/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0298.t06.str2
mkdir -p decoys
rm decoys/read-pdb+servers.under
cd decoys; shopt -s nullglob ;  for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done
cd decoys; shopt -s nullglob ;  for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done
cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \
	do echo ReadConformPDB 	$x chain A >> read-pdb+servers.under ; \
		y=${x#../} ;\
		z=${y/decoys} ;\
		a=${z/T0298.} ;\
		b=${a%.gz} ;\
		c=${b%.pdb} ;\
		echo NameConform $c >> read-pdb+servers.under ; \
	done
cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \
	echo ReadConformPDB $x >> read-pdb+servers.under ; \
	y=${x%.pdb.gz} ; \
	z=${y#servers/} ; \
	echo NameConform $z >> read-pdb+servers.under ; \
	echo SCWRLConform >> read-pdb+servers.under ; \
	echo NameConform $z-scwrl >> read-pdb+servers.under ; \
	done
chgrp protein decoys/read-pdb+servers.under
chmod g+w decoys/read-pdb+servers.under
rm -f decoys/evaluate_2.rdb
sed -e s/XXX0000/T0298/ -e s/START_COL/1/ \
-e s/REAL_PDB/2hjsA/ \
-e s/_domain/_2/ \
-e s/read-pdb/read-pdb+servers/ \
-e 's/ReadConformPDBids/# ReadConformPDBids/' \
-e 's/# ReadConformPDB /ReadConformPDB /' \
-e 's/include COSTFCN.costfcn//' \
-e s/.COSTFCN// \
< /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \
| nice -2 /projects/compbio/programs/undertaker/undertaker
# command:# Seed set to 1169706138
# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/
# command:# reading monomeric-50pc.atoms
# trans (non-proline) backbone unit:
#	  CA= -2.2088 1.0126 -0.0031
#	   O= -0.1499 2.2440 0.0017
#	   C= -0.6889 1.1368 0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4581 0.0000 0.0000
# cis backbone unit:
#	  CA= -0.1462 2.4515 0.0018
#	   O= -2.0272 0.9713 0.0022
#	   C= -0.8006 1.0755 0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4659 0.0000 0.0000
# trans backbone unit before proline:
#	  CA= -2.2099 1.0634 -0.0014
#	   O= -0.1233 2.2459 0.0075
#	   C= -0.6871 1.1518 0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4660 0.0000 0.0000


# After reading monomeric-50pc.atoms have 448 chains in training database
#  Count of chains,residues,atoms: 448,112605,876684
#  109826 residues have no bad marker
#  665 residues lack atoms needed to compute omega
#  322 residues have cis peptide
#  number of each bad type:
#	NON_STANDARD_RESIDUE	6
#	HAS_OXT	325
#	TOO_MANY_ATOMS	1
#	TOO_FEW_ATOMS	523
#	HAS_UNKNOWN_ATOMS	2
#	HAS_DUPLICATE_ATOMS	0
#	CHAIN_BREAK_BEFORE	208
#	NON_PLANAR_PEPTIDE	143
#	BAD_PEPTIDE	1959
#  Note: may sum to more than number of residues, 
#    because one residue may have multiple problems
# command:# Reading rotamer library from dunbrack-1332.rot
# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/
# command:# ReadAtomType exp-pdb.types
Read AtomType exp-pdb with 49 types.
# command:# ReadClashTable exp-pdb-2191-2symm.clash
# Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2
# command:# command:CPU_time= 5.12022 sec, elapsed time= 5.15946 sec)
# command:# Reading spots from monomeric-50pc-dry-5.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-dry-5.hist
# created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot
# command:# Reading spots from monomeric-50pc-wet-6.5.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-wet-6.5.hist
# created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot
# command:# Reading spots from monomeric-50pc-dry-6.5.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-dry-6.5.hist
# created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot
# command:# Reading spots from monomeric-50pc-generic-6.5.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-generic-6.5.hist
# created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot
# command:# Reading spots from near-backbone-center.spot
# reading histogram from smoothed-near-backbone-2spot.hist
# Reading spots from near-backbone-count.spot
# created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot
# command:# Reading spots from way-back-center.spot
# reading histogram from smoothed-way-back-2spot.hist
# Reading spots from way-back-count.spot
# created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot
# command:# Reading spots from monomeric-50pc-dry-8.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-dry-8.hist
# created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot
# command:# Reading spots from monomeric-50pc-dry-10.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-dry-10.hist
# created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot
# command:# Reading spots from monomeric-50pc-dry-12.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-dry-12.hist
# created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot
# command:# reading histogram from dunbrack-2191-alpha.hist
# created alpha cost function alpha with offset 0 and  360 bins
# command:# reading histogram from dunbrack-2191-alpha-1.hist
# created alpha cost function alpha_prev with offset -1 and  360 bins
# command:# Prefix for input files set to /projects/compbio/lib/alphabet/
# command:# Read 3 alphabets from alpha.alphabet
# command:CPU_time= 5.18521 sec, elapsed time= 5.24076 sec)
# command:# Prefix for input files set to 
# command:# Making conformation for sequence T0298 numbered 1 through 336
Created new target T0298 from T0298.a2m
# command:# command:# No conformations to remove in PopConform
# command:# cleared Id set
# command:# command:# ReadConformPDB reading from PDB file T0298_2.real.pdb looking for model 1
Skipped atom 1191, because occupancy 5.0000000e-01 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1193, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1195, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1197, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1199, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1201, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1203, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1205, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1207, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1519, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1521, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1523, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1525, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1527, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1529, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1531, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1533, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1535, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1579, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1581, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1583, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1585, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1587, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1589, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1591, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1593, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1595, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1597, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1599, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1652, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1654, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1656, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1658, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1660, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1662, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1664, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1666, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1668, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1882, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1884, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1886, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1888, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1890, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1892, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1894, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1896, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1898, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1911, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1913, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1915, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1917, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1919, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1921, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1923, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1925, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 1927, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2029, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2031, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2033, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2035, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2037, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2039, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2041, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2043, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2045, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2059, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2061, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2063, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2065, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2067, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2069, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2071, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2073, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2075, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2102, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2104, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2106, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2108, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2110, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2112, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2114, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2116, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2118, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2124, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2126, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2128, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2130, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2132, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2134, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2136, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
Skipped atom 2138, because occupancy 0.500 <= existing 0.500 in T0298_2.real.pdb
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# command:# Saving current conformation as real
# command:# Prefix for output files set to decoys/
# command:# SetRealCost created real_cost = 
#	( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms )
# command:# SetCost created cost = 
#	)
# command:CPU_time= 7.2319 sec, elapsed time= 7.29759 sec)
# command:# Prefix for input files set to 
# command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1
# choosing archetypes in rotamer library
# Found a chain break before 320
# copying to AlignedFragments data structure
# command:# fraction of real conformation used = 1
# GDT_score = -82.5269
# GDT_score(maxd=8,maxw=2.9)= -86.5739
# GDT_score(maxd=8,maxw=3.2)= -83.1358
# GDT_score(maxd=8,maxw=3.5)= -79.6496
# GDT_score(maxd=10,maxw=3.8)= -81.6074
# GDT_score(maxd=10,maxw=4)= -79.2769
# GDT_score(maxd=10,maxw=4.2)= -76.8378
# GDT_score(maxd=12,maxw=4.3)= -80.1252
# GDT_score(maxd=12,maxw=4.5)= -77.7658
# GDT_score(maxd=12,maxw=4.7)= -75.4023
# GDT_score(maxd=14,maxw=5.2)= -73.3853
# GDT_score(maxd=14,maxw=5.5)= -70.1557
# command:# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1447561060.pdb -s /var/tmp/to_scwrl_1447561060.seq -o /var/tmp/from_scwrl_1447561060.pdb > /var/tmp/scwrl_1447561060.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1447561060.pdb
# conformation set from SCWRL output
# command:# naming current conformation model1-scwrl
# command:# Prefix for output files set to 
# command:superimposing iter= 0 total_weight= 2138.000 rmsd (weighted)= 2.316 (unweighted)= 57.723
superimposing iter= 1 total_weight= 5497.339 rmsd (weighted)= 1.087 (unweighted)= 57.730
superimposing iter= 2 total_weight= 2360.241 rmsd (weighted)= 0.821 (unweighted)= 57.687
superimposing iter= 3 total_weight= 1653.026 rmsd (weighted)= 0.746 (unweighted)= 57.652
superimposing iter= 4 total_weight= 1493.585 rmsd (weighted)= 0.715 (unweighted)= 57.625
superimposing iter= 5 total_weight= 1443.616 rmsd (weighted)= 0.698 (unweighted)= 57.605
# command:# Prefix for output files set to decoys/
# command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# command:# fraction of real conformation used = 1
# GDT_score = -77.1505
# GDT_score(maxd=8,maxw=2.9)= -81.2669
# GDT_score(maxd=8,maxw=3.2)= -77.2406
# GDT_score(maxd=8,maxw=3.5)= -72.9662
# GDT_score(maxd=10,maxw=3.8)= -75.5444
# GDT_score(maxd=10,maxw=4)= -72.8343
# GDT_score(maxd=10,maxw=4.2)= -70.2058
# GDT_score(maxd=12,maxw=4.3)= -74.0351
# GDT_score(maxd=12,maxw=4.5)= -71.5075
# GDT_score(maxd=12,maxw=4.7)= -69.1197
# GDT_score(maxd=14,maxw=5.2)= -67.4674
# GDT_score(maxd=14,maxw=5.5)= -64.3789
# command:# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_694025652.pdb -s /var/tmp/to_scwrl_694025652.seq -o /var/tmp/from_scwrl_694025652.pdb > /var/tmp/scwrl_694025652.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_694025652.pdb
# conformation set from SCWRL output
# command:# naming current conformation model2-scwrl
# command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# command:# fraction of real conformation used = 1
# GDT_score = -82.6613
# GDT_score(maxd=8,maxw=2.9)= -86.8637
# GDT_score(maxd=8,maxw=3.2)= -83.4465
# GDT_score(maxd=8,maxw=3.5)= -79.897
# GDT_score(maxd=10,maxw=3.8)= -81.8417
# GDT_score(maxd=10,maxw=4)= -79.5045
# GDT_score(maxd=10,maxw=4.2)= -77.0856
# GDT_score(maxd=12,maxw=4.3)= -80.3456
# GDT_score(maxd=12,maxw=4.5)= -78.0005
# GDT_score(maxd=12,maxw=4.7)= -75.6213
# GDT_score(maxd=14,maxw=5.2)= -73.5859
# GDT_score(maxd=14,maxw=5.5)= -70.3623
# command:# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1729102393.pdb -s /var/tmp/to_scwrl_1729102393.seq -o /var/tmp/from_scwrl_1729102393.pdb > /var/tmp/scwrl_1729102393.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1729102393.pdb
# conformation set from SCWRL output
# command:# naming current conformation model3-scwrl
# command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# command:# fraction of real conformation used = 1
# GDT_score = -76.0753
# GDT_score(maxd=8,maxw=2.9)= -80.6865
# GDT_score(maxd=8,maxw=3.2)= -76.5078
# GDT_score(maxd=8,maxw=3.5)= -72.3958
# GDT_score(maxd=10,maxw=3.8)= -75.0149
# GDT_score(maxd=10,maxw=4)= -72.3645
# GDT_score(maxd=10,maxw=4.2)= -69.8214
# GDT_score(maxd=12,maxw=4.3)= -73.6039
# GDT_score(maxd=12,maxw=4.5)= -71.1563
# GDT_score(maxd=12,maxw=4.7)= -68.778
# GDT_score(maxd=14,maxw=5.2)= -67.0824
# GDT_score(maxd=14,maxw=5.5)= -63.9528
# command:# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1210783754.pdb -s /var/tmp/to_scwrl_1210783754.seq -o /var/tmp/from_scwrl_1210783754.pdb > /var/tmp/scwrl_1210783754.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1210783754.pdb
# conformation set from SCWRL output
# command:# naming current conformation model4-scwrl
# command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# command:# fraction of real conformation used = 1
# GDT_score = -76.8817
# GDT_score(maxd=8,maxw=2.9)= -81.0894
# GDT_score(maxd=8,maxw=3.2)= -77.0623
# GDT_score(maxd=8,maxw=3.5)= -72.8136
# GDT_score(maxd=10,maxw=3.8)= -75.401
# GDT_score(maxd=10,maxw=4)= -72.706
# GDT_score(maxd=10,maxw=4.2)= -70.0849
# GDT_score(maxd=12,maxw=4.3)= -73.9156
# GDT_score(maxd=12,maxw=4.5)= -71.3943
# GDT_score(maxd=12,maxw=4.7)= -69.0155
# GDT_score(maxd=14,maxw=5.2)= -67.3697
# GDT_score(maxd=14,maxw=5.5)= -64.2879
# command:# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_77568936.pdb -s /var/tmp/to_scwrl_77568936.seq -o /var/tmp/from_scwrl_77568936.pdb > /var/tmp/scwrl_77568936.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_77568936.pdb
# conformation set from SCWRL output
# command:# naming current conformation model5-scwrl
# command:# Prefix for input files set to decoys/
# command:# ReadConformPDB reading from PDB file T0298.try1-opt2.pdb looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# command:# fraction of real conformation used = 1
# GDT_score = -76.3441
# GDT_score(maxd=8,maxw=2.9)= -80.7179
# GDT_score(maxd=8,maxw=3.2)= -76.5369
# GDT_score(maxd=8,maxw=3.5)= -72.4257
# GDT_score(maxd=10,maxw=3.8)= -75.0423
# GDT_score(maxd=10,maxw=4)= -72.3901
# GDT_score(maxd=10,maxw=4.2)= -69.8518
# GDT_score(maxd=12,maxw=4.3)= -73.631
# GDT_score(maxd=12,maxw=4.5)= -71.183
# GDT_score(maxd=12,maxw=4.7)= -68.7985
# GDT_score(maxd=14,maxw=5.2)= -67.1162
# GDT_score(maxd=14,maxw=5.5)= -64.0046
# command:# Prefix for output files set to 
# command:superimposing iter= 0 total_weight= 2138.000 rmsd (weighted)= 2.722 (unweighted)= 57.872
superimposing iter= 1 total_weight= 5012.077 rmsd (weighted)= 1.370 (unweighted)= 57.776
