# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjrA 271 1.14e+00 c.108.1.14 100832 1whuA 104 1.60e+00 1y4jA 284 1.87e+00 1g5cA 170 2.37e+00 1g5cA c.53.2.1 60264 1i12A 160 2.71e+00 1i21A d.108.1.1 61515 1xg9A 260 3.11e+00 1zghA 260 3.14e+00 1z1zA 131 3.92e+00 1b87A 181 4.66e+00 1b87A d.108.1.1 40797 1zx8A 136 4.80e+00 1i1dA 161 5.11e+00 1i21A d.108.1.1 61526 1iwmA 186 5.21e+00 b.125.1.2 83758 1yuzA 202 5.29e+00 1bjaA 95 5.76e+00 1bjaA a.4.5.9 16122 1f35A 162 6.38e+00 1f35A b.94.1.1 59628 1gxjA 186 6.70e+00 d.215.1.1 70707 1kcfA 258 7.17e+00 a.140.2.1,c.55.3.7 68434,68435 2g8lA 299 9.54e+00 1z5oA 242 9.64e+00 2awaA 390 9.98e+00 1l2lA 457 1.01e+01 c.72.1.3 77656 1wekA 217 1.02e+01 1hw7A 255 1.06e+01 1i7fA d.193.1.1 61297 1z5nA 242 1.07e+01 1xccA 220 1.11e+01 1y7pA 223 1.14e+01 1xneA 113 1.23e+01 1u20A 212 1.24e+01 1tuzA 118 1.26e+01 1jysA 242 1.34e+01 c.56.2.1 77216 2gk4A 232 1.39e+01 1w36B 1180 1.39e+01 1v72A 356 1.48e+01 1wdjA 187 1.50e+01 1xnfA 275 1.57e+01 1s4nA 348 1.59e+01 c.68.1.16 98501 2bfxA 284 1.66e+01 1o0yA 260 1.71e+01 c.1.10.1 80756 2bnmA 198 1.72e+01 1z92B 219 1.73e+01 1vmbA 140 1.83e+01 2aalA 131 1.83e+01 1aym1 285 1.94e+01 1aym1 1ireA 204 2.10e+01 d.149.1.1 76769 1sheA 103 2.19e+01 d.274.1.1 105551 1lswA 131 2.20e+01 d.110.3.2 78181 2f9sA 151 2.20e+01 2abk 211 2.20e+01 2abk a.96.1.1 18743 1ccwA 137 2.22e+01 1be1 c.23.6.1 31238 1mkp 144 2.23e+01 1vhrA c.45.1.1 32654 1cqqA 180 2.26e+01 1cqqA b.47.1.4 26422 1wj9A 211 2.28e+01 1a8b 318 2.29e+01 1avc a.65.1.1 18171 1rro 108 2.30e+01 1a75A a.39.1.4 17195 1i2aA 219 2.35e+01 e.24.1.1 90660 1e6iA 121 2.40e+01 1b91A a.29.2.1 16969 2a4nA 182 2.55e+01 1dzkA 157 2.57e+01 1obpA b.60.1.1 27096 1nv8A 284 2.70e+01 c.66.1.30 86224 1b2pA 119 2.74e+01 1b2pA b.78.1.1 27998 1xqiA 195 2.79e+01 1h2kA 349 2.98e+01 b.82.2.6 76572 1ugpA 203 3.00e+01 d.149.1.1 107831 2ran 316 3.06e+01 1avc a.65.1.1 18170 1v4pA 157 3.20e+01 1dq3A 454 3.21e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1yr2A 741 3.26e+01 1st9A 143 3.28e+01 c.47.1.10 98987 1r5jA 337 3.29e+01 c.77.1.5 97097 1vpkA 378 3.36e+01 1b7yB 785 3.36e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1jyaA 130 3.39e+01 d.198.1.1 67453 1ctf 74 3.43e+01 1ctf d.45.1.1 38759 1xj4A 119 3.43e+01 1o57A 291 3.49e+01 a.4.5.40,c.61.1.1 92483,92484 1yw3A 208 3.51e+01 2b5lC 222 3.57e+01 1ua4A 455 3.57e+01 c.72.1.3 99128 1r1a1 287 3.57e+01 1aym1 1m45A 148 3.58e+01 a.39.1.5 78598 1repC 251 3.59e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1l6rA 227 3.59e+01 c.108.1.10 77768 1r6uA 437 3.66e+01 c.26.1.1 97163 1e17A 150 3.72e+01 2hfh a.4.5.14 16143 1eajA 126 3.72e+01 1f5wA b.1.1.1 59401 1n71A 180 3.75e+01 d.108.1.1 85370 1s1eA 224 3.77e+01 1zzcA 198 3.79e+01 1c4kA 730 3.80e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1zn6A 