# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pb6A 212 9.08e-02 a.4.1.9,a.121.1.1 88017,88018 1debA 54 1.12e-01 1debA h.1.18.1 45660 1l8dA 112 9.61e-01 h.4.12.1 73687 1fmhA 33 1.13e+00 1fmhB k.6.1.1 46409 1nh1A 330 1.22e+00 e.45.1.1 91871 1h99A 224 1.60e+00 a.142.1.1,a.142.1.1 60814,60815 1pmi 440 2.46e+00 1pmi b.82.1.3 28114 1p9iA 31 3.30e+00 h.1.10.1 94390 1syyA 346 3.57e+00 a.25.1.2 106126 1f45B 197 3.78e+00 1f45B a.26.1.1 59642 1mwmA 320 3.88e+00 c.55.1.1,c.55.1.1 79580,79581 1m12A 84 4.43e+00 a.64.1.1 84745 1d2vC 466 4.48e+00 1mhlC 1m4iA 181 4.76e+00 d.108.1.1 74457 1qgtA 149 4.92e+00 1qgtA a.62.1.1 18135 1ehyA 294 5.21e+00 1ehyA c.69.1.11 34693 1qkmA 255 5.24e+00 3erdA a.123.1.1 19309 1oqcA 125 5.46e+00 a.24.15.1 87264 1p65A 73 6.13e+00 d.254.1.1 94156 1fmhB 33 6.27e+00 1fmhB k.6.1.1 46410 1v54F 98 6.95e+00 g.41.5.3 100327 1ns5A 155 7.07e+00 c.116.1.3 80705 1gotB 340 7.38e+00 1tbgA b.69.4.1 27648 1ummA 172 7.50e+00 a.3.1.1 107958 1qkkA 155 8.08e+00 1dbwA c.23.1.1 31104 1ffyA 917 8.11e+00 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1hl9A 449 8.24e+00 b.71.1.3,c.1.8.11 90650,90651 1h2sA 225 8.35e+00 f.13.1.1 76578 2fcwA 109 8.96e+00 1jihA 531 9.06e+00 d.240.1.1,e.8.1.7 90374,90375 1y0uA 96 9.42e+00 1ymtA 246 9.50e+00 1gwiA 411 9.89e+00 a.104.1.1 76364 1w4xA 542 1.03e+01 c.3.1.5,c.3.1.5 109171,109172 1q1vA 70 1.04e+01 a.159.4.1 104479 1tw9A 206 1.05e+01 a.45.1.1,c.47.1.5 107381,107382 1e5pA 151 1.07e+01 1bj7 b.60.1.1 59272 1t6sA 162 1.08e+01 1obdA 306 1.12e+01 d.143.1.1 86767 1a8s 273 1.17e+01 1brt c.69.1.12 34710 1nd9A 49 1.19e+01 a.6.1.6 85575 1mc2A 122 1.27e+01 a.133.1.2 74622 1wdpA 495 1.27e+01 1sauA 115 1.28e+01 1bw0A 416 1.34e+01 1bw0A c.67.1.1 34385 1k32A 1045 1.35e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1m0wA 491 1.39e+01 c.30.1.4,d.142.1.6 78363,78364 1o4sA 389 1.39e+01 c.67.1.1 86620 1ihjA 98 1.39e+01 1pdr b.36.1.1 62382 1ad1A 266 1.39e+01 1aj2 c.1.21.1 29668 1sg0A 230 1.40e+01 1o6zA 303 1.41e+01 c.2.1.5,d.162.1.1 81107,81108 1aj8A 371 1.47e+01 1aj8A a.103.1.1 18900 1azsA 220 1.52e+01 1azsA d.58.29.1 39416 1itxA 419 1.57e+01 c.1.8.5,d.26.3.1 71425,71426 1lm4A 194 1.59e+01 d.167.1.1 84626 1o3uA 135 1.62e+01 a.24.16.3 86615 1iomA 377 1.64e+01 a.103.1.1 83698 1uuqA 440 1.73e+01 c.1.8.3 100015 1a6jA 163 1.74e+01 1a6jA d.112.1.1 40915 1quuA 250 1.79e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1egwA 77 1.81e+01 1mnmA d.88.1.1 40234 1cq3A 233 1.81e+01 1cq3A b.27.1.1 23923 1dowA 205 1.83e+01 1dovA a.24.9.1 16626 1gotG 73 1.86e+01 1tbgE a.137.3.1 19629 1bgc 174 1.89e+01 1bgc a.26.1.1 16822 1l6xB 34 1.93e+01 k.13.1.1 73644 1t7rA 269 1.94e+01 a.123.1.1 106635 1t3iA 420 1.97e+01 c.67.1.3 106354 1h21A 247 1.97e+01 a.138.1.3 76510 