superimposing iter= 2 total_weight= 2063.360 rmsd (weighted)= 1.113 (unweighted)= 57.727
superimposing iter= 3 total_weight= 1593.762 rmsd (weighted)= 1.035 (unweighted)= 57.692
superimposing iter= 4 total_weight= 1468.660 rmsd (weighted)= 1.003 (unweighted)= 57.664
superimposing iter= 5 total_weight= 1429.088 rmsd (weighted)= 0.986 (unweighted)= 57.641
# command:# Prefix for output files set to decoys/
# command:# Prefix for input files set to 
# command:# ReadConformPDB reading from PDB file T0298.undertaker-align.pdb looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# command:# naming current conformation align1
# command:# fraction of real conformation used = 0.989247
# GDT_score = -75.672
# GDT_score(maxd=8,maxw=2.9)= -78.9756
# GDT_score(maxd=8,maxw=3.2)= -75.2303
# GDT_score(maxd=8,maxw=3.5)= -71.3474
# GDT_score(maxd=10,maxw=3.8)= -73.9033
# GDT_score(maxd=10,maxw=4)= -71.3903
# GDT_score(maxd=10,maxw=4.2)= -68.8965
# GDT_score(maxd=12,maxw=4.3)= -72.6294
# GDT_score(maxd=12,maxw=4.5)= -70.2203
# GDT_score(maxd=12,maxw=4.7)= -67.9132
# GDT_score(maxd=14,maxw=5.2)= -66.3296
# GDT_score(maxd=14,maxw=5.5)= -63.2806
# command:# ReadConformPDB reading from PDB file T0298.undertaker-align.pdb looking for model 2
WARNING: atoms too close: (T0298)L36.C and (T0298)L37.C only 0.000 apart, marking (T0298)L37.C as missing
WARNING: atoms too close: (T0298)L37.N and (T0298)A38.N only 0.000 apart, marking (T0298)L37.N as missing
WARNING: atoms too close: (T0298)L37.CA and (T0298)A38.CA only 0.000 apart, marking (T0298)L37.CA as missing
WARNING: atoms too close: (T0298)G167.C and (T0298)P183.C only 0.000 apart, marking (T0298)P183.C as missing
WARNING: atoms too close: (T0298)V168.N and (T0298)L184.N only 0.000 apart, marking (T0298)V168.N as missing
WARNING: atoms too close: (T0298)V168.CA and (T0298)L184.CA only 0.000 apart, marking (T0298)V168.CA as missing
WARNING: atoms too close: (T0298)D190.C and (T0298)A194.C only 0.000 apart, marking (T0298)A194.C as missing
WARNING: atoms too close: (T0298)R191.N and (T0298)F195.N only 0.000 apart, marking (T0298)R191.N as missing
WARNING: atoms too close: (T0298)R191.CA and (T0298)F195.CA only 0.000 apart, marking (T0298)R191.CA as missing
WARNING: atoms too close: (T0298)V201.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)G202.N and (T0298)S210.N only 0.000 apart, marking (T0298)G202.N as missing
WARNING: atoms too close: (T0298)G202.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)G202.CA as missing
WARNING: atoms too close: (T0298)Q301.C and (T0298)D303.C only 0.000 apart, marking (T0298)D303.C as missing
WARNING: atoms too close: (T0298)A302.N and (T0298)P304.N only 0.000 apart, marking (T0298)A302.N as missing
WARNING: atoms too close: (T0298)A302.CA and (T0298)P304.CA only 0.000 apart, marking (T0298)A302.CA as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# command:# naming current conformation align2
# command:# fraction of real conformation used = 0.827957
# GDT_score = -63.9785
# GDT_score(maxd=8,maxw=2.9)= -66.2325
# GDT_score(maxd=8,maxw=3.2)= -63.5095
# GDT_score(maxd=8,maxw=3.5)= -60.5894
# GDT_score(maxd=10,maxw=3.8)= -62.4899
# GDT_score(maxd=10,maxw=4)= -60.6079
# GDT_score(maxd=10,maxw=4.2)= -58.7327
# GDT_score(maxd=12,maxw=4.3)= -61.5352
# GDT_score(maxd=12,maxw=4.5)= -59.7278
# GDT_score(maxd=12,maxw=4.7)= -57.9773
# GDT_score(maxd=14,maxw=5.2)= -56.7008
# GDT_score(maxd=14,maxw=5.5)= -54.292
# command:# ReadConformPDB reading from PDB file T0298.undertaker-align.pdb looking for model 3
WARNING: atoms too close: (T0298)D25.C and (T0298)R27.C only 0.000 apart, marking (T0298)R27.C as missing
WARNING: atoms too close: (T0298)E26.N and (T0298)D28.N only 0.000 apart, marking (T0298)E26.N as missing
WARNING: atoms too close: (T0298)E26.CA and (T0298)D28.CA only 0.000 apart, marking (T0298)E26.CA as missing
WARNING: atoms too close: (T0298)A118.C and (T0298)A121.C only 0.000 apart, marking (T0298)A121.C as missing
WARNING: atoms too close: (T0298)S119.N and (T0298)A122.N only 0.000 apart, marking (T0298)S119.N as missing
WARNING: atoms too close: (T0298)S119.CA and (T0298)A122.CA only 0.000 apart, marking (T0298)S119.CA as missing
WARNING: atoms too close: (T0298)A134.C and (T0298)E135.C only 0.000 apart, marking (T0298)E135.C as missing
WARNING: atoms too close: (T0298)E135.N and (T0298)L136.N only 0.000 apart, marking (T0298)E135.N as missing
WARNING: atoms too close: (T0298)E135.CA and (T0298)L136.CA only 0.000 apart, marking (T0298)E135.CA as missing
WARNING: atoms too close: (T0298)R173.C and (T0298)E177.C only 0.000 apart, marking (T0298)E177.C as missing
WARNING: atoms too close: (T0298)Q174.N and (T0298)L178.N only 0.000 apart, marking (T0298)Q174.N as missing
WARNING: atoms too close: (T0298)Q174.CA and (T0298)L178.CA only 0.000 apart, marking (T0298)Q174.CA as missing
WARNING: atoms too close: (T0298)L184.C and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)E185.N and (T0298)D205.N only 0.000 apart, marking (T0298)E185.N as missing
WARNING: atoms too close: (T0298)E185.CA and (T0298)D205.CA only 0.000 apart, marking (T0298)E185.CA as missing
WARNING: atoms too close: (T0298)V220.C and (T0298)L224.C only 0.000 apart, marking (T0298)L224.C as missing
WARNING: atoms too close: (T0298)Q221.N and (T0298)G225.N only 0.000 apart, marking (T0298)Q221.N as missing
WARNING: atoms too close: (T0298)Q221.CA and (T0298)G225.CA only 0.000 apart, marking (T0298)Q221.CA as missing
WARNING: atoms too close: (T0298)V283.C and (T0298)G284.C only 0.000 apart, marking (T0298)G284.C as missing
WARNING: atoms too close: (T0298)G284.N and (T0298)D285.N only 0.000 apart, marking (T0298)G284.N as missing
WARNING: atoms too close: (T0298)G284.CA and (T0298)D285.CA only 0.000 apart, marking (T0298)G284.CA as missing
WARNING: atoms too close: (T0298)G295.C and (T0298)R296.C only 0.000 apart, marking (T0298)R296.C as missing
WARNING: atoms too close: (T0298)R296.N and (T0298)V297.N only 0.000 apart, marking (T0298)R296.N as missing
WARNING: atoms too close: (T0298)R296.CA and (T0298)V297.CA only 0.000 apart, marking (T0298)R296.CA as missing
WARNING: atoms too close: (T0298)Q301.C and (T0298)A302.C only 0.000 apart, marking (T0298)A302.C as missing
WARNING: atoms too close: (T0298)A302.N and (T0298)D303.N only 0.000 apart, marking (T0298)A302.N as missing
WARNING: atoms too close: (T0298)A302.CA and (T0298)D303.CA only 0.000 apart, marking (T0298)A302.CA as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# command:# naming current conformation align3
# command:# ReadConformPDB reading from PDB file T0298.undertaker-align.pdb looking for model 4
WARNING: atoms too close: (T0298)G11.C and (T0298)A12.C only 0.000 apart, marking (T0298)A12.C as missing
WARNING: atoms too close: (T0298)A12.N and (T0298)T13.N only 0.000 apart, marking (T0298)A12.N as missing
WARNING: atoms too close: (T0298)A12.CA and (T0298)T13.CA only 0.000 apart, marking (T0298)A12.CA as missing
WARNING: atoms too close: (T0298)I94.C and (T0298)D95.C only 0.000 apart, marking (T0298)D95.C as missing
WARNING: atoms too close: (T0298)D95.N and (T0298)L96.N only 0.000 apart, marking (T0298)D95.N as missing
WARNING: atoms too close: (T0298)D95.CA and (T0298)L96.CA only 0.000 apart, marking (T0298)D95.CA as missing
WARNING: atoms too close: (T0298)E101.C and (T0298)P102.C only 0.000 apart, marking (T0298)P102.C as missing
WARNING: atoms too close: (T0298)P102.N and (T0298)S103.N only 0.000 apart, marking (T0298)P102.N as missing
WARNING: atoms too close: (T0298)P102.CA and (T0298)S103.CA only 0.000 apart, marking (T0298)P102.CA as missing
WARNING: atoms too close: (T0298)S119.C and (T0298)A121.C only 0.000 apart, marking (T0298)A121.C as missing
WARNING: atoms too close: (T0298)Q120.N and (T0298)A122.N only 0.000 apart, marking (T0298)Q120.N as missing
WARNING: atoms too close: (T0298)Q120.CA and (T0298)A122.CA only 0.000 apart, marking (T0298)Q120.CA as missing
WARNING: atoms too close: (T0298)A134.C and (T0298)E135.C only 0.000 apart, marking (T0298)E135.C as missing
WARNING: atoms too close: (T0298)E135.N and (T0298)L136.N only 0.000 apart, marking (T0298)E135.N as missing
WARNING: atoms too close: (T0298)E135.CA and (T0298)L136.CA only 0.000 apart, marking (T0298)E135.CA as missing
WARNING: atoms too close: (T0298)L163.C and (T0298)T175.C only 0.000 apart, marking (T0298)T175.C as missing
WARNING: atoms too close: (T0298)G164.N and (T0298)A176.N only 0.000 apart, marking (T0298)G164.N as missing
WARNING: atoms too close: (T0298)G164.CA and (T0298)A176.CA only 0.000 apart, marking (T0298)G164.CA as missing
WARNING: atoms too close: (T0298)A199.C and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)Q200.N and (T0298)D205.N only 0.000 apart, marking (T0298)Q200.N as missing
WARNING: atoms too close: (T0298)Q200.CA and (T0298)D205.CA only 0.000 apart, marking (T0298)Q200.CA as missing
WARNING: atoms too close: (T0298)A222.C and (T0298)G229.C only 0.000 apart, marking (T0298)G229.C as missing
WARNING: atoms too close: (T0298)L223.N and (T0298)P230.N only 0.000 apart, marking (T0298)L223.N as missing
WARNING: atoms too close: (T0298)L223.CA and (T0298)P230.CA only 0.000 apart, marking (T0298)L223.CA as missing
WARNING: atoms too close: (T0298)N315.C and (T0298)V316.C only 0.000 apart, marking (T0298)V316.C as missing
WARNING: atoms too close: (T0298)V316.N and (T0298)R317.N only 0.000 apart, marking (T0298)V316.N as missing
WARNING: atoms too close: (T0298)V316.CA and (T0298)R317.CA only 0.000 apart, marking (T0298)V316.CA as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# command:# naming current conformation align4
# command:# ReadConformPDB reading from PDB file T0298.undertaker-align.pdb looking for model 5
WARNING: atoms too close: (T0298)G11.C and (T0298)A12.C only 0.000 apart, marking (T0298)A12.C as missing
WARNING: atoms too close: (T0298)A12.N and (T0298)T13.N only 0.000 apart, marking (T0298)A12.N as missing
WARNING: atoms too close: (T0298)A12.CA and (T0298)T13.CA only 0.000 apart, marking (T0298)A12.CA as missing
WARNING: atoms too close: (T0298)I94.C and (T0298)D95.C only 0.000 apart, marking (T0298)D95.C as missing
WARNING: atoms too close: (T0298)D95.N and (T0298)L96.N only 0.000 apart, marking (T0298)D95.N as missing
WARNING: atoms too close: (T0298)D95.CA and (T0298)L96.CA only 0.000 apart, marking (T0298)D95.CA as missing
WARNING: atoms too close: (T0298)S119.C and (T0298)A121.C only 0.000 apart, marking (T0298)A121.C as missing
WARNING: atoms too close: (T0298)Q120.N and (T0298)A122.N only 0.000 apart, marking (T0298)Q120.N as missing
WARNING: atoms too close: (T0298)Q120.CA and (T0298)A122.CA only 0.000 apart, marking (T0298)Q120.CA as missing
WARNING: atoms too close: (T0298)A134.C and (T0298)E135.C only 0.000 apart, marking (T0298)E135.C as missing
WARNING: atoms too close: (T0298)E135.N and (T0298)L136.N only 0.000 apart, marking (T0298)E135.N as missing
WARNING: atoms too close: (T0298)E135.CA and (T0298)L136.CA only 0.000 apart, marking (T0298)E135.CA as missing
WARNING: atoms too close: (T0298)L163.C and (T0298)T175.C only 0.000 apart, marking (T0298)T175.C as missing
WARNING: atoms too close: (T0298)G164.N and (T0298)A176.N only 0.000 apart, marking (T0298)G164.N as missing
WARNING: atoms too close: (T0298)G164.CA and (T0298)A176.CA only 0.000 apart, marking (T0298)G164.CA as missing
WARNING: atoms too close: (T0298)A199.C and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)Q200.N and (T0298)D205.N only 0.000 apart, marking (T0298)Q200.N as missing
WARNING: atoms too close: (T0298)Q200.CA and (T0298)D205.CA only 0.000 apart, marking (T0298)Q200.CA as missing
WARNING: atoms too close: (T0298)A222.C and (T0298)G229.C only 0.000 apart, marking (T0298)G229.C as missing
WARNING: atoms too close: (T0298)L223.N and (T0298)P230.N only 0.000 apart, marking (T0298)L223.N as missing
WARNING: atoms too close: (T0298)L223.CA and (T0298)P230.CA only 0.000 apart, marking (T0298)L223.CA as missing
WARNING: atoms too close: (T0298)N315.C and (T0298)V316.C only 0.000 apart, marking (T0298)V316.C as missing
WARNING: atoms too close: (T0298)V316.N and (T0298)R317.N only 0.000 apart, marking (T0298)V316.N as missing
WARNING: atoms too close: (T0298)V316.CA and (T0298)R317.CA only 0.000 apart, marking (T0298)V316.CA as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# command:# naming current conformation align5
# command:# Prefix for input files set to decoys/
# command:# reading script from file read-pdb+servers.under
# ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try1-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try1-opt1.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try1-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try1-opt2.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try1-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try2-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 296
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try2-opt1.pdb.gz looking for model 1
# Found a chain break before 296
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try2-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try2-opt2.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try2-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try3-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 315
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try3-opt1.pdb.gz looking for model 1
# Found a chain break before 315
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try3-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 277
