# List of top-scoring protein chains for T0299.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uarA 285 3.90e+00 c.46.1.2,c.46.1.2 107762,107763 1ufrA 181 4.37e+00 c.61.1.1 99354 1rcuA 195 4.75e+00 c.129.1.1 97295 1zbrA 349 5.12e+00 1n71A 180 1.04e+01 d.108.1.1 85370 1b87A 181 1.05e+01 1b87A d.108.1.1 40797 2a4nA 182 1.06e+01 2c4vA 167 1.17e+01 2f1dA 207 1.30e+01 2c57A 180 1.48e+01 2abk 211 1.51e+01 2abk a.96.1.1 18743 1e6iA 121 1.52e+01 1b91A a.29.2.1 16969 2c4wA 176 1.54e+01 1y6jA 318 1.56e+01 1z5nA 242 1.69e+01 1fo5A 85 1.79e+01 1fo5A c.47.1.1 59922 2a74A 643 2.00e+01 1b1a 137 2.00e+01 1be1 c.23.6.1 31242 1x4qA 92 2.13e+01 1jysA 242 2.14e+01 c.56.2.1 77216 1z5oA 242 2.35e+01 1zghA 260 2.68e+01 1xfiA 367 2.95e+01 e.50.1.1 109584 1gwz 299 3.22e+01 2shpA c.45.1.2 32685 1e0jA 289 3.22e+01 1cr1A c.37.1.11 32290 1ccwA 137 3.23e+01 1be1 c.23.6.1 31238 1a9r 282 3.25e+01 1b8oA c.56.2.1 33767 1a9t 284 3.27e+01 1b8oA c.56.2.1 33765 1b8oA 284 3.27e+01 1b8oA c.56.2.1 33762 1fprA 284 3.27e+01 2shpA c.45.1.2 59949 1a9s 289 3.27e+01 1b8oA c.56.2.1 33768 3pnp 289 3.28e+01 1b8oA c.56.2.1 33763 2ai2A 289 3.28e+01 1cr1A 296 3.38e+01 1cr1A c.37.1.11 32286 1oj4A 283 3.73e+01 d.14.1.5,d.58.26.5 93083,93084 1tlk 154 3.83e+01 1tlk b.1.1.4 21707 1ys7A 233 3.83e+01 2b1eA 564 3.83e+01 2b7mA 566 3.85e+01 1vfn 281 4.02e+01 1b8oA c.56.2.1 33773 1fxuA 289 4.13e+01 1b8oA c.56.2.1 33772 1lvuA 289 4.15e+01 c.56.2.1 91146 1n0eA 166 4.33e+01 b.129.1.2 91508 1rf8A 213 4.41e+01 d.86.1.1 97370 1p1xA 260 4.50e+01 c.1.10.1 104060 2arhA 203 4.67e+01 2cvbA 188 4.73e+01 1qapA 296 4.74e+01 1qpoA c.1.17.1,d.41.2.1 29559,38595 1pb7A 292 4.75e+01 c.94.1.1 88025 1pb8A 292 4.77e+01 c.94.1.1 88026 1lfwA 470 4.88e+01 c.56.5.4,d.58.19.1 77942,77943 1a3c 181 5.04e+01 1a3c c.61.1.1 34095 1v25A 541 5.10e+01 e.23.1.1 108275 1q57A 503 5.15e+01 c.37.1.11,e.13.1.2 95867,95868 1i9cA 137 5.17e+01 c.23.6.1 71136 1czkA 169 5.23e+01 1rcf c.23.5.1 31186 1i8fA 81 5.41e+01 1i8fA b.38.1.1 61959 1v73A 342 5.42e+01 1ce9A 34 5.43e+01 1ce9C h.1.3.1 45483 1htyA 1015 5.46e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1ps3A 1045 5.51e+01 a.8.3.1,b.30.5.6,c.6.2.1 95065,95066,95067 1rlhA 173 5.51e+01 d.256.1.1 97646 1qwnA 1045 5.53e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1qx1A 1045 5.53e+01 a.8.3.1,b.30.5.6,c.6.2.1 96512,96513,96514 1v0bA 288 5.81e+01 d.144.1.7 100241 1ap8 213 5.82e+01 1ap8 d.86.1.1 40151 1aj8A 371 5.93e+01 1aj8A a.103.1.1 18900 1cznA 169 5.98e+01 1rcf c.23.5.1 31181 2g8lA 299 6.20e+01 2ftsA 419 6.24e+01 1t3eA 421 6.26e+01 b.85.6.1,b.103.1.1,c.57.1.2 106348,106349,106350 1kdqA 131 6.35e+01 b.47.1.2 84386 1d03A 169 6.37e+01 1rcf c.23.5.1 31182 1atg 231 6.46e+01 1atg c.94.1.1 35834 1rkxA 357 6.72e+01 c.2.1.2 97631 1cqmA 101 6.83e+01 1ris d.58.14.1 39321 1qazA 351 7.09e+01 1qazA a.102.3.1 18848 1vrxA 358 7.13e+01 1ag9A 175 7.24e+01 1rcf c.23.5.1 31178 1d3bB 91 7.25e+01 1d3bB b.38.1.1 24804 1eceA 358 7.40e+01 1eceA c.1.8.3 28813 2cqeA 98 7.50e+01 1yb5A 351 7.52e+01 1a70 97 7.52e+01 1awd d.15.4.1 37678 1je5A 206 7.79e+01 1je5A b.40.4.7 62909 1fbtA 190 7.80e+01 1bif c.60.1.4 34004 1wlsA 328 7.80e+01 1c80A 191 7.81e+01 c.60.1.4 83162 1k1sA 354 7.83e+01 d.240.1.1,e.8.1.7 90386,90387 1fhgA 154 7.85e+01 1tlk b.1.1.4 21706 2b3oA 532 7.94e+01 1ob3A 288 8.23e+01 d.144.1.7 92747 1tu2B 254 8.51e+01 1czrA 169 8.61e+01 1rcf c.23.5.1 31187 2fnoA 248 8.65e+01 1wzuA 300 8.66e+01 1m73E 288 8.98e+01 c.56.2.1 91211