CreatePredAlphaCost pred_alpha2k alpha11 T0298.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0298.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0298.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 20 dry12 10 \ phobic_fit 1 \ sidechain 5 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 30 backbone_clashes 2 \ break 100 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 10 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 \ maybe_metal 0.5 # from decoys/try2-opt2.sheets SheetConstraint V7 V9 L34 L36 hbond V7 1 SheetConstraint V7 G11 L69 A73 hbond A8 1 SheetConstraint L37 A38 G57 D58 hbond A38 1 SheetConstraint L69 A73 S92 L96 hbond A70 1 SheetConstraint S92 L96 F124 S128 hbond V93 1 # SheetConstraint L126 S128 P106 V108 hbond S127 1 SheetConstraint Q151 L158 Q251 D244 hbond Q151 1 SheetConstraint Q151 L158 P230 Q237 hbond L152 1 SheetConstraint L197 A199 A238 I236 hbond L198 1 SheetConstraint F242 C252 N315 C305 hbond D244 1 # SheetConstraint E291 V294 I271 V274 hbond V294 1 SheetConstraint T292 R296 S313 L309 hbond G295 1 SheetConstraint V297 G300 L309 Q306 hbond R298 1 # from decoys/try3-opt2.sheets # SheetConstraint L5 V10 R33 A38 hbond V7 1 # SheetConstraint N6 G11 G68 A73 hbond A8 1 # SheetConstraint A38 S39 V56 G57 hbond S39 1 SheetConstraint L69 A73 S92 L96 hbond A70 1 SheetConstraint S92 L96 F124 S128 hbond V93 1 # SheetConstraint L126 S128 P106 V108 hbond S127 1 SheetConstraint Q151 S161 Q251 F241 hbond Q151 1 SheetConstraint Q151 L158 P230 Q237 hbond L152 1 SheetConstraint L197 A199 A238 I236 hbond L198 1 SheetConstraint F242 C252 N315 C305 hbond D244 1 # SheetConstraint I271 G275 E291 G295 hbond W273 1 SheetConstraint T292 R296 S313 L309 hbond G295 1 SheetConstraint V297 G300 L309 Q306 hbond R298 1 # from decoys/try1-opt2.sheets SheetConstraint N6 V9 R33 L36 hbond V7 1 SheetConstraint V7 G11 L69 A73 hbond A8 1 SheetConstraint L36 A38 V56 D58 hbond A38 1 SheetConstraint G68 A73 C91 L96 hbond A70 1 SheetConstraint S92 D95 F124 S127 hbond V93 1 # SheetConstraint L126 S128 P106 V108 hbond S127 1 SheetConstraint Q151 L158 Q251 D244 hbond Q151 1 SheetConstraint Q151 L158 P230 Q237 hbond L152 1 SheetConstraint L197 A199 A238 I236 hbond L198 1 SheetConstraint F242 C252 N315 C305 hbond D244 1 # SheetConstraint I271 G275 E291 G295 hbond W273 1 SheetConstraint T292 R296 S313 L309 hbond Y293 1 SheetConstraint V297 G300 L309 Q306 hbond R298 1 # added by hand SheetConstraint P107 M109 L125 S127 hbond L125 8 SheetConstraint E272 V274 E291 Y293 hbond T292 8 # from decoys/try2-opt2.helices HelixConstraint G14 D28 0.3 HelixConstraint D60 S66 0.3 HelixConstraint A75 H82 0.3 HelixConstraint H82 A89 0.3 HelixConstraint N113 Q120 0.3 HelixConstraint C130 A141 0.3 HelixConstraint L140 T146 0.3 HelixConstraint G164 Q174 0.3 HelixConstraint R173 A181 0.3 HelixConstraint S210 R215 0.3 HelixConstraint I216 G225 0.3 HelixConstraint D257 T268 0.3 HelixConstraint V282 L287 0.3 HelixConstraint A321 L336 0.3