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try3-opt2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try3-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try4-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 288
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try4-opt1.pdb.gz looking for model 1
# Found a chain break before 288
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try4-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 309
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try4-opt2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try4-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try5-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 277
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try5-opt1.pdb.gz looking for model 1
# Found a chain break before 277
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try5-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 279
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try5-opt2.pdb.gz looking for model 1
# Found a chain break before 300
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try5-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 300
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try6-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try6-opt1.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try6-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 270
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try6-opt2.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try6-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try7-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try7-opt1.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try7-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 270
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try7-opt2.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try7-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try8-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try8-opt1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try8-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 321
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try8-opt2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try8-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try9-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try9-opt1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try9-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 305
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try9-opt2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try9-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file from-dimer-try1-opt2-A.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file ../dimer/decoys/T0298.try1-opt1-scwrl.pdb.gz looking for chain 'A' model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation dimer//try1-opt1-scwrl
# ReadConformPDB reading from PDB file ../dimer/decoys/T0298.try1-opt1.pdb.gz looking for chain 'A' model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation dimer//try1-opt1
# ReadConformPDB reading from PDB file ../dimer/decoys/T0298.try1-opt2.gromacs0.pdb.gz looking for chain 'A' model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation dimer//try1-opt2.gromacs0
# ReadConformPDB reading from PDB file ../dimer/decoys/T0298.try1-opt2.pdb.gz looking for chain 'A' model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation dimer//try1-opt2
# ReadConformPDB reading from PDB file ../dimer/decoys/T0298.try1-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation dimer//try1-opt2.repack-nonPC
# ReadConformPDB reading from PDB file ../dimer/decoys/T0298.try1-opt2.unpack.pdb.gz looking for chain 'A' model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation dimer//try1-opt2.unpack
# ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try7-1t4bA.pdb.gz looking for chain 'A' model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation dimer//dimer-try7-1t4bA
# ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try8-1t4bA.pdb.gz looking for chain 'A' model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation dimer//dimer-try8-1t4bA
# ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try9-1t4bA.pdb.gz looking for chain 'A' model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation dimer//dimer-try9-1t4bA
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2093044606.pdb -s /var/tmp/to_scwrl_2093044606.seq -o /var/tmp/from_scwrl_2093044606.pdb > /var/tmp/scwrl_2093044606.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2093044606.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1153537126.pdb -s /var/tmp/to_scwrl_1153537126.seq -o /var/tmp/from_scwrl_1153537126.pdb > /var/tmp/scwrl_1153537126.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1153537126.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1179337548.pdb -s /var/tmp/to_scwrl_1179337548.seq -o /var/tmp/from_scwrl_1179337548.pdb > /var/tmp/scwrl_1179337548.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1179337548.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_997272859.pdb -s /var/tmp/to_scwrl_997272859.seq -o /var/tmp/from_scwrl_997272859.pdb > /var/tmp/scwrl_997272859.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_997272859.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1735112257.pdb -s /var/tmp/to_scwrl_1735112257.seq -o /var/tmp/from_scwrl_1735112257.pdb > /var/tmp/scwrl_1735112257.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1735112257.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1375965935.pdb -s /var/tmp/to_scwrl_1375965935.seq -o /var/tmp/from_scwrl_1375965935.pdb > /var/tmp/scwrl_1375965935.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375965935.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1789352747.pdb -s /var/tmp/to_scwrl_1789352747.seq -o /var/tmp/from_scwrl_1789352747.pdb > /var/tmp/scwrl_1789352747.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1789352747.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1860989208.pdb -s /var/tmp/to_scwrl_1860989208.seq -o /var/tmp/from_scwrl_1860989208.pdb > /var/tmp/scwrl_1860989208.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1860989208.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1895200914.pdb -s /var/tmp/to_scwrl_1895200914.seq -o /var/tmp/from_scwrl_1895200914.pdb > /var/tmp/scwrl_1895200914.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1895200914.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_882494599.pdb -s /var/tmp/to_scwrl_882494599.seq -o /var/tmp/from_scwrl_882494599.pdb > /var/tmp/scwrl_882494599.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_882494599.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1648299743.pdb -s /var/tmp/to_scwrl_1648299743.seq -o /var/tmp/from_scwrl_1648299743.pdb > /var/tmp/scwrl_1648299743.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1648299743.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_TS1-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_673129699.pdb -s /var/tmp/to_scwrl_673129699.seq -o /var/tmp/from_scwrl_673129699.pdb > /var/tmp/scwrl_673129699.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_673129699.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_TS2-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1482929629.pdb -s /var/tmp/to_scwrl_1482929629.seq -o /var/tmp/from_scwrl_1482929629.pdb > /var/tmp/scwrl_1482929629.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1482929629.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_TS3-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_660816571.pdb -s /var/tmp/to_scwrl_660816571.seq -o /var/tmp/from_scwrl_660816571.pdb > /var/tmp/scwrl_660816571.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_660816571.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_TS4-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1579313690.pdb -s /var/tmp/to_scwrl_1579313690.seq -o /var/tmp/from_scwrl_1579313690.pdb > /var/tmp/scwrl_1579313690.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1579313690.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_TS5-scwrl
# ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1147970951.pdb -s /var/tmp/to_scwrl_1147970951.seq -o /var/tmp/from_scwrl_1147970951.pdb > /var/tmp/scwrl_1147970951.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1147970951.pdb
# conformation set from SCWRL output
# naming current conformation 3Dpro_TS1-scwrl
# ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_211482663.pdb -s /var/tmp/to_scwrl_211482663.seq -o /var/tmp/from_scwrl_211482663.pdb > /var/tmp/scwrl_211482663.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_211482663.pdb
# conformation set from SCWRL output
# naming current conformation 3Dpro_TS2-scwrl
# ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1
# Found a chain break before 305
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_979812547.pdb -s /var/tmp/to_scwrl_979812547.seq -o /var/tmp/from_scwrl_979812547.pdb > /var/tmp/scwrl_979812547.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_979812547.pdb
# conformation set from SCWRL output
# naming current conformation 3Dpro_TS3-scwrl
# ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1
# Found a chain break before 235
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_70470061.pdb -s /var/tmp/to_scwrl_70470061.seq -o /var/tmp/from_scwrl_70470061.pdb > /var/tmp/scwrl_70470061.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_70470061.pdb
# conformation set from SCWRL output
# naming current conformation 3Dpro_TS4-scwrl
# ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1
# Found a chain break before 331
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1598902570.pdb -s /var/tmp/to_scwrl_1598902570.seq -o /var/tmp/from_scwrl_1598902570.pdb > /var/tmp/scwrl_1598902570.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1598902570.pdb
# conformation set from SCWRL output
# naming current conformation 3Dpro_TS5-scwrl
# ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_663951473.pdb -s /var/tmp/to_scwrl_663951473.seq -o /var/tmp/from_scwrl_663951473.pdb > /var/tmp/scwrl_663951473.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_663951473.pdb
# conformation set from SCWRL output
# naming current conformation ABIpro_TS1-scwrl
# ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_484742987.pdb -s /var/tmp/to_scwrl_484742987.seq -o /var/tmp/from_scwrl_484742987.pdb > /var/tmp/scwrl_484742987.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_484742987.pdb
# conformation set from SCWRL output
# naming current conformation ABIpro_TS2-scwrl
# ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_320794352.pdb -s /var/tmp/to_scwrl_320794352.seq -o /var/tmp/from_scwrl_320794352.pdb > /var/tmp/scwrl_320794352.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_320794352.pdb
# conformation set from SCWRL output
# naming current conformation ABIpro_TS3-scwrl
# ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1
# Found a chain break before 324
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_452687455.pdb -s /var/tmp/to_scwrl_452687455.seq -o /var/tmp/from_scwrl_452687455.pdb > /var/tmp/scwrl_452687455.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_452687455.pdb
# conformation set from SCWRL output
# naming current conformation ABIpro_TS4-scwrl
# ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1
# Found a chain break before 321
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_928144921.pdb -s /var/tmp/to_scwrl_928144921.seq -o /var/tmp/from_scwrl_928144921.pdb > /var/tmp/scwrl_928144921.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_928144921.pdb
# conformation set from SCWRL output
# naming current conformation ABIpro_TS5-scwrl
# ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation BayesHH_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_420036382.pdb -s /var/tmp/to_scwrl_420036382.seq -o /var/tmp/from_scwrl_420036382.pdb > /var/tmp/scwrl_420036382.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_420036382.pdb
# conformation set from SCWRL output
# naming current conformation BayesHH_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1
# Found a chain break before 332
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1900248515.pdb -s /var/tmp/to_scwrl_1900248515.seq -o /var/tmp/from_scwrl_1900248515.pdb > /var/tmp/scwrl_1900248515.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1900248515.pdb
# conformation set from SCWRL output
# naming current conformation Bilab-ENABLE_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1622170572.pdb -s /var/tmp/to_scwrl_1622170572.seq -o /var/tmp/from_scwrl_1622170572.pdb > /var/tmp/scwrl_1622170572.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1622170572.pdb
# conformation set from SCWRL output
# naming current conformation Bilab-ENABLE_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1655129.pdb -s /var/tmp/to_scwrl_1655129.seq -o /var/tmp/from_scwrl_1655129.pdb > /var/tmp/scwrl_1655129.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1655129.pdb
# conformation set from SCWRL output
# naming current conformation Bilab-ENABLE_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_963548624.pdb -s /var/tmp/to_scwrl_963548624.seq -o /var/tmp/from_scwrl_963548624.pdb > /var/tmp/scwrl_963548624.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_963548624.pdb
# conformation set from SCWRL output
# naming current conformation Bilab-ENABLE_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1699739508.pdb -s /var/tmp/to_scwrl_1699739508.seq -o /var/tmp/from_scwrl_1699739508.pdb > /var/tmp/scwrl_1699739508.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1699739508.pdb
# conformation set from SCWRL output
# naming current conformation Bilab-ENABLE_TS5-scwrl
# ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1
# Found a chain break before 328
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2094699735.pdb -s /var/tmp/to_scwrl_2094699735.seq -o /var/tmp/from_scwrl_2094699735.pdb > /var/tmp/scwrl_2094699735.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2094699735.pdb
# conformation set from SCWRL output
# naming current conformation CIRCLE_TS1-scwrl
# ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2117085750.pdb -s /var/tmp/to_scwrl_2117085750.seq -o /var/tmp/from_scwrl_2117085750.pdb > /var/tmp/scwrl_2117085750.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2117085750.pdb
# conformation set from SCWRL output
# naming current conformation CIRCLE_TS2-scwrl
# ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_731593410.pdb -s /var/tmp/to_scwrl_731593410.seq -o /var/tmp/from_scwrl_731593410.pdb > /var/tmp/scwrl_731593410.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_731593410.pdb
# conformation set from SCWRL output
# naming current conformation CIRCLE_TS3-scwrl
# ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_944488947.pdb -s /var/tmp/to_scwrl_944488947.seq -o /var/tmp/from_scwrl_944488947.pdb > /var/tmp/scwrl_944488947.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_944488947.pdb
# conformation set from SCWRL output
# naming current conformation CIRCLE_TS4-scwrl
# ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1704714360.pdb -s /var/tmp/to_scwrl_1704714360.seq -o /var/tmp/from_scwrl_1704714360.pdb > /var/tmp/scwrl_1704714360.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1704714360.pdb
# conformation set from SCWRL output
# naming current conformation CIRCLE_TS5-scwrl
# ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CPHmodels_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2107559345.pdb -s /var/tmp/to_scwrl_2107559345.seq -o /var/tmp/from_scwrl_2107559345.pdb > /var/tmp/scwrl_2107559345.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2107559345.pdb
# conformation set from SCWRL output
# naming current conformation CPHmodels_TS1-scwrl
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_586358047.pdb -s /var/tmp/to_scwrl_586358047.seq -o /var/tmp/from_scwrl_586358047.pdb > /var/tmp/scwrl_586358047.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_586358047.pdb
