# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1debA 54 3.97e-01 1debA h.1.18.1 45660 1pb6A 212 1.99e+00 a.4.1.9,a.121.1.1 88017,88018 1go4E 100 2.18e+00 h.1.22.1 70296 2cruA 118 4.65e+00 1fmhA 33 4.94e+00 1fmhB k.6.1.1 46409 1j8bA 112 5.10e+00 d.222.1.1 77101 2cw9A 194 5.18e+00 1nxiA 132 5.87e+00 d.58.47.1 86381 1tmzA 32 6.00e+00 1tmzA k.1.1.1 46376 1ku1A 230 6.51e+00 a.118.3.1 72996 2ghpA 292 6.74e+00 1p4wA 99 7.08e+00 a.4.6.2 87783 1z9bA 135 7.19e+00 1wd6A 123 7.27e+00 2fbwC 141 7.56e+00 2aucA 126 8.45e+00 1rkeA 262 8.64e+00 a.24.9.1,a.24.9.1 97608,97609 1lzjA 292 8.92e+00 c.68.1.9 74352 1b35B 255 9.80e+00 1b35B b.121.4.1 23334 1ydiA 263 1.04e+01 1ithA 141 1.14e+01 1ithA a.1.1.2 15623 1ymtA 246 1.19e+01 1f45B 197 1.29e+01 1f45B a.26.1.1 59642 1mknA 59 1.30e+01 1mknA g.5.1.1 44383 1zjkA 403 1.32e+01 2ew0A 192 1.35e+01 1bl3A 160 1.35e+01 1b9dA c.55.3.2 33655 1y1xA 191 1.49e+01 1oqyA 368 1.49e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1t01A 255 1.51e+01 a.24.9.1,a.24.9.1 106188,106189 1p9iA 31 1.60e+01 h.1.10.1 94390 1gotB 340 1.63e+01 1tbgA b.69.4.1 27648 1r13A 148 1.70e+01 d.169.1.1,h.1.1.1 96782,96783 1kskA 234 1.73e+01 d.66.1.5,d.265.1.3 72920,90389 1yub 245 1.74e+01 2ercA c.66.1.24 34219 1jsdB 176 1.89e+01 h.3.1.1 63259 1zw0A 66 1.92e+01 1mwqA 101 1.93e+01 d.58.4.7 91481 1sb2A 133 1.95e+01 2bcjB 340 2.02e+01 2a1dD 329 2.02e+01 1zvzA 279 2.03e+01 1hr0W 71 2.07e+01 1ah9 b.40.4.5 25329 1q8bA 105 2.13e+01 d.58.4.6 96201 1vrvA 101 2.16e+01 2sas 185 2.20e+01 2sas a.39.1.5 17258 1tikA 213 2.22e+01 c.23.5.3 107003 2fqxA 318 2.25e+01 1t6fA 37 2.26e+01 h.1.28.1 106565 1mvwB 145 2.31e+01 i.15.1.1 79524 1zr0B 63 2.52e+01 1ry9A 145 2.71e+01 d.198.1.1 98094 1ci6A 63 2.73e+01 1ci6A h.1.3.1 45548 1vkrA 125 2.74e+01 c.44.2.1 108689 1whzA 70 2.75e+01 1gu4A 78 2.77e+01 h.1.3.1 83317 1nwbA 124 2.82e+01 b.124.1.1 86296 1fmhB 33 2.84e+01 1fmhB k.6.1.1 46410 2adoA 196 2.86e+01 1j7nA 776 2.88e+01 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1q2fA 32 2.90e+01 j.69.1.1 95627 2etxA 209 2.97e+01 1lxjA 104 3.01e+01 d.58.48.1 84736 2blcA 238 3.16e+01 1qovH 260 3.25e+01 6prcH b.41.1.1,f.23.10.1 25464,43457 1eq7A 56 3.29e+01 1eq7A h.1.16.1 45655 1kq6A 141 3.30e+01 d.189.1.1 91020 2occF 98 3.45e+01 2occF g.41.5.3 45256 1ybxA 143 3.64e+01 1ktjA 129 3.66e+01 b.1.18.7 72974 1exrA 148 3.68e+01 1cll a.39.1.5 17299 1jj2U 70 3.87e+01 1ffkS a.2.2.1 63106 1wgoA 123 3.89e+01 1s72V 71 3.96e+01 a.2.2.1 105341 1yqyA 523 3.96e+01 2bbeA 108 4.01e+01 1vqoV 71 4.21e+01 1lj2A 110 4.23e+01 h.1.13.2 73926 1ngmB 72 4.28e+01 