1vkeA 133 1.99e+01 a.152.1.2 108650 1llnA 262 2.04e+01 d.165.1.1 84625 1lml 478 2.10e+01 1lml d.92.1.3 40295 1iv8A 720 2.10e+01 b.71.1.1,c.1.8.1 76842,76843 1msk 331 2.13e+01 1msk d.173.1.1 42495 1f1eA 154 2.17e+01 a.22.1.2 64927 1gakA 141 2.20e+01 1gakA a.19.1.1 16415 1jmtB 28 2.23e+01 1khyA 148 2.24e+01 a.174.1.1 77410 1tbfA 347 2.26e+01 a.211.1.2 106743 1td6A 306 2.29e+01 1rfeA 162 2.32e+01 1r3dA 264 2.33e+01 1j8bA 112 2.35e+01 d.222.1.1 77101 1s14A 194 2.39e+01 d.122.1.2 98329 1jgsA 138 2.44e+01 a.4.5.28 66683 1pea 385 2.51e+01 1pea c.93.1.1 35662 1f5vA 240 2.51e+01 1bkjA d.90.1.1 40255 1bf6A 291 2.53e+01 1pscA c.1.9.3 29065 1w6uA 302 2.54e+01 1p80A 753 2.54e+01 c.23.16.3,e.5.1.1 94337,94338 1y8aA 332 2.55e+01 1sedA 117 2.60e+01 a.219.1.1 105449 1ldjA 760 2.62e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1dc1A 323 2.68e+01 1dc1A c.52.1.11 33321 1qamA 244 2.69e+01 2ercA c.66.1.24 34220 1rylA 167 2.76e+01 d.276.1.1 105124 1jmuB 666 2.78e+01 1otfA 62 2.84e+01 1otfA d.80.1.1 39820 2gq1A 332 2.84e+01 1qnxA 209 2.86e+01 1qnxA d.111.1.1 40914 2pvbA 107 2.87e+01 1a75A a.39.1.4 17205 2bjfA 329 2.91e+01 1sflA 238 2.95e+01 1t6fA 37 2.95e+01 h.1.28.1 106565 2gkpA 167 3.01e+01 1j79A 347 3.06e+01 1j79A c.1.9.4 62675 1e3dB 542 3.07e+01 1h2rL e.18.1.1 59189 1ofwA 296 3.09e+01 a.138.1.1 92850 1a93B 34 3.12e+01 1a93B h.1.3.1 45545 1nfvA 179 3.15e+01 a.25.1.1 85642 1jq5A 370 3.18e+01 e.22.1.2 67084 1j1iA 296 3.24e+01 c.69.1.10 83977 1sgmA 191 3.29e+01 a.4.1.9,a.121.1.1 105537,105538 1iw0A 215 3.30e+01 a.132.1.1 83720 1scfA 273 3.30e+01 1exzA a.26.1.2 16873 1pzlA 237 3.32e+01 a.123.1.1 104393 1ggzA 148 3.38e+01 a.39.1.5 70176 1agt 38 3.41e+01 1sco g.3.7.2 44156 1s9pA 227 3.41e+01 a.123.1.1 105384 1u0fA 564 3.41e+01 1q5dA 419 3.51e+01 a.104.1.1 95891 1mtpA 323 3.59e+01 e.1.1.1 85107 1cnv 299 3.64e+01 1cnv c.1.8.5 28989 1qwgA 251 3.64e+01 c.1.27.1 96473 1sb0A 87 3.67e+01 a.12.1.1 98789 1m4rA 151 3.73e+01 a.26.1.3 84799 1m93A 55 3.80e+01 e.1.1.1 91235 1ekjA 221 3.83e+01 1ekjB c.53.2.1 33364 1ovlA 271 3.84e+01 a.123.1.1 87455 1kicA 339 3.86e+01 c.70.1.1 72510 1ljoA 77 3.90e+01 b.38.1.1 73941 1hm6A 346 4.02e+01 1avc a.65.1.1 18147 1yz1A 174 4.03e+01 1pvaA 110 4.05e+01 1a75A a.39.1.4 17207 1dofA 403 4.06e+01 1c3cA a.127.1.1 19429 1jdlA 121 4.11e+01 a.3.1.1 66557 1qf8A 182 4.17e+01 1qf8A g.41.4.1 45212 1ru0A 105 4.25e+01 1i5pA 633 4.26e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1t3uA 104 4.26e+01 d.244.1.1 99120 1qwoA 442 4.37e+01 c.60.1.2 104620 1lam 484 4.42e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1guuA 52 4.46e+01 a.4.1.3 83332 1fn9A 365 4.48e+01 1fn9A d.196.1.1 59894 1swvA 267 4.49e+01 1ovnA 248 4.54e+01 a.71.1.1,c.47.1.7 93602,93603 1fcyA 236 4.58e+01 2lbd