# conformation set from SCWRL output
# naming current conformation CaspIta-FOX_TS1-scwrl
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1
WARNING: atoms too close: (T0298)G202.C and (T0298)A203.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A203.CA only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A203.CA only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A203.CB only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A203.CB only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A203.CB only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A203.O only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A203.O only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A203.O only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A203.O only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A206.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A206.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A206.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A206.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A206.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A206.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A206.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A206.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A206.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A206.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)G208.N only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)G208.N only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)G208.N only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)G208.N only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)G208.N only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)G208.N only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)G208.N only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)G208.N only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)G208.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)G208.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)G208.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)G208.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)G208.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)G208.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)G208.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)G208.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)G208.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)G208.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)G208.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)G208.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)G208.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)G208.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)G208.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)G208.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)G208.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)G208.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)G208.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)G208.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)G208.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)G208.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)G208.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)G208.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)G208.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)G208.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)G208.N only 0.000 apart, marking (T0298)G208.N as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.N only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.N only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.N only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.N only 0.000 apart, marking (T0298)G208.N as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.N only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.N only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.N only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.N only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.N only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.N only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.N only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.N only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.N only 0.000 apart, marking (T0298)H209.N as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)S210.N only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)S210.N only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.N only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.N only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)S210.N only 0.000 apart, marking (T0298)H209.N as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)S210.N only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)S210.N only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.N only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)S210.N only 0.000 apart, marking (T0298)G208.N as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)S210.N only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)S210.N only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.N only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.N only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.N only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.N only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.N only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.N only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)S210.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)S210.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)S210.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)S210.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)S210.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)S210.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)S210.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)S210.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)S210.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)S210.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)S210.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)S210.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)S210.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)S210.N only 0.000 apart, marking (T0298)S210.N as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)A211.N only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)A211.N only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.N only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.N only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.N only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)A211.N only 0.000 apart, marking (T0298)S210.N as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)A211.N only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)A211.N only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.N only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.N only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)A211.N only 0.000 apart, marking (T0298)H209.N as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)A211.N only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)A211.N only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.N only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)A211.N only 0.000 apart, marking (T0298)G208.N as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)A211.N only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)A211.N only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.N only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.N only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.N only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.N only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.N only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.N only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)A211.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)A211.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)A211.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A211.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A211.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A211.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A211.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A211.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A211.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A211.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A211.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A211.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A211.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A211.N only 0.000 apart, marking (T0298)A211.N as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.N only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.N only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.N only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.N only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.N only 0.000 apart, marking (T0298)A211.N as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.N only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.N only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.N only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.N only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.N only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.N only 0.000 apart, marking (T0298)S210.N as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.N only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.N only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.N only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.N only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.N only 0.000 apart, marking (T0298)H209.N as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.N only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.N only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.N only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.N only 0.000 apart, marking (T0298)G208.N as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.N only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.N only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.N only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.N only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.N only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.N only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.N only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.N only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.N only 0.000 apart, marking (T0298)I212.N as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.N only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.N only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.N only 0.000 apart, marking (T0298)I212.N as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.N only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.N only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.N only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.N only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.N only 0.000 apart, marking (T0298)A211.N as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.N only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.N only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.N only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.N only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.N only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.N only 0.000 apart, marking (T0298)S210.N as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.N only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.N only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.N only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.N only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.N only 0.000 apart, marking (T0298)H209.N as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.N only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.N only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.N only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.N only 0.000 apart, marking (T0298)G208.N as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.N only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.N only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.N only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.N only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.N only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.N only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.N only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.N only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.N only 0.000 apart, marking (T0298)E213.N as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E213.CD and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E213.OE1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E213.CD and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E213.OE2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.OE1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.CD and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.OE2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.OE1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.CD and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1418219922.pdb -s /var/tmp/to_scwrl_1418219922.seq -o /var/tmp/from_scwrl_1418219922.pdb > /var/tmp/scwrl_1418219922.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1418219922.pdb
# conformation set from SCWRL output
# naming current conformation CaspIta-FOX_TS2-scwrl
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1855276613.pdb -s /var/tmp/to_scwrl_1855276613.seq -o /var/tmp/from_scwrl_1855276613.pdb > /var/tmp/scwrl_1855276613.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1855276613.pdb
# conformation set from SCWRL output
# naming current conformation CaspIta-FOX_TS3-scwrl
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1468852646.pdb -s /var/tmp/to_scwrl_1468852646.seq -o /var/tmp/from_scwrl_1468852646.pdb > /var/tmp/scwrl_1468852646.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1468852646.pdb
# conformation set from SCWRL output
# naming current conformation CaspIta-FOX_TS4-scwrl
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_919036019.pdb -s /var/tmp/to_scwrl_919036019.seq -o /var/tmp/from_scwrl_919036019.pdb > /var/tmp/scwrl_919036019.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_919036019.pdb
# conformation set from SCWRL output
# naming current conformation CaspIta-FOX_TS5-scwrl
# ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Distill_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_380922665.pdb -s /var/tmp/to_scwrl_380922665.seq -o /var/tmp/from_scwrl_380922665.pdb > /var/tmp/scwrl_380922665.log
Error: Couldn't open file /var/tmp/from_scwrl_380922665.pdb or /var/tmp/from_scwrl_380922665.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_380922665_b.pdb or decoys//var/tmp/from_scwrl_380922665_b.pdb.gz for input