227 3.94e+01 1bed 181 3.98e+01 1fvkA c.47.1.13 90330 1v30A 124 3.98e+01 1k3eA 156 4.00e+01 d.198.1.1 68103 1v8yA 170 4.03e+01 1ll8A 114 4.06e+01 d.110.3.5 78089 1jsxA 207 4.06e+01 c.66.1.20 71846 1v7oA 165 4.09e+01 d.67.1.2 100480 1vyiA 112 4.13e+01 2b5iD 217 4.14e+01 1hqkA 154 4.18e+01 c.16.1.1 65902 2f4iA 197 4.20e+01 1p5jA 372 4.22e+01 c.79.1.1 104067 2fokA 579 4.31e+01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1io0A 185 4.33e+01 c.10.1.1 76753 1fxlA 167 4.41e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1tk1A 260 4.44e+01 d.248.1.1 107066 1lci 550 4.46e+01 1lci e.23.1.1 43349 1r0uA 148 4.49e+01 b.60.1.5 96741 2b5eA 504 4.50e+01 1okiA 210 4.53e+01 b.11.1.1,b.11.1.1 93255,93256 2bwqA 129 4.70e+01 1us5A 314 4.75e+01 c.94.1.1 99856 1zzmA 259 4.83e+01 1z0wA 207 5.03e+01 1tr9A 341 5.11e+01 1nijA 318 5.56e+01 c.37.1.10,d.237.1.1 85741,85742 1wznA 252 5.64e+01 2fq4A 192 5.66e+01 1djxB 624 5.72e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 2cveA 191 5.75e+01 1mb3A 124 5.78e+01 c.23.1.1 78907 1ihoA 283 5.96e+01 1ihoA c.26.1.4 62390 1qpoA 284 5.99e+01 1qpoA c.1.17.1,d.41.2.1 29561,38597 1qmpA 130 6.04e+01 1dz3A c.23.1.1 31106 1vajA 214 6.04e+01 1mvwB 145 6.12e+01 i.15.1.1 79524 2fpqA 444 6.18e+01 1nr3A 122 6.19e+01 d.236.1.1 86092 1izmA 184 6.34e+01 a.199.1.1 90725 1jh3A 107 6.45e+01 d.66.1.4 71661 2lhb 149 6.47e+01 2fal a.1.1.2 15597 2ayvA 166 6.49e+01 1shxA 138 6.50e+01 1l5xA 280 6.54e+01 c.106.1.1 77718 1vlmA 219 6.58e+01 c.66.1.41 108836 1q5hA 147 6.58e+01 b.85.4.1 95893 5ukdA 194 6.69e+01 1zin c.37.1.1 31851 1b5tA 275 6.75e+01 1b5tA c.1.23.1 29676 1wpiA 133 6.76e+01 1y4oA 104 6.99e+01 1m0uA 249 7.02e+01 a.45.1.1,c.47.1.5 78359,78360 1eexG 173 7.07e+01 1dioG a.23.2.1 16490 1aisA 182 7.31e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1nx8A 273 7.35e+01 b.82.2.8 86374 1pd21 199 7.38e+01 1pd21 1go3E 187 7.42e+01 b.40.4.5,d.230.1.1 83054,83055 1ixkA 315 7.42e+01 c.66.1.38 90716 1d3gA 367 7.47e+01 1d3gA c.1.4.1 28600 1cqmA 101 7.52e+01 1ris d.58.14.1 39321 2avtA 378 7.68e+01 1w1nA 33 7.73e+01 2gk9A 426 7.78e+01 1k2eA 156 7.88e+01 d.113.1.1 72010 1c4xA 285 7.95e+01 1c4xA c.69.1.10 34684 1v60A 123 7.96e+01 2a67A 167 7.98e+01 1gxqA 106 8.04e+01 a.4.6.1 70721 1fdr 248 8.13e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1uhkA 191 8.19e+01 1l4iA 206 8.28e+01 b.1.11.1,b.7.2.1 73564,73565 1vh7A 265 8.37e+01 c.1.2.1 100646 1k07A 263 8.49e+01 d.157.1.1 77218 1gnkA 112 8.49e+01 2pii d.58.5.1 39073 1wy9A 147 8.53e+01 1yirA 408 8.68e+01 1a05A 358 8.71e+01 1cnzA c.77.1.1 35059 1z9hA 290 8.76e+01 1s7zA 117 8.83e+01 a.159.3.1 98715 1rj9A 304 8.88e+01 a.24.13.1,c.37.1.10 97553,97554 1jr5A 90 8.92e+01 a.150.1.1 67113 1vddA 228 8.94e+01 e.49.1.1 108519 1cnzA 363 8.96e+01 1cnzA c.77.1.1 35061