a.123.1.1 19282 1fxxA 482 4.63e+01 1fxxA c.55.3.5 33726 1pueE 89 4.83e+01 1awcA a.4.5.21 16165 1cxqA 162 4.89e+01 1cxqA c.55.3.2 33621 1a8q 274 4.89e+01 1brt c.69.1.12 34702 1s9rA 410 4.97e+01 d.126.1.4 98758 1bhdA 118 4.98e+01 1bkrA a.40.1.1 17398 1knwA 425 5.00e+01 b.49.2.3,c.1.6.1 90969,90970 1a76 326 5.01e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1pu6A 218 5.02e+01 a.96.1.5 95123 1l9lA 74 5.03e+01 a.64.1.1 77827 1sv6A 269 5.06e+01 d.177.1.1 106043 1cpt 412 5.07e+01 1cpt a.104.1.1 18968 1kcfA 258 5.12e+01 a.140.2.1,c.55.3.7 68434,68435 1oohA 126 5.13e+01 a.39.2.1 93383 1eexA 554 5.13e+01 1dioA c.1.19.3 29650 1eemA 241 5.15e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1b9hA 388 5.17e+01 1b9hA c.67.1.4 34488 1wddS 128 5.17e+01 1oe8A 211 5.20e+01 a.45.1.1,c.47.1.5 86905,86906 1jb0L 154 5.21e+01 1jb0L f.31.1.1 62829 1fiuA 286 5.22e+01 1fiuA c.52.1.10 33317 1na6A 404 5.35e+01 b.142.1.1,c.52.1.22 91748,91749 1sg6A 393 5.37e+01 e.22.1.1 105522 1si2A 149 5.41e+01 b.34.14.1 105569 1qo0D 196 5.42e+01 1qo0D c.23.1.3 31125 1al3 324 5.42e+01 1al3 c.94.1.1 35835 1bjaA 95 5.45e+01 1bjaA a.4.5.9 16122 1a8rA 221 5.46e+01 1a8rA d.96.1.1 40587 1bouA 139 5.55e+01 1bouA a.88.1.1 18521 1ecmA 109 5.56e+01 1ecmA a.130.1.1 19492 2gnxA 365 5.56e+01 1q8bA 105 5.57e+01 d.58.4.6 96201 1bcpB 199 5.60e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1fmjA 351 5.64e+01 c.37.1.5 59879 1h8eA 510 5.68e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1or7A 194 5.70e+01 a.4.13.2,a.177.1.1 87332,87333 1e85A 127 5.73e+01 1bbhA a.24.3.2 16549 1s4nA 348 5.73e+01 c.68.1.16 98501 1sh0A 510 5.74e+01 e.8.1.4 98876 1s5lX 50 5.83e+01 1t0fA 276 5.86e+01 1r8gA 372 5.87e+01 d.128.1.3 104845 1r4gA 53 5.91e+01 a.8.5.1 96996 1r6uA 437 5.92e+01 c.26.1.1 97163 1ne7A 289 6.04e+01 c.124.1.1 91833 1e4mM 501 6.15e+01 1e70M c.1.8.4 59226 1rxqA 178 6.15e+01 a.213.1.1 105118 1cuk 203 6.24e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1n4qB 377 6.24e+01 a.102.4.3 91636 1t5bA 201 6.29e+01 c.23.5.3 106433 1pq4A 291 6.33e+01 c.92.2.2 94995 1q3eA 207 6.33e+01 b.82.3.2 95669 1dcs 311 6.35e+01 1dcs b.82.2.1 28124 1ug6A 431 6.37e+01 c.1.8.4 88490 1pvgA 418 6.38e+01 d.14.1.3,d.122.1.2 95161,95162 1chuA 540 6.43e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1r0dA 206 6.43e+01 a.216.1.1 104715 1reqB 637 6.49e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1hfeL 421 6.49e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1e1hA 287 6.50e+01 d.92.1.7 83167 1sqnA 261 6.54e+01 a.123.1.1 105944 1ryp2 233 6.54e+01 1ryp2 1onrA 316 6.55e+01 1onrA c.1.10.1 29169 1epuA 591 6.59e+01 1dn1A e.25.1.1 43358 1k0dA 260 6.61e+01 a.45.1.1,c.47.1.5 67930,67931 1m22A 503 6.62e+01 c.117.1.1 78464 1byyA 53 6.64e+01 