Trying /var/tmp/from_scwrl_380922665_b.pdb
Error: Couldn't open file /var/tmp/from_scwrl_380922665_b.pdb or /var/tmp/from_scwrl_380922665_b.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_380922665_a.pdb or decoys//var/tmp/from_scwrl_380922665_a.pdb.gz for input
Trying /var/tmp/from_scwrl_380922665_a.pdb
Error: Couldn't open file /var/tmp/from_scwrl_380922665_a.pdb or /var/tmp/from_scwrl_380922665_a.pdb.gz for input
Error: can't open any of /var/tmp/from_scwrl_380922665.pdb or /var/tmp/from_scwrl_380922665_b.pdb or /var/tmp/from_scwrl_380922665_a.pdb
Error: no new SCWRL conformation added
# naming current conformation Distill_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Distill_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_804298629.pdb -s /var/tmp/to_scwrl_804298629.seq -o /var/tmp/from_scwrl_804298629.pdb > /var/tmp/scwrl_804298629.log
Error: Couldn't open file /var/tmp/from_scwrl_804298629.pdb or /var/tmp/from_scwrl_804298629.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_804298629_b.pdb or decoys//var/tmp/from_scwrl_804298629_b.pdb.gz for input
Trying /var/tmp/from_scwrl_804298629_b.pdb
Error: Couldn't open file /var/tmp/from_scwrl_804298629_b.pdb or /var/tmp/from_scwrl_804298629_b.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_804298629_a.pdb or decoys//var/tmp/from_scwrl_804298629_a.pdb.gz for input
Trying /var/tmp/from_scwrl_804298629_a.pdb
Error: Couldn't open file /var/tmp/from_scwrl_804298629_a.pdb or /var/tmp/from_scwrl_804298629_a.pdb.gz for input
Error: can't open any of /var/tmp/from_scwrl_804298629.pdb or /var/tmp/from_scwrl_804298629_b.pdb or /var/tmp/from_scwrl_804298629_a.pdb
Error: no new SCWRL conformation added
# naming current conformation Distill_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Distill_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1579852590.pdb -s /var/tmp/to_scwrl_1579852590.seq -o /var/tmp/from_scwrl_1579852590.pdb > /var/tmp/scwrl_1579852590.log
Error: Couldn't open file /var/tmp/from_scwrl_1579852590.pdb or /var/tmp/from_scwrl_1579852590.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1579852590_b.pdb or decoys//var/tmp/from_scwrl_1579852590_b.pdb.gz for input
Trying /var/tmp/from_scwrl_1579852590_b.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1579852590_b.pdb or /var/tmp/from_scwrl_1579852590_b.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1579852590_a.pdb or decoys//var/tmp/from_scwrl_1579852590_a.pdb.gz for input
Trying /var/tmp/from_scwrl_1579852590_a.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1579852590_a.pdb or /var/tmp/from_scwrl_1579852590_a.pdb.gz for input
Error: can't open any of /var/tmp/from_scwrl_1579852590.pdb or /var/tmp/from_scwrl_1579852590_b.pdb or /var/tmp/from_scwrl_1579852590_a.pdb
Error: no new SCWRL conformation added
# naming current conformation Distill_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Distill_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1960236355.pdb -s /var/tmp/to_scwrl_1960236355.seq -o /var/tmp/from_scwrl_1960236355.pdb > /var/tmp/scwrl_1960236355.log
Error: Couldn't open file /var/tmp/from_scwrl_1960236355.pdb or /var/tmp/from_scwrl_1960236355.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1960236355_b.pdb or decoys//var/tmp/from_scwrl_1960236355_b.pdb.gz for input
Trying /var/tmp/from_scwrl_1960236355_b.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1960236355_b.pdb or /var/tmp/from_scwrl_1960236355_b.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1960236355_a.pdb or decoys//var/tmp/from_scwrl_1960236355_a.pdb.gz for input
Trying /var/tmp/from_scwrl_1960236355_a.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1960236355_a.pdb or /var/tmp/from_scwrl_1960236355_a.pdb.gz for input
Error: can't open any of /var/tmp/from_scwrl_1960236355.pdb or /var/tmp/from_scwrl_1960236355_b.pdb or /var/tmp/from_scwrl_1960236355_a.pdb
Error: no new SCWRL conformation added
# naming current conformation Distill_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Distill_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1952269581.pdb -s /var/tmp/to_scwrl_1952269581.seq -o /var/tmp/from_scwrl_1952269581.pdb > /var/tmp/scwrl_1952269581.log
Error: Couldn't open file /var/tmp/from_scwrl_1952269581.pdb or /var/tmp/from_scwrl_1952269581.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1952269581_b.pdb or decoys//var/tmp/from_scwrl_1952269581_b.pdb.gz for input
Trying /var/tmp/from_scwrl_1952269581_b.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1952269581_b.pdb or /var/tmp/from_scwrl_1952269581_b.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1952269581_a.pdb or decoys//var/tmp/from_scwrl_1952269581_a.pdb.gz for input
Trying /var/tmp/from_scwrl_1952269581_a.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1952269581_a.pdb or /var/tmp/from_scwrl_1952269581_a.pdb.gz for input
Error: can't open any of /var/tmp/from_scwrl_1952269581.pdb or /var/tmp/from_scwrl_1952269581_b.pdb or /var/tmp/from_scwrl_1952269581_a.pdb
Error: no new SCWRL conformation added
# naming current conformation Distill_TS5-scwrl
# ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1791335253.pdb -s /var/tmp/to_scwrl_1791335253.seq -o /var/tmp/from_scwrl_1791335253.pdb > /var/tmp/scwrl_1791335253.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1791335253.pdb
# conformation set from SCWRL output
# naming current conformation FAMSD_TS1-scwrl
# ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_792565255.pdb -s /var/tmp/to_scwrl_792565255.seq -o /var/tmp/from_scwrl_792565255.pdb > /var/tmp/scwrl_792565255.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_792565255.pdb
# conformation set from SCWRL output
# naming current conformation FAMSD_TS2-scwrl
# ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2022739642.pdb -s /var/tmp/to_scwrl_2022739642.seq -o /var/tmp/from_scwrl_2022739642.pdb > /var/tmp/scwrl_2022739642.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2022739642.pdb
# conformation set from SCWRL output
# naming current conformation FAMSD_TS3-scwrl
# ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1242754176.pdb -s /var/tmp/to_scwrl_1242754176.seq -o /var/tmp/from_scwrl_1242754176.pdb > /var/tmp/scwrl_1242754176.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1242754176.pdb
# conformation set from SCWRL output
# naming current conformation FAMSD_TS4-scwrl
# ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1456516728.pdb -s /var/tmp/to_scwrl_1456516728.seq -o /var/tmp/from_scwrl_1456516728.pdb > /var/tmp/scwrl_1456516728.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1456516728.pdb
# conformation set from SCWRL output
# naming current conformation FAMSD_TS5-scwrl
# ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_359998982.pdb -s /var/tmp/to_scwrl_359998982.seq -o /var/tmp/from_scwrl_359998982.pdb > /var/tmp/scwrl_359998982.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_359998982.pdb
# conformation set from SCWRL output
# naming current conformation FAMS_TS1-scwrl
# ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FAMS_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1563548528.pdb -s /var/tmp/to_scwrl_1563548528.seq -o /var/tmp/from_scwrl_1563548528.pdb > /var/tmp/scwrl_1563548528.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1563548528.pdb
# conformation set from SCWRL output
# naming current conformation FAMS_TS2-scwrl
# ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1909204183.pdb -s /var/tmp/to_scwrl_1909204183.seq -o /var/tmp/from_scwrl_1909204183.pdb > /var/tmp/scwrl_1909204183.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1909204183.pdb
# conformation set from SCWRL output
# naming current conformation FAMS_TS3-scwrl
# ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FAMS_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1288143902.pdb -s /var/tmp/to_scwrl_1288143902.seq -o /var/tmp/from_scwrl_1288143902.pdb > /var/tmp/scwrl_1288143902.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1288143902.pdb
# conformation set from SCWRL output
# naming current conformation FAMS_TS4-scwrl
# ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1
# Found a chain break before 328
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1983584910.pdb -s /var/tmp/to_scwrl_1983584910.seq -o /var/tmp/from_scwrl_1983584910.pdb > /var/tmp/scwrl_1983584910.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983584910.pdb
# conformation set from SCWRL output
# naming current conformation FAMS_TS5-scwrl
# ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1661969051.pdb -s /var/tmp/to_scwrl_1661969051.seq -o /var/tmp/from_scwrl_1661969051.pdb > /var/tmp/scwrl_1661969051.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1661969051.pdb
# conformation set from SCWRL output
# naming current conformation FOLDpro_TS1-scwrl
# ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1
# Found a chain break before 329
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_762830828.pdb -s /var/tmp/to_scwrl_762830828.seq -o /var/tmp/from_scwrl_762830828.pdb > /var/tmp/scwrl_762830828.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_762830828.pdb
# conformation set from SCWRL output
# naming current conformation FOLDpro_TS2-scwrl
# ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1
# Found a chain break before 330
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1985240039.pdb -s /var/tmp/to_scwrl_1985240039.seq -o /var/tmp/from_scwrl_1985240039.pdb > /var/tmp/scwrl_1985240039.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1985240039.pdb
# conformation set from SCWRL output
# naming current conformation FOLDpro_TS3-scwrl
# ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1
# Found a chain break before 254
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_478034028.pdb -s /var/tmp/to_scwrl_478034028.seq -o /var/tmp/from_scwrl_478034028.pdb > /var/tmp/scwrl_478034028.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_478034028.pdb
# conformation set from SCWRL output
# naming current conformation FOLDpro_TS4-scwrl
# ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1
# Found a chain break before 289
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_315086690.pdb -s /var/tmp/to_scwrl_315086690.seq -o /var/tmp/from_scwrl_315086690.pdb > /var/tmp/scwrl_315086690.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_315086690.pdb
# conformation set from SCWRL output
# naming current conformation FOLDpro_TS5-scwrl
# ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1932456127.pdb -s /var/tmp/to_scwrl_1932456127.seq -o /var/tmp/from_scwrl_1932456127.pdb > /var/tmp/scwrl_1932456127.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1932456127.pdb
# conformation set from SCWRL output
# naming current conformation FORTE1_AL1-scwrl
# ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_447636132.pdb -s /var/tmp/to_scwrl_447636132.seq -o /var/tmp/from_scwrl_447636132.pdb > /var/tmp/scwrl_447636132.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_447636132.pdb
# conformation set from SCWRL output
# naming current conformation FORTE1_AL2-scwrl
# ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1046680100.pdb -s /var/tmp/to_scwrl_1046680100.seq -o /var/tmp/from_scwrl_1046680100.pdb > /var/tmp/scwrl_1046680100.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1046680100.pdb
# conformation set from SCWRL output
# naming current conformation FORTE1_AL3-scwrl
# ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_729461427.pdb -s /var/tmp/to_scwrl_729461427.seq -o /var/tmp/from_scwrl_729461427.pdb > /var/tmp/scwrl_729461427.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_729461427.pdb
# conformation set from SCWRL output
# naming current conformation FORTE1_AL4-scwrl
# ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1
Skipped atom 748, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 750, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_4866845.pdb -s /var/tmp/to_scwrl_4866845.seq -o /var/tmp/from_scwrl_4866845.pdb > /var/tmp/scwrl_4866845.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_4866845.pdb
# conformation set from SCWRL output
# naming current conformation FORTE1_AL5-scwrl
# ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1006755799.pdb -s /var/tmp/to_scwrl_1006755799.seq -o /var/tmp/from_scwrl_1006755799.pdb > /var/tmp/scwrl_1006755799.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1006755799.pdb
# conformation set from SCWRL output
# naming current conformation FORTE2_AL1-scwrl
# ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1315819474.pdb -s /var/tmp/to_scwrl_1315819474.seq -o /var/tmp/from_scwrl_1315819474.pdb > /var/tmp/scwrl_1315819474.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1315819474.pdb
# conformation set from SCWRL output
# naming current conformation FORTE2_AL2-scwrl
# ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1423086767.pdb -s /var/tmp/to_scwrl_1423086767.seq -o /var/tmp/from_scwrl_1423086767.pdb > /var/tmp/scwrl_1423086767.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1423086767.pdb
# conformation set from SCWRL output
# naming current conformation FORTE2_AL3-scwrl
# ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_714548765.pdb -s /var/tmp/to_scwrl_714548765.seq -o /var/tmp/from_scwrl_714548765.pdb > /var/tmp/scwrl_714548765.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_714548765.pdb
# conformation set from SCWRL output
# naming current conformation FORTE2_AL4-scwrl
# ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1
Skipped atom 748, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz
Skipped atom 750, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_637188474.pdb -s /var/tmp/to_scwrl_637188474.seq -o /var/tmp/from_scwrl_637188474.pdb > /var/tmp/scwrl_637188474.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_637188474.pdb
# conformation set from SCWRL output
# naming current conformation FORTE2_AL5-scwrl
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1
# Found a chain break before 332
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_194639140.pdb -s /var/tmp/to_scwrl_194639140.seq -o /var/tmp/from_scwrl_194639140.pdb > /var/tmp/scwrl_194639140.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_194639140.pdb
# conformation set from SCWRL output
# naming current conformation FPSOLVER-SERVER_TS1-scwrl
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1
# Found a chain break before 329
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1095471429.pdb -s /var/tmp/to_scwrl_1095471429.seq -o /var/tmp/from_scwrl_1095471429.pdb > /var/tmp/scwrl_1095471429.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1095471429.pdb
# conformation set from SCWRL output
# naming current conformation FPSOLVER-SERVER_TS2-scwrl
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1
# Found a chain break before 325
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1441487102.pdb -s /var/tmp/to_scwrl_1441487102.seq -o /var/tmp/from_scwrl_1441487102.pdb > /var/tmp/scwrl_1441487102.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1441487102.pdb
# conformation set from SCWRL output
# naming current conformation FPSOLVER-SERVER_TS3-scwrl
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1