j.104.1.1 85687 1l1oC 181 4.29e+01 b.40.4.3 73480 1no4A 97 4.30e+01 h.1.24.1 85918 1kxu 333 4.31e+01 1jkw a.74.1.1,a.74.1.1 18358,18359 1mg4A 113 4.40e+01 d.15.11.1 84953 1x3aA 100 4.41e+01 1z2iA 358 4.50e+01 1itg 166 4.51e+01 1b9dA c.55.3.2 33661 1azsA 220 4.51e+01 1azsA d.58.29.1 39416 1a93B 34 4.53e+01 1a93B h.1.3.1 45545 1p0iA 529 4.54e+01 c.69.1.1 93867 1rzhH 260 4.60e+01 b.41.1.1,f.23.10.1 98162,98163 1r6xA 395 4.63e+01 b.122.1.3,c.26.1.5 97167,97168 1jw2A 72 4.64e+01 a.23.5.1 67372 2fs3A 282 4.69e+01 1vjlA 164 4.83e+01 d.257.1.1 100822 2ztaA 34 4.87e+01 2ztaA h.1.3.1 45474 1t3jA 96 4.89e+01 h.4.16.1 106356 1a02F 56 5.05e+01 1a02F h.1.3.1 45534 1sedA 117 5.12e+01 a.219.1.1 105449 1qkkA 155 5.17e+01 1dbwA c.23.1.1 31104 1l8dA 112 5.17e+01 h.4.12.1 73687 1exqA 154 5.21e+01 1b9dA c.55.3.2 33646 1t6aA 126 5.21e+01 d.129.8.1 106555 1vctA 205 5.31e+01 1xeqA 103 5.35e+01 1ga3A 113 5.37e+01 1ga3A a.26.1.2 60411 1qsgA 265 5.38e+01 1eny c.2.1.2 29935 1wmiB 67 5.54e+01 1tidB 119 5.63e+01 c.13.2.1 107000 1s9kD 53 5.63e+01 1v54F 98 5.65e+01 g.41.5.3 100327 1ufmA 84 5.65e+01 a.4.5.47 107816 1x4tA 92 5.65e+01 1qo7A 394 5.71e+01 1qo7A c.69.1.11 34697 1al3 324 5.74e+01 1al3 c.94.1.1 35835 2beqD 48 5.78e+01 2ftuA 118 5.80e+01 1cuoA 129 5.84e+01 1nwpA b.6.1.1 23015 1scfA 273 6.00e+01 1exzA a.26.1.2 16873 1fzrA 138 6.46e+01 1fzrA c.52.1.17 33336 1m0dA 138 6.48e+01 c.52.1.17 74354 1nwwA 149 6.48e+01 d.17.4.8 86306 2bm8A 236 6.58e+01 1wt4A 73 6.59e+01 1pzwA 80 6.66e+01 g.39.1.10 95483 1aym3 238 6.68e+01 1aym3 1egwA 77 6.73e+01 1mnmA d.88.1.1 40234 1sflA 238 6.83e+01 1ohgA 282 6.85e+01 d.183.1.1 93018 1wzdA 215 6.86e+01 1dc1A 323 6.90e+01 1dc1A c.52.1.11 33321 1x2iA 75 6.93e+01 1qopB 396 6.96e+01 2tysB c.79.1.1 35270 1top 162 7.09e+01 1ncx a.39.1.5 17223 1wjpA 107 7.12e+01 1fh6A 282 7.18e+01 1fh6A 1ij2A 34 7.30e+01 h.1.3.1 62474 1y8aA 332 7.44e+01 2a3qA 170 7.47e+01 1ecmA 109 7.53e+01 1ecmA a.130.1.1 19492 2bl9A 238 7.68e+01 1sr9A 644 7.68e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 2bayA 61 7.70e+01 2cg4A 152 7.75e+01 1qamA 244 8.06e+01 2ercA c.66.1.24 34220 1p94A 76 8.11e+01 a.43.1.3 94380 1m5yA 408 8.18e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 1umuA 116 8.26e+01 1umuA b.87.1.1 28382 2b1eA 564 8.28e+01 1p65A 73 8.28e+01 d.254.1.1 94156 1ckv 141 8.28e+01 1ckv d.137.1.1 41452 1wrdA 103 8.37e+01 1t56A 216 8.37e+01 a.4.1.9,a.121.1.1 106428,106429 1eg3A 261 8.43e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1fm0E 150 8.77e+01 1fmaE d.41.5.1 38629 1nu7D 282 8.78e+01 a.8.6.1,a.8.6.1 92191,92192