# TARGET T0300 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0300.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.88843 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.002 0.001 0.001 0.004 0.001 0.002 0.990 2 A 0.012 0.019 0.013 0.065 0.005 0.063 0.822 3 S 0.015 0.010 0.024 0.051 0.178 0.127 0.595 4 K 0.019 0.016 0.027 0.039 0.193 0.155 0.550 5 K 0.010 0.007 0.008 0.006 0.199 0.018 0.750 6 P 0.009 0.005 0.020 0.014 0.180 0.243 0.528 7 D 0.008 0.014 0.016 0.014 0.168 0.297 0.482 8 K 0.009 0.026 0.002 0.017 0.291 0.013 0.642 9 T 0.017 0.048 0.001 0.036 0.087 0.005 0.806 10 Y 0.001 0.001 0.002 0.991 0.001 0.002 0.003 11 E 0.001 0.001 0.003 0.994 0.001 0.001 0.001 12 E 0.001 0.001 0.005 0.991 0.001 0.002 0.002 13 M 0.001 0.001 0.002 0.994 0.001 0.003 0.001 14 V 0.001 0.001 0.001 0.996 0.001 0.003 0.001 15 K 0.001 0.001 0.001 0.993 0.001 0.006 0.001 16 E 0.001 0.001 0.001 0.991 0.001 0.007 0.001 17 V 0.001 0.001 0.001 0.994 0.001 0.003 0.001 18 E 0.001 0.001 0.001 0.991 0.001 0.007 0.001 19 R 0.001 0.001 0.001 0.980 0.001 0.017 0.001 20 L 0.001 0.001 0.002 0.978 0.001 0.016 0.003 21 K 0.001 0.001 0.003 0.973 0.003 0.016 0.003 22 L 0.001 0.001 0.003 0.964 0.006 0.022 0.003 23 E 0.001 0.001 0.002 0.946 0.004 0.039 0.007 24 N 0.001 0.001 0.004 0.942 0.005 0.025 0.022 25 K 0.001 0.001 0.009 0.968 0.002 0.019 0.002 26 T 0.001 0.001 0.019 0.949 0.002 0.025 0.004 27 L 0.001 0.001 0.016 0.960 0.001 0.018 0.004 28 K 0.001 0.001 0.007 0.973 0.002 0.012 0.005 29 Q 0.003 0.001 0.013 0.960 0.002 0.017 0.005 30 K 0.005 0.001 0.010 0.957 0.002 0.022 0.005 31 V 0.015 0.006 0.013 0.884 0.011 0.044 0.028 32 K 0.023 0.007 0.019 0.725 0.033 0.147 0.046 33 S 0.019 0.004 0.019 0.463 0.049 0.382 0.065 34 S 0.013 0.005 0.027 0.133 0.138 0.467 0.217 35 G 0.015 0.008 0.022 0.026 0.334 0.252 0.344 36 A 0.036 0.041 0.019 0.010 0.225 0.091 0.578 37 V 0.039 0.079 0.010 0.006 0.164 0.042 0.659 38 S 0.021 0.017 0.006 0.002 0.077 0.023 0.853 39 S 0.012 0.007 0.060 0.023 0.220 0.382 0.297 40 D 0.013 0.007 0.073 0.033 0.207 0.453 0.214 41 D 0.032 0.011 0.106 0.039 0.262 0.086 0.464 42 S 0.117 0.021 0.060 0.054 0.138 0.096 0.514 43 I 0.236 0.071 0.042 0.042 0.096 0.077 0.437 44 L 0.168 0.083 0.006 0.024 0.082 0.015 0.623 45 T 0.053 0.015 0.003 0.013 0.033 0.006 0.877 46 A 0.004 0.001 0.063 0.810 0.013 0.092 0.016 47 A 0.002 0.001 0.035 0.898 0.007 0.052 0.006 48 K 0.003 0.001 0.042 0.906 0.005 0.024 0.018 49 R 0.007 0.002 0.009 0.946 0.004 0.014 0.018 50 E 0.015 