d69A 430 5.40e+01 1qf8A 182 5.41e+01 1qf8A g.41.4.1 45212 1wddS 128 5.42e+01 1f0nA 285 5.47e+01 1dqyA c.69.1.3 34636 1w1oA 534 5.49e+01 d.58.32.4,d.145.1.1 109071,109072 1m1nA 491 5.55e+01 c.92.2.3 78417 1l9lA 74 5.56e+01 a.64.1.1 77827 1tbfA 347 5.58e+01 a.211.1.2 106743 1bjaA 95 5.58e+01 1bjaA a.4.5.9 16122 1rylA 167 5.62e+01 d.276.1.1 105124 1qo0D 196 5.68e+01 1qo0D c.23.1.3 31125 1i5pA 633 5.70e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1r5yA 386 5.76e+01 c.1.20.1 97134 1r5lA 262 5.76e+01 a.5.3.1,c.13.1.1 97099,97100 1kcfA 258 5.77e+01 a.140.2.1,c.55.3.7 68434,68435 1f6fA 199 5.81e+01 1f6fA a.26.1.1 16839 1o5kA 306 5.84e+01 c.1.10.1 92504 1ppo 216 5.93e+01 1cs8A d.3.1.1 37020 1n0uA 842 5.95e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1i9zA 347 6.02e+01 1i9yA d.151.1.2 62102 1xs0A 136 6.05e+01 1v37A 177 6.10e+01 1r3jC 124 6.14e+01 f.14.1.1 96932 1sqnA 261 6.21e+01 a.123.1.1 105944 1azsA 220 6.25e+01 1azsA d.58.29.1 39416 1otkA 249 6.38e+01 a.25.1.2 93521 1a4pA 96 6.38e+01 1b4cA a.39.1.2 17176 1sg0A 230 6.42e+01 1fgkA 310 6.60e+01 1fgkA d.144.1.7 41693 1jb0L 154 6.60e+01 1jb0L f.31.1.1 62829 1t5bA 201 6.65e+01 c.23.5.3 106433 1h5wA 309 6.74e+01 e.27.1.1 65635 1n4qB 377 6.77e+01 a.102.4.3 91636 1ejxA 100 6.81e+01 d.8.1.1 83182 1byyA 53 6.81e+01 j.12.1.1 46147 1fmjA 351 6.83e+01 c.37.1.5 59879 1a76 326 6.85e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1o2dA 371 6.87e+01 e.22.1.2 86591 1ik9A 213 6.88e+01 b.59.1.1,h.1.11.1 66176,66177 1g24A 211 6.93e+01 1g24A d.166.1.1 42270 1qsdA 106 6.99e+01 1qsdA a.7.5.1 16335 1msk 331 7.00e+01 1msk d.173.1.1 42495 1ekjA 221 7.10e+01 1ekjB c.53.2.1 33364 1khyA 148 7.11e+01 a.174.1.1 77410 1ctj 89 7.11e+01 1ctj a.3.1.1 15798 1ggzA 148 7.22e+01 a.39.1.5 70176 1fn9A 365 7.24e+01 1fn9A d.196.1.1 59894 1i8oA 114 7.26e+01 1ycc a.3.1.1 61979 1pvgA 418 7.32e+01 d.14.1.3,d.122.1.2 95161,95162 1na6A 404 7.33e+01 b.142.1.1,c.52.1.22 91748,91749 1ja1A 622 7.35e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1lucB 324 7.41e+01 1lucA c.1.16.1 29548 1jfxA 217 7.46e+01 c.1.8.8 62943 1oshA 232 7.49e+01 a.123.1.1 93496 1gw5A 621 7.56e+01 a.118.1.10 70629 1srqA 341 7.56e+01 e.55.1.1 105967 1qwgA 251 7.58e+01 c.1.27.1 96473 1r4vA 171 7.59e+01 a.197.1.1 97049 1eswA 500 7.65e+01 1cwyA c.1.8.1 59500 1n83A 270 7.69e+01 a.123.1.1 80276 1q44A 326 7.70e+01 c.37.1.5 95779 1lvoA 302 7.71e+01 b.47.1.4 74284 1fcqA 350 7.71e+01 c.1.8.9 65006 7odcA 424 7.72e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1oe4A 247 7.77e+01 c.18.1.3 86895 1sv6A 269 7.82e+01 d.177.1.1 106043 1kv5A 250 7.86e+01 c.1.1.1 73052 1qzzA 374 7.92e+01 a.4.5.29,c.66.1.12 96719,96720 1bkjA 240 7.96e+01 1bkjA d.90.1.1 40243 1h8eD 482 8.04e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1jhgA 101 8.05e+01 1jhgA a.4.12.1 19009 1kwfA 363 8.06e+01 a.102.1.2 73078 1j99A 293 8.07e+01 c.37.1.5 71618 2ck3D 482 8.07e+01 1b0nA 111 8.07e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1gpqA 135 8.11e+01 d.233.1.1 83295 1dj8A 89 8.15e+01 1bg8A a.57.1.1 17919 1junA 44 8.19e+01 1junA h.1.3.1 45540 1cp2A 269 8.21e+01 1cp2A c.37.1.10 32269 1ekeA 230 8.21e+01 1ekeA c.55.3.1 33572 2tpsA 227 8.25e+01 2tpsA c.1.3.1 28591 4ubpA 101 8.25e+01 1ubpA d.8.1.1 37352 1otjA 283 8.33e+01 b.82.2.5 93517 2gkpA 167 8.37e+01 1gpuA 680 8.41e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1idk 359 8.42e+01 1qcxA b.80.1.2 28025 1h5qA 265 8.43e+01 1cydA c.2.1.2 60643 1puc 105 8.45e+01 1puc d.97.1.1 40675 1qcxA 359 8.45e+01 1qcxA b.80.1.2 28028 1s7iA 124 8.53e+01 d.58.4.9 105353 1dcs 311 8.57e+01 1dcs b.82.2.1 28124 1khqA 212 8.58e+01 d.3.1.1 90964 1ja9A 274 8.71e+01 c.2.1.2 62817 1fiuA 286 8.76e+01 1fiuA c.52.1.10 33317 1fseA 74 8.76e+01 1fseA a.4.6.2 60000 1othA 321 8.81e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1f1mA 164 8.84e+01 1ggqA a.24.12.1 59598 1m0uA 249 8.93e+01 a.45.1.1,c.47.1.5 78359,78360 1gxyA 226 8.95e+01 d.166.1.3 76380