# Found a chain break before 331
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1774491730.pdb -s /var/tmp/to_scwrl_1774491730.seq -o /var/tmp/from_scwrl_1774491730.pdb > /var/tmp/scwrl_1774491730.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1774491730.pdb
# conformation set from SCWRL output
# naming current conformation FPSOLVER-SERVER_TS4-scwrl
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1
# Found a chain break before 329
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_908224139.pdb -s /var/tmp/to_scwrl_908224139.seq -o /var/tmp/from_scwrl_908224139.pdb > /var/tmp/scwrl_908224139.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_908224139.pdb
# conformation set from SCWRL output
# naming current conformation FPSOLVER-SERVER_TS5-scwrl
# ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1246273036.pdb -s /var/tmp/to_scwrl_1246273036.seq -o /var/tmp/from_scwrl_1246273036.pdb > /var/tmp/scwrl_1246273036.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1246273036.pdb
# conformation set from SCWRL output
# naming current conformation FUGMOD_TS1-scwrl
# ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1418343336.pdb -s /var/tmp/to_scwrl_1418343336.seq -o /var/tmp/from_scwrl_1418343336.pdb > /var/tmp/scwrl_1418343336.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1418343336.pdb
# conformation set from SCWRL output
# naming current conformation FUGMOD_TS2-scwrl
# ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1700789393.pdb -s /var/tmp/to_scwrl_1700789393.seq -o /var/tmp/from_scwrl_1700789393.pdb > /var/tmp/scwrl_1700789393.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1700789393.pdb
# conformation set from SCWRL output
# naming current conformation FUGMOD_TS3-scwrl
# ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1121529031.pdb -s /var/tmp/to_scwrl_1121529031.seq -o /var/tmp/from_scwrl_1121529031.pdb > /var/tmp/scwrl_1121529031.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1121529031.pdb
# conformation set from SCWRL output
# naming current conformation FUGMOD_TS4-scwrl
# ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_513613866.pdb -s /var/tmp/to_scwrl_513613866.seq -o /var/tmp/from_scwrl_513613866.pdb > /var/tmp/scwrl_513613866.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_513613866.pdb
# conformation set from SCWRL output
# naming current conformation FUGMOD_TS5-scwrl
# ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1009822475.pdb -s /var/tmp/to_scwrl_1009822475.seq -o /var/tmp/from_scwrl_1009822475.pdb > /var/tmp/scwrl_1009822475.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1009822475.pdb
# conformation set from SCWRL output
# naming current conformation FUGUE_AL1-scwrl
# ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1481528013.pdb -s /var/tmp/to_scwrl_1481528013.seq -o /var/tmp/from_scwrl_1481528013.pdb > /var/tmp/scwrl_1481528013.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1481528013.pdb
# conformation set from SCWRL output
# naming current conformation FUGUE_AL2-scwrl
# ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2077162394.pdb -s /var/tmp/to_scwrl_2077162394.seq -o /var/tmp/from_scwrl_2077162394.pdb > /var/tmp/scwrl_2077162394.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2077162394.pdb
# conformation set from SCWRL output
# naming current conformation FUGUE_AL3-scwrl
# ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_771543011.pdb -s /var/tmp/to_scwrl_771543011.seq -o /var/tmp/from_scwrl_771543011.pdb > /var/tmp/scwrl_771543011.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_771543011.pdb
# conformation set from SCWRL output
# naming current conformation FUGUE_AL4-scwrl
# ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_622188269.pdb -s /var/tmp/to_scwrl_622188269.seq -o /var/tmp/from_scwrl_622188269.pdb > /var/tmp/scwrl_622188269.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_622188269.pdb
# conformation set from SCWRL output
# naming current conformation FUGUE_AL5-scwrl
# ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1913263657.pdb -s /var/tmp/to_scwrl_1913263657.seq -o /var/tmp/from_scwrl_1913263657.pdb > /var/tmp/scwrl_1913263657.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1913263657.pdb
# conformation set from SCWRL output
# naming current conformation FUNCTION_TS1-scwrl
# ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_286028416.pdb -s /var/tmp/to_scwrl_286028416.seq -o /var/tmp/from_scwrl_286028416.pdb > /var/tmp/scwrl_286028416.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_286028416.pdb
# conformation set from SCWRL output
# naming current conformation FUNCTION_TS2-scwrl
# ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1385019097.pdb -s /var/tmp/to_scwrl_1385019097.seq -o /var/tmp/from_scwrl_1385019097.pdb > /var/tmp/scwrl_1385019097.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1385019097.pdb
# conformation set from SCWRL output
# naming current conformation FUNCTION_TS3-scwrl
# ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1751020050.pdb -s /var/tmp/to_scwrl_1751020050.seq -o /var/tmp/from_scwrl_1751020050.pdb > /var/tmp/scwrl_1751020050.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1751020050.pdb
# conformation set from SCWRL output
# naming current conformation FUNCTION_TS4-scwrl
# ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_764062444.pdb -s /var/tmp/to_scwrl_764062444.seq -o /var/tmp/from_scwrl_764062444.pdb > /var/tmp/scwrl_764062444.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_764062444.pdb
# conformation set from SCWRL output
# naming current conformation FUNCTION_TS5-scwrl
# ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1700105787.pdb -s /var/tmp/to_scwrl_1700105787.seq -o /var/tmp/from_scwrl_1700105787.pdb > /var/tmp/scwrl_1700105787.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1700105787.pdb
# conformation set from SCWRL output
# naming current conformation Frankenstein_TS5-scwrl
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1535992530.pdb -s /var/tmp/to_scwrl_1535992530.seq -o /var/tmp/from_scwrl_1535992530.pdb > /var/tmp/scwrl_1535992530.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1535992530.pdb
# conformation set from SCWRL output
# naming current conformation GeneSilicoMetaServer_TS1-scwrl
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1211698575.pdb -s /var/tmp/to_scwrl_1211698575.seq -o /var/tmp/from_scwrl_1211698575.pdb > /var/tmp/scwrl_1211698575.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1211698575.pdb
# conformation set from SCWRL output
# naming current conformation GeneSilicoMetaServer_TS2-scwrl
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_599302240.pdb -s /var/tmp/to_scwrl_599302240.seq -o /var/tmp/from_scwrl_599302240.pdb > /var/tmp/scwrl_599302240.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_599302240.pdb
# conformation set from SCWRL output
# naming current conformation GeneSilicoMetaServer_TS3-scwrl
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_117970311.pdb -s /var/tmp/to_scwrl_117970311.seq -o /var/tmp/from_scwrl_117970311.pdb > /var/tmp/scwrl_117970311.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_117970311.pdb
# conformation set from SCWRL output
# naming current conformation GeneSilicoMetaServer_TS4-scwrl
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1216565421.pdb -s /var/tmp/to_scwrl_1216565421.seq -o /var/tmp/from_scwrl_1216565421.pdb > /var/tmp/scwrl_1216565421.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1216565421.pdb
# conformation set from SCWRL output
# naming current conformation GeneSilicoMetaServer_TS5-scwrl
# ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1
# Found a chain break before 332
# copying to AlignedFragments data structure
# naming current conformation HHpred1_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1606058038.pdb -s /var/tmp/to_scwrl_1606058038.seq -o /var/tmp/from_scwrl_1606058038.pdb > /var/tmp/scwrl_1606058038.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1606058038.pdb
# conformation set from SCWRL output
# naming current conformation HHpred1_TS1-scwrl
# ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation HHpred2_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1433789785.pdb -s /var/tmp/to_scwrl_1433789785.seq -o /var/tmp/from_scwrl_1433789785.pdb > /var/tmp/scwrl_1433789785.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1433789785.pdb
# conformation set from SCWRL output
# naming current conformation HHpred2_TS1-scwrl
# ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation HHpred3_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_492168542.pdb -s /var/tmp/to_scwrl_492168542.seq -o /var/tmp/from_scwrl_492168542.pdb > /var/tmp/scwrl_492168542.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_492168542.pdb
# conformation set from SCWRL output
# naming current conformation HHpred3_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_173123156.pdb -s /var/tmp/to_scwrl_173123156.seq -o /var/tmp/from_scwrl_173123156.pdb > /var/tmp/scwrl_173123156.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_173123156.pdb
# conformation set from SCWRL output
# naming current conformation Huber-Torda-Server_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2070978259.pdb -s /var/tmp/to_scwrl_2070978259.seq -o /var/tmp/from_scwrl_2070978259.pdb > /var/tmp/scwrl_2070978259.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2070978259.pdb
# conformation set from SCWRL output
# naming current conformation Huber-Torda-Server_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_686807682.pdb -s /var/tmp/to_scwrl_686807682.seq -o /var/tmp/from_scwrl_686807682.pdb > /var/tmp/scwrl_686807682.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_686807682.pdb
# conformation set from SCWRL output
# naming current conformation Huber-Torda-Server_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1268594586.pdb -s /var/tmp/to_scwrl_1268594586.seq -o /var/tmp/from_scwrl_1268594586.pdb > /var/tmp/scwrl_1268594586.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1268594586.pdb
# conformation set from SCWRL output
# naming current conformation Huber-Torda-Server_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1364981714.pdb -s /var/tmp/to_scwrl_1364981714.seq -o /var/tmp/from_scwrl_1364981714.pdb > /var/tmp/scwrl_1364981714.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1364981714.pdb
# conformation set from SCWRL output
# naming current conformation Huber-Torda-Server_TS5-scwrl
# ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_313815765.pdb -s /var/tmp/to_scwrl_313815765.seq -o /var/tmp/from_scwrl_313815765.pdb > /var/tmp/scwrl_313815765.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_313815765.pdb
# conformation set from SCWRL output
# naming current conformation LOOPP_TS1-scwrl
# ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_29335078.pdb -s /var/tmp/to_scwrl_29335078.seq -o /var/tmp/from_scwrl_29335078.pdb > /var/tmp/scwrl_29335078.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_29335078.pdb
# conformation set from SCWRL output
# naming current conformation LOOPP_TS2-scwrl
# ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_463771105.pdb -s /var/tmp/to_scwrl_463771105.seq -o /var/tmp/from_scwrl_463771105.pdb > /var/tmp/scwrl_463771105.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_463771105.pdb
# conformation set from SCWRL output
# naming current conformation LOOPP_TS3-scwrl
# ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1732159101.pdb -s /var/tmp/to_scwrl_1732159101.seq -o /var/tmp/from_scwrl_1732159101.pdb > /var/tmp/scwrl_1732159101.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1732159101.pdb
# conformation set from SCWRL output
# naming current conformation LOOPP_TS4-scwrl
# ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1730124471.pdb -s /var/tmp/to_scwrl_1730124471.seq -o /var/tmp/from_scwrl_1730124471.pdb > /var/tmp/scwrl_1730124471.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1730124471.pdb
# conformation set from SCWRL output
# naming current conformation LOOPP_TS5-scwrl
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1585300136.pdb -s /var/tmp/to_scwrl_1585300136.seq -o /var/tmp/from_scwrl_1585300136.pdb > /var/tmp/scwrl_1585300136.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1585300136.pdb
# conformation set from SCWRL output
# naming current conformation Ma-OPUS-server_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_98289320.pdb -s /var/tmp/to_scwrl_98289320.seq -o /var/tmp/from_scwrl_98289320.pdb > /var/tmp/scwrl_98289320.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_98289320.pdb
# conformation set from SCWRL output
# naming current conformation Ma-OPUS-server_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_592463300.pdb -s /var/tmp/to_scwrl_592463300.seq -o /var/tmp/from_scwrl_592463300.pdb > /var/tmp/scwrl_592463300.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_592463300.pdb
# conformation set from SCWRL output
# naming current conformation Ma-OPUS-server_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1
# Found a chain break before 326
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_919344504.pdb -s /var/tmp/to_scwrl_919344504.seq -o /var/tmp/from_scwrl_919344504.pdb > /var/tmp/scwrl_919344504.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_919344504.pdb
# conformation set from SCWRL output
# naming current conformation Ma-OPUS-server_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1
# Found a chain break before 331
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_27968067.pdb -s /var/tmp/to_scwrl_27968067.seq -o /var/tmp/from_scwrl_27968067.pdb > /var/tmp/scwrl_27968067.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_27968067.pdb
# conformation set from SCWRL output
# naming current conformation Ma-OPUS-server_TS5-scwrl
# ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1364006310.pdb -s /var/tmp/to_scwrl_1364006310.seq -o /var/tmp/from_scwrl_1364006310.pdb > /var/tmp/scwrl_1364006310.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1364006310.pdb
# conformation set from SCWRL output
# naming current conformation MetaTasser_TS1-scwrl
# ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1
# Found a chain break before 321
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1541532772.pdb -s /var/tmp/to_scwrl_1541532772.seq -o /var/tmp/from_scwrl_1541532772.pdb > /var/tmp/scwrl_1541532772.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1541532772.pdb
# conformation set from SCWRL output
# naming current conformation MetaTasser_TS2-scwrl
# ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1941231725.pdb -s /var/tmp/to_scwrl_1941231725.seq -o /var/tmp/from_scwrl_1941231725.pdb > /var/tmp/scwrl_1941231725.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1941231725.pdb
# conformation set from SCWRL output
# naming current conformation MetaTasser_TS3-scwrl
# ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1650034726.pdb -s /var/tmp/to_scwrl_1650034726.seq -o /var/tmp/from_scwrl_1650034726.pdb > /var/tmp/scwrl_1650034726.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1650034726.pdb
# conformation set from SCWRL output
# naming current conformation MetaTasser_TS4-scwrl
# ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1
# Found a chain break before 332
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_779068223.pdb -s /var/tmp/to_scwrl_779068223.seq -o /var/tmp/from_scwrl_779068223.pdb > /var/tmp/scwrl_779068223.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_779068223.pdb
