CreatePredAlphaCost pred_alpha2k alpha11 T0299.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0299.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0299.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \ phobic_fit 2 \ sidechain 3 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 20 backbone_clashes 2 \ break 60 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 10 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 # from decoys/Pcons6_TS4.sheets # identical from decoys/Pmodeller6_TS2.sheets SheetConstraint G10 V13 K35 S38 hbond I11 1 SheetConstraint E34 S38 Q72 L76 hbond V36 1 SheetConstraint S73 L77 R99 L103 hbond F74 1 SheetConstraint V127 Y129 F102 F104 hbond L128 1 SheetConstraint I135 G138 Y160 I163 hbond F136 1 # from decoys/Pcons6_TS4.helices # identical from decoys/Pmodeller6_TS2.helices HelixConstraint V20 L31 HelixConstraint K53 Y68 HelixConstraint E80 L89 HelixConstraint E87 W93 HelixConstraint V111 S120 HelixConstraint Y145 L154 HelixConstraint F171 K180