0.001 0.006 0.952 0.007 0.009 0.011 51 S 0.011 0.001 0.003 0.972 0.004 0.008 0.003 52 I 0.009 0.001 0.001 0.976 0.002 0.009 0.002 53 I 0.014 0.001 0.002 0.967 0.002 0.008 0.006 54 V 0.010 0.001 0.004 0.962 0.004 0.013 0.007 55 S 0.006 0.001 0.008 0.926 0.011 0.033 0.015 56 S 0.004 0.001 0.017 0.893 0.013 0.050 0.021 57 S 0.002 0.001 0.019 0.936 0.009 0.022 0.013 58 R 0.002 0.001 0.029 0.898 0.017 0.044 0.010 59 A 0.001 0.001 0.013 0.939 0.005 0.037 0.005 60 L 0.001 0.001 0.006 0.960 0.002 0.025 0.007 61 G 0.001 0.001 0.002 0.980 0.002 0.008 0.009 62 A 0.001 0.001 0.002 0.992 0.001 0.004 0.001 63 V 0.001 0.001 0.001 0.995 0.001 0.003 0.001 64 A 0.001 0.001 0.001 0.995 0.001 0.003 0.001 65 M 0.001 0.001 0.001 0.996 0.001 0.003 0.001 66 R 0.001 0.001 0.001 0.997 0.001 0.003 0.001 67 K 0.001 0.001 0.001 0.995 0.001 0.003 0.001 68 I 0.001 0.001 0.001 0.996 0.001 0.003 0.001 69 E 0.001 0.001 0.001 0.996 0.001 0.002 0.001 70 A 0.001 0.001 0.001 0.995 0.001 0.004 0.001 71 K 0.001 0.001 0.001 0.991 0.001 0.007 0.001 72 V 0.001 0.001 0.001 0.980 0.002 0.010 0.005 73 R 0.002 0.001 0.007 0.941 0.008 0.026 0.015 74 S 0.002 0.001 0.021 0.853 0.014 0.098 0.012 75 R 0.003 0.001 0.038 0.707 0.026 0.198 0.027 76 A 0.008 0.006 0.091 0.521 0.073 0.200 0.100 77 A 0.020 0.007 0.145 0.216 0.175 0.227 0.209 78 K 0.049 0.007 0.120 0.121 0.183 0.240 0.280 79 A 0.032 0.011 0.016 0.031 0.098 0.034 0.778 80 V 0.050 0.054 0.004 0.039 0.152 0.021 0.680 81 T 0.021 0.020 0.001 0.021 0.204 0.004 0.728 82 E 0.001 0.001 0.006 0.978 0.002 0.008 0.004 83 Q 0.001 0.001 0.007 0.986 0.001 0.005 0.001 84 E 0.001 0.001 0.009 0.983 0.001 0.004 0.004 85 L 0.001 0.001 0.001 0.996 0.001 0.002 0.001 86 T 0.001 0.001 0.001 0.996 0.001 0.003 0.001 87 S 0.001 0.001 0.001 0.987 0.001 0.011 0.001 88 L 0.001 0.001 0.002 0.977 0.001 0.016 0.003 89 L 0.007 0.004 0.020 0.887 0.012 0.058 0.012 90 Q 0.005 0.001 0.032 0.485 0.023 0.440 0.015 91 S 0.010 0.001 0.036 0.146 0.084 0.657 0.066 92 L 0.109 0.006 0.013 0.015 0.194 0.092 0.571 93 T 0.322 0.004 0.005 0.006 0.236 0.082 0.346 94 L 0.919 0.001 0.001 0.002 0.010 0.006 0.060 95 R 0.970 0.001 0.001 0.001 0.001 0.001 0.026 96 V 0.986 0.001 0.001 0.001 0.001 0.001 0.011 97 D 0.951 0.001 0.001 0.001 0.005 0.001 0.040 98 V 0.786 0.002 0.001 0.001 0.026 0.005 0.179 99 S 0.546 0.009 0.001 0.001 0.089 0.010 0.342 100 M 0.254 0.024 0.014 0.007 0.175 0.055 0.470 101 E 0.084 0.011 0.026 0.007 0.047 0.096 0.729 102 E 0.006 0.001 0.003 0.001 0.013 0.003 0.973