# conformation set from SCWRL output
# naming current conformation MetaTasser_TS5-scwrl
# ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation NN_PUT_lab_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1544768128.pdb -s /var/tmp/to_scwrl_1544768128.seq -o /var/tmp/from_scwrl_1544768128.pdb > /var/tmp/scwrl_1544768128.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1544768128.pdb
# conformation set from SCWRL output
# naming current conformation NN_PUT_lab_TS1-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_266613524.pdb -s /var/tmp/to_scwrl_266613524.seq -o /var/tmp/from_scwrl_266613524.pdb > /var/tmp/scwrl_266613524.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_266613524.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO-AB_TS1-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_331690363.pdb -s /var/tmp/to_scwrl_331690363.seq -o /var/tmp/from_scwrl_331690363.pdb > /var/tmp/scwrl_331690363.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_331690363.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO-AB_TS2-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_933277012.pdb -s /var/tmp/to_scwrl_933277012.seq -o /var/tmp/from_scwrl_933277012.pdb > /var/tmp/scwrl_933277012.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_933277012.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO-AB_TS3-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1478312099.pdb -s /var/tmp/to_scwrl_1478312099.seq -o /var/tmp/from_scwrl_1478312099.pdb > /var/tmp/scwrl_1478312099.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1478312099.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO-AB_TS4-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_930992604.pdb -s /var/tmp/to_scwrl_930992604.seq -o /var/tmp/from_scwrl_930992604.pdb > /var/tmp/scwrl_930992604.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_930992604.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO-AB_TS5-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1051247323.pdb -s /var/tmp/to_scwrl_1051247323.seq -o /var/tmp/from_scwrl_1051247323.pdb > /var/tmp/scwrl_1051247323.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1051247323.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO_TS1-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_547393874.pdb -s /var/tmp/to_scwrl_547393874.seq -o /var/tmp/from_scwrl_547393874.pdb > /var/tmp/scwrl_547393874.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_547393874.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO_TS2-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1
# Found a chain break before 317
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_389566995.pdb -s /var/tmp/to_scwrl_389566995.seq -o /var/tmp/from_scwrl_389566995.pdb > /var/tmp/scwrl_389566995.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_389566995.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO_TS3-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_337553461.pdb -s /var/tmp/to_scwrl_337553461.seq -o /var/tmp/from_scwrl_337553461.pdb > /var/tmp/scwrl_337553461.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_337553461.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO_TS4-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1039562417.pdb -s /var/tmp/to_scwrl_1039562417.seq -o /var/tmp/from_scwrl_1039562417.pdb > /var/tmp/scwrl_1039562417.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1039562417.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO_TS5-scwrl
# ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_562690152.pdb -s /var/tmp/to_scwrl_562690152.seq -o /var/tmp/from_scwrl_562690152.pdb > /var/tmp/scwrl_562690152.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_562690152.pdb
# conformation set from SCWRL output
# naming current conformation Pcons6_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_261048073.pdb -s /var/tmp/to_scwrl_261048073.seq -o /var/tmp/from_scwrl_261048073.pdb > /var/tmp/scwrl_261048073.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_261048073.pdb
# conformation set from SCWRL output
# naming current conformation Pcons6_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1726370098.pdb -s /var/tmp/to_scwrl_1726370098.seq -o /var/tmp/from_scwrl_1726370098.pdb > /var/tmp/scwrl_1726370098.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1726370098.pdb
# conformation set from SCWRL output
# naming current conformation Pcons6_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1831284738.pdb -s /var/tmp/to_scwrl_1831284738.seq -o /var/tmp/from_scwrl_1831284738.pdb > /var/tmp/scwrl_1831284738.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1831284738.pdb
# conformation set from SCWRL output
# naming current conformation Pcons6_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1626029788.pdb -s /var/tmp/to_scwrl_1626029788.seq -o /var/tmp/from_scwrl_1626029788.pdb > /var/tmp/scwrl_1626029788.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1626029788.pdb
# conformation set from SCWRL output
# naming current conformation Pcons6_TS5-scwrl
# ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Phyre-1_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2040185864.pdb -s /var/tmp/to_scwrl_2040185864.seq -o /var/tmp/from_scwrl_2040185864.pdb > /var/tmp/scwrl_2040185864.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2040185864.pdb
# conformation set from SCWRL output
# naming current conformation Phyre-1_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1860619816.pdb -s /var/tmp/to_scwrl_1860619816.seq -o /var/tmp/from_scwrl_1860619816.pdb > /var/tmp/scwrl_1860619816.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1860619816.pdb
# conformation set from SCWRL output
# naming current conformation Phyre-2_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2089800893.pdb -s /var/tmp/to_scwrl_2089800893.seq -o /var/tmp/from_scwrl_2089800893.pdb > /var/tmp/scwrl_2089800893.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2089800893.pdb
# conformation set from SCWRL output
# naming current conformation Phyre-2_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1624861318.pdb -s /var/tmp/to_scwrl_1624861318.seq -o /var/tmp/from_scwrl_1624861318.pdb > /var/tmp/scwrl_1624861318.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1624861318.pdb
# conformation set from SCWRL output
# naming current conformation Phyre-2_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1443260640.pdb -s /var/tmp/to_scwrl_1443260640.seq -o /var/tmp/from_scwrl_1443260640.pdb > /var/tmp/scwrl_1443260640.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1443260640.pdb
# conformation set from SCWRL output
# naming current conformation Phyre-2_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1527617382.pdb -s /var/tmp/to_scwrl_1527617382.seq -o /var/tmp/from_scwrl_1527617382.pdb > /var/tmp/scwrl_1527617382.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1527617382.pdb
# conformation set from SCWRL output
# naming current conformation Phyre-2_TS5-scwrl
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1723150639.pdb -s /var/tmp/to_scwrl_1723150639.seq -o /var/tmp/from_scwrl_1723150639.pdb > /var/tmp/scwrl_1723150639.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1723150639.pdb
# conformation set from SCWRL output
# naming current conformation Pmodeller6_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2035723940.pdb -s /var/tmp/to_scwrl_2035723940.seq -o /var/tmp/from_scwrl_2035723940.pdb > /var/tmp/scwrl_2035723940.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2035723940.pdb
# conformation set from SCWRL output
# naming current conformation Pmodeller6_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_299478239.pdb -s /var/tmp/to_scwrl_299478239.seq -o /var/tmp/from_scwrl_299478239.pdb > /var/tmp/scwrl_299478239.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_299478239.pdb
# conformation set from SCWRL output
# naming current conformation Pmodeller6_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1751118706.pdb -s /var/tmp/to_scwrl_1751118706.seq -o /var/tmp/from_scwrl_1751118706.pdb > /var/tmp/scwrl_1751118706.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1751118706.pdb
# conformation set from SCWRL output
# naming current conformation Pmodeller6_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1252246604.pdb -s /var/tmp/to_scwrl_1252246604.seq -o /var/tmp/from_scwrl_1252246604.pdb > /var/tmp/scwrl_1252246604.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1252246604.pdb
# conformation set from SCWRL output
# naming current conformation Pmodeller6_TS5-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1841011012.pdb -s /var/tmp/to_scwrl_1841011012.seq -o /var/tmp/from_scwrl_1841011012.pdb > /var/tmp/scwrl_1841011012.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1841011012.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR-ACE_TS1-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1544866784.pdb -s /var/tmp/to_scwrl_1544866784.seq -o /var/tmp/from_scwrl_1544866784.pdb > /var/tmp/scwrl_1544866784.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1544866784.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR-ACE_TS2-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_754797684.pdb -s /var/tmp/to_scwrl_754797684.seq -o /var/tmp/from_scwrl_754797684.pdb > /var/tmp/scwrl_754797684.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_754797684.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR-ACE_TS3-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_472595588.pdb -s /var/tmp/to_scwrl_472595588.seq -o /var/tmp/from_scwrl_472595588.pdb > /var/tmp/scwrl_472595588.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_472595588.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR-ACE_TS4-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_942151266.pdb -s /var/tmp/to_scwrl_942151266.seq -o /var/tmp/from_scwrl_942151266.pdb > /var/tmp/scwrl_942151266.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_942151266.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR-ACE_TS5-scwrl
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1
# Found a chain break before 317
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1021411208.pdb -s /var/tmp/to_scwrl_1021411208.seq -o /var/tmp/from_scwrl_1021411208.pdb > /var/tmp/scwrl_1021411208.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1021411208.pdb
# conformation set from SCWRL output
# naming current conformation RAPTORESS_TS1-scwrl
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1
# Found a chain break before 312
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_804285952.pdb -s /var/tmp/to_scwrl_804285952.seq -o /var/tmp/from_scwrl_804285952.pdb > /var/tmp/scwrl_804285952.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_804285952.pdb
# conformation set from SCWRL output
# naming current conformation RAPTORESS_TS2-scwrl
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1
# Found a chain break before 310
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1875428278.pdb -s /var/tmp/to_scwrl_1875428278.seq -o /var/tmp/from_scwrl_1875428278.pdb > /var/tmp/scwrl_1875428278.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1875428278.pdb
# conformation set from SCWRL output
# naming current conformation RAPTORESS_TS3-scwrl
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1
# Found a chain break before 327
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_352239661.pdb -s /var/tmp/to_scwrl_352239661.seq -o /var/tmp/from_scwrl_352239661.pdb > /var/tmp/scwrl_352239661.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_352239661.pdb
# conformation set from SCWRL output
# naming current conformation RAPTORESS_TS4-scwrl
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1
# Found a chain break before 331
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1735278555.pdb -s /var/tmp/to_scwrl_1735278555.seq -o /var/tmp/from_scwrl_1735278555.pdb > /var/tmp/scwrl_1735278555.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1735278555.pdb
# conformation set from SCWRL output
# naming current conformation RAPTORESS_TS5-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1
# Found a chain break before 326
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_779191954.pdb -s /var/tmp/to_scwrl_779191954.seq -o /var/tmp/from_scwrl_779191954.pdb > /var/tmp/scwrl_779191954.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_779191954.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR_TS1-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_899633535.pdb -s /var/tmp/to_scwrl_899633535.seq -o /var/tmp/from_scwrl_899633535.pdb > /var/tmp/scwrl_899633535.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_899633535.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR_TS2-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2124845550.pdb -s /var/tmp/to_scwrl_2124845550.seq -o /var/tmp/from_scwrl_2124845550.pdb > /var/tmp/scwrl_2124845550.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2124845550.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR_TS3-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1116745415.pdb -s /var/tmp/to_scwrl_1116745415.seq -o /var/tmp/from_scwrl_1116745415.pdb > /var/tmp/scwrl_1116745415.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1116745415.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR_TS4-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1939195951.pdb -s /var/tmp/to_scwrl_1939195951.seq -o /var/tmp/from_scwrl_1939195951.pdb > /var/tmp/scwrl_1939195951.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1939195951.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR_TS5-scwrl
# ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1
# Found a chain break before 318
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_540052055.pdb -s /var/tmp/to_scwrl_540052055.seq -o /var/tmp/from_scwrl_540052055.pdb > /var/tmp/scwrl_540052055.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_540052055.pdb
# conformation set from SCWRL output
# naming current conformation ROBETTA_TS1-scwrl
# ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1377793488.pdb -s /var/tmp/to_scwrl_1377793488.seq -o /var/tmp/from_scwrl_1377793488.pdb > /var/tmp/scwrl_1377793488.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1377793488.pdb
# conformation set from SCWRL output
# naming current conformation ROBETTA_TS2-scwrl
# ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1
# Found a chain break before 317
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1518082403.pdb -s /var/tmp/to_scwrl_1518082403.seq -o /var/tmp/from_scwrl_1518082403.pdb > /var/tmp/scwrl_1518082403.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1518082403.pdb
# conformation set from SCWRL output
# naming current conformation ROBETTA_TS3-scwrl
# ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1
# Found a chain break before 315
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_223853146.pdb -s /var/tmp/to_scwrl_223853146.seq -o /var/tmp/from_scwrl_223853146.pdb > /var/tmp/scwrl_223853146.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_223853146.pdb