j.12.1.1 46147 1euhA 475 6.72e+01 1euhA c.82.1.1 35369 1dpgA 485 6.72e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1sx7A 164 6.76e+01 1f0nA 285 6.79e+01 1dqyA c.69.1.3 34636 1i58A 189 6.86e+01 1b3qA d.122.1.3 61773 1xm3A 264 6.95e+01 1qzgA 187 6.95e+01 b.40.4.3 96643 1mg4A 113 7.01e+01 d.15.11.1 84953 1sxvA 172 7.01e+01 1a5t 334 7.10e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1m56D 51 7.14e+01 f.23.8.1 74475 1mdoA 393 7.16e+01 c.67.1.4 79013 1jfxA 217 7.17e+01 c.1.8.8 62943 1s1fA 406 7.18e+01 1k8kE 178 7.21e+01 a.148.1.1 68311 1junA 44 7.23e+01 1junA h.1.3.1 45540 1q6uA 245 7.24e+01 d.26.1.1 95998 1on2A 142 7.27e+01 a.4.5.24,a.76.1.1 87103,87104 1n35A 1267 7.27e+01 e.8.1.4 79935 1uq5A 263 7.28e+01 d.165.1.1 99778 1j5wA 298 7.32e+01 d.104.1.1 71589 1h6fA 193 7.35e+01 b.2.5.4 70901 1llmC 88 7.36e+01 g.37.1.1,g.37.1.1 91059,91060 1iybA 208 7.41e+01 d.124.1.1 90720 1r5yA 386 7.43e+01 c.1.20.1 97134 1bh9A 45 7.52e+01 1bh9A a.22.1.3 16483 1kv5A 250 7.55e+01 c.1.1.1 73052 1hleA 345 7.55e+01 1ovaA e.1.1.1 42618 1ppo 216 7.57e+01 1cs8A d.3.1.1 37020 1zoiA 276 7.72e+01 1p4xA 250 7.72e+01 a.4.5.28,a.4.5.28 87784,87785 1ckeA 227 7.74e+01 1ckeA c.37.1.1 31846 1q5nA 454 7.78e+01 a.127.1.1 95901 1pwxA 254 7.92e+01 c.2.1.2 95262 1szoA 257 7.93e+01 c.14.1.3 106164 1c7gA 456 7.95e+01 c.67.1.2 90415 1i19A 561 7.99e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1w1oA 534 8.06e+01 d.58.32.4,d.145.1.1 109071,109072 1q79A 514 8.17e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1bgp 309 8.18e+01 1bgp a.93.1.1 18690 1r6dA 337 8.20e+01 c.2.1.2 97148 1khqA 212 8.21e+01 d.3.1.1 90964 1qo7A 394 8.26e+01 1qo7A c.69.1.11 34697 1lvoA 302 8.27e+01 b.47.1.4 74284 1g4iA 123 8.30e+01 1poa a.133.1.2 60241 1ocxA 182 8.30e+01 b.81.1.3 86814 1s50A 259 8.32e+01 1sgwA 214 8.37e+01 c.37.1.12 105541 1v37A 177 8.39e+01 1q8cA 151 8.41e+01 a.79.1.2 96202 1q6hA 224 8.42e+01 d.26.1.1 95975 1otkA 249 8.42e+01 a.25.1.2 93521 1h5oA 42 8.44e+01 g.9.1.2 83484 1n0uA 842 8.46e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1nznA 126 8.46e+01 a.118.8.1 92382 1nd4A 264 8.48e+01 d.144.1.6 91815 1ubkL 534 8.53e+01 e.18.1.1 88422 19hcA 292 8.57e+01 19hcA a.138.1.1 19668 1d3bB 91 8.57e+01 1d3bB b.38.1.1 24804 1m33A 258 8.58e+01 c.69.1.26 78514 1r2zA 274 8.58e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 3bamA 213 8.58e+01 1bam c.52.1.3 33288 1q4gA 553 8.65e+01 a.93.1.2,g.3.11.1 95789,95790 1g55A 343 8.65e+01 1g55A c.66.1.26 34247 2ck3A 510 8.68e+01 1brwA 433 8.69e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1k8kG 151 8.77e+01 a.118.13.1 68313 1ejxA 100 8.87e+01 d.8.1.1 83182 1l6kA 77 8.93e+01 h.6.1.1 77724 1ig5A 75 8.99e+01 4icb a.39.1.1 62363 1ho8A 480 8.99e+01 1ho8A a.118.1.9 61107