# conformation set from SCWRL output
# naming current conformation ROBETTA_TS4-scwrl
# ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_856339630.pdb -s /var/tmp/to_scwrl_856339630.seq -o /var/tmp/from_scwrl_856339630.pdb > /var/tmp/scwrl_856339630.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_856339630.pdb
# conformation set from SCWRL output
# naming current conformation ROBETTA_TS5-scwrl
# ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1410784620.pdb -s /var/tmp/to_scwrl_1410784620.seq -o /var/tmp/from_scwrl_1410784620.pdb > /var/tmp/scwrl_1410784620.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1410784620.pdb
# conformation set from SCWRL output
# naming current conformation ROKKY_TS1-scwrl
# ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2084472962.pdb -s /var/tmp/to_scwrl_2084472962.seq -o /var/tmp/from_scwrl_2084472962.pdb > /var/tmp/scwrl_2084472962.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2084472962.pdb
# conformation set from SCWRL output
# naming current conformation ROKKY_TS2-scwrl
# ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_798656876.pdb -s /var/tmp/to_scwrl_798656876.seq -o /var/tmp/from_scwrl_798656876.pdb > /var/tmp/scwrl_798656876.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_798656876.pdb
# conformation set from SCWRL output
# naming current conformation ROKKY_TS3-scwrl
# ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_888162292.pdb -s /var/tmp/to_scwrl_888162292.seq -o /var/tmp/from_scwrl_888162292.pdb > /var/tmp/scwrl_888162292.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_888162292.pdb
# conformation set from SCWRL output
# naming current conformation ROKKY_TS4-scwrl
# ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1380249956.pdb -s /var/tmp/to_scwrl_1380249956.seq -o /var/tmp/from_scwrl_1380249956.pdb > /var/tmp/scwrl_1380249956.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1380249956.pdb
# conformation set from SCWRL output
# naming current conformation ROKKY_TS5-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_178790612.pdb -s /var/tmp/to_scwrl_178790612.seq -o /var/tmp/from_scwrl_178790612.pdb > /var/tmp/scwrl_178790612.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_178790612.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T02_AL1-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_463829284.pdb -s /var/tmp/to_scwrl_463829284.seq -o /var/tmp/from_scwrl_463829284.pdb > /var/tmp/scwrl_463829284.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_463829284.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T02_AL2-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1268490249.pdb -s /var/tmp/to_scwrl_1268490249.seq -o /var/tmp/from_scwrl_1268490249.pdb > /var/tmp/scwrl_1268490249.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1268490249.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T02_AL3-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_478268851.pdb -s /var/tmp/to_scwrl_478268851.seq -o /var/tmp/from_scwrl_478268851.pdb > /var/tmp/scwrl_478268851.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_478268851.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T02_AL4-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_67464344.pdb -s /var/tmp/to_scwrl_67464344.seq -o /var/tmp/from_scwrl_67464344.pdb > /var/tmp/scwrl_67464344.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_67464344.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T02_AL5-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_373253207.pdb -s /var/tmp/to_scwrl_373253207.seq -o /var/tmp/from_scwrl_373253207.pdb > /var/tmp/scwrl_373253207.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_373253207.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T99_AL1-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_171796216.pdb -s /var/tmp/to_scwrl_171796216.seq -o /var/tmp/from_scwrl_171796216.pdb > /var/tmp/scwrl_171796216.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_171796216.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T99_AL2-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1612331128.pdb -s /var/tmp/to_scwrl_1612331128.seq -o /var/tmp/from_scwrl_1612331128.pdb > /var/tmp/scwrl_1612331128.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1612331128.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T99_AL3-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1128050891.pdb -s /var/tmp/to_scwrl_1128050891.seq -o /var/tmp/from_scwrl_1128050891.pdb > /var/tmp/scwrl_1128050891.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1128050891.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T99_AL4-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_644391805.pdb -s /var/tmp/to_scwrl_644391805.seq -o /var/tmp/from_scwrl_644391805.pdb > /var/tmp/scwrl_644391805.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_644391805.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T99_AL5-scwrl
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SAM_T06_server_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_406998748.pdb -s /var/tmp/to_scwrl_406998748.seq -o /var/tmp/from_scwrl_406998748.pdb > /var/tmp/scwrl_406998748.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_406998748.pdb
# conformation set from SCWRL output
# naming current conformation SAM_T06_server_TS1-scwrl
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1978452.pdb -s /var/tmp/to_scwrl_1978452.seq -o /var/tmp/from_scwrl_1978452.pdb > /var/tmp/scwrl_1978452.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1978452.pdb
# conformation set from SCWRL output
# naming current conformation SAM_T06_server_TS2-scwrl
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1448677756.pdb -s /var/tmp/to_scwrl_1448677756.seq -o /var/tmp/from_scwrl_1448677756.pdb > /var/tmp/scwrl_1448677756.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1448677756.pdb
# conformation set from SCWRL output
# naming current conformation SAM_T06_server_TS3-scwrl
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_134943379.pdb -s /var/tmp/to_scwrl_134943379.seq -o /var/tmp/from_scwrl_134943379.pdb > /var/tmp/scwrl_134943379.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_134943379.pdb
# conformation set from SCWRL output
# naming current conformation SAM_T06_server_TS4-scwrl
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_354218113.pdb -s /var/tmp/to_scwrl_354218113.seq -o /var/tmp/from_scwrl_354218113.pdb > /var/tmp/scwrl_354218113.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_354218113.pdb
# conformation set from SCWRL output
# naming current conformation SAM_T06_server_TS5-scwrl
# ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SP3_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1036472665.pdb -s /var/tmp/to_scwrl_1036472665.seq -o /var/tmp/from_scwrl_1036472665.pdb > /var/tmp/scwrl_1036472665.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1036472665.pdb
# conformation set from SCWRL output
# naming current conformation SP3_TS1-scwrl
# ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SP3_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_914135333.pdb -s /var/tmp/to_scwrl_914135333.seq -o /var/tmp/from_scwrl_914135333.pdb > /var/tmp/scwrl_914135333.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_914135333.pdb
# conformation set from SCWRL output
# naming current conformation SP3_TS2-scwrl
# ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SP3_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1253851648.pdb -s /var/tmp/to_scwrl_1253851648.seq -o /var/tmp/from_scwrl_1253851648.pdb > /var/tmp/scwrl_1253851648.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1253851648.pdb
# conformation set from SCWRL output
# naming current conformation SP3_TS3-scwrl
# ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SP3_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1013834568.pdb -s /var/tmp/to_scwrl_1013834568.seq -o /var/tmp/from_scwrl_1013834568.pdb > /var/tmp/scwrl_1013834568.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1013834568.pdb
# conformation set from SCWRL output
# naming current conformation SP3_TS4-scwrl
# ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1
# Found a chain break before 328
# copying to AlignedFragments data structure
# naming current conformation SP3_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2030880748.pdb -s /var/tmp/to_scwrl_2030880748.seq -o /var/tmp/from_scwrl_2030880748.pdb > /var/tmp/scwrl_2030880748.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2030880748.pdb
# conformation set from SCWRL output
# naming current conformation SP3_TS5-scwrl
# ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SP4_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1045563953.pdb -s /var/tmp/to_scwrl_1045563953.seq -o /var/tmp/from_scwrl_1045563953.pdb > /var/tmp/scwrl_1045563953.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1045563953.pdb
# conformation set from SCWRL output
# naming current conformation SP4_TS1-scwrl
# ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SP4_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1553886623.pdb -s /var/tmp/to_scwrl_1553886623.seq -o /var/tmp/from_scwrl_1553886623.pdb > /var/tmp/scwrl_1553886623.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1553886623.pdb
# conformation set from SCWRL output
# naming current conformation SP4_TS2-scwrl
# ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation SP4_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1261190590.pdb -s /var/tmp/to_scwrl_1261190590.seq -o /var/tmp/from_scwrl_1261190590.pdb > /var/tmp/scwrl_1261190590.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1261190590.pdb
# conformation set from SCWRL output
# naming current conformation SP4_TS3-scwrl
# ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation SP4_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_416162709.pdb -s /var/tmp/to_scwrl_416162709.seq -o /var/tmp/from_scwrl_416162709.pdb > /var/tmp/scwrl_416162709.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_416162709.pdb
# conformation set from SCWRL output
# naming current conformation SP4_TS4-scwrl
# ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1
# Found a chain break before 327
# copying to AlignedFragments data structure
# naming current conformation SP4_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1777739769.pdb -s /var/tmp/to_scwrl_1777739769.seq -o /var/tmp/from_scwrl_1777739769.pdb > /var/tmp/scwrl_1777739769.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1777739769.pdb
# conformation set from SCWRL output
# naming current conformation SP4_TS5-scwrl
# ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2117530220.pdb -s /var/tmp/to_scwrl_2117530220.seq -o /var/tmp/from_scwrl_2117530220.pdb > /var/tmp/scwrl_2117530220.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2117530220.pdb
# conformation set from SCWRL output
# naming current conformation SPARKS2_TS1-scwrl
# ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1
# Found a chain break before 326
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1826947329.pdb -s /var/tmp/to_scwrl_1826947329.seq -o /var/tmp/from_scwrl_1826947329.pdb > /var/tmp/scwrl_1826947329.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1826947329.pdb
# conformation set from SCWRL output
# naming current conformation SPARKS2_TS2-scwrl
# ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1714729085.pdb -s /var/tmp/to_scwrl_1714729085.seq -o /var/tmp/from_scwrl_1714729085.pdb > /var/tmp/scwrl_1714729085.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1714729085.pdb
# conformation set from SCWRL output
# naming current conformation SPARKS2_TS3-scwrl
# ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_768703450.pdb -s /var/tmp/to_scwrl_768703450.seq -o /var/tmp/from_scwrl_768703450.pdb > /var/tmp/scwrl_768703450.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_768703450.pdb
# conformation set from SCWRL output
# naming current conformation SPARKS2_TS4-scwrl
# ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1
# Found a chain break before 330
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_567625975.pdb -s /var/tmp/to_scwrl_567625975.seq -o /var/tmp/from_scwrl_567625975.pdb > /var/tmp/scwrl_567625975.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_567625975.pdb
# conformation set from SCWRL output
# naming current conformation SPARKS2_TS5-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_947495395.pdb -s /var/tmp/to_scwrl_947495395.seq -o /var/tmp/from_scwrl_947495395.pdb > /var/tmp/scwrl_947495395.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_947495395.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_bnmx_TS1-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_947494062.pdb -s /var/tmp/to_scwrl_947494062.seq -o /var/tmp/from_scwrl_947494062.pdb > /var/tmp/scwrl_947494062.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_947494062.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_bnmx_TS2-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1031455259.pdb -s /var/tmp/to_scwrl_1031455259.seq -o /var/tmp/from_scwrl_1031455259.pdb > /var/tmp/scwrl_1031455259.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1031455259.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_bnmx_TS3-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_68501997.pdb -s /var/tmp/to_scwrl_68501997.seq -o /var/tmp/from_scwrl_68501997.pdb > /var/tmp/scwrl_68501997.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_68501997.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_bnmx_TS4-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1425762912.pdb -s /var/tmp/to_scwrl_1425762912.seq -o /var/tmp/from_scwrl_1425762912.pdb > /var/tmp/scwrl_1425762912.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1425762912.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_bnmx_TS5-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_expm_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1098919602.pdb -s /var/tmp/to_scwrl_1098919602.seq -o /var/tmp/from_scwrl_1098919602.pdb > /var/tmp/scwrl_1098919602.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1098919602.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_expm_TS1-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_441755205.pdb -s /var/tmp/to_scwrl_441755205.seq -o /var/tmp/from_scwrl_441755205.pdb > /var/tmp/scwrl_441755205.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_441755205.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_sfst_AL1-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1597559129.pdb -s /var/tmp/to_scwrl_1597559129.seq -o /var/tmp/from_scwrl_1597559129.pdb > /var/tmp/scwrl_1597559129.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1597559129.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_sfst_AL2-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_563767085.pdb -s /var/tmp/to_scwrl_563767085.seq -o /var/tmp/from_scwrl_563767085.pdb > /var/tmp/scwrl_563767085.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_563767085.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_sfst_AL3-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1569806096.pdb -s /var/tmp/to_scwrl_1569806096.seq -o /var/tmp/from_scwrl_1569806096.pdb > /var/tmp/scwrl_1569806096.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1569806096.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_sfst_AL4-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_94467287.pdb -s /var/tmp/to_scwrl_94467287.seq -o /var/tmp/from_scwrl_94467287.pdb > /var/tmp/scwrl_94467287.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_94467287.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_sfst_AL5-scwrl
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_970765833.pdb -s /var/tmp/to_scwrl_970765833.seq -o /var/tmp/from_scwrl_970765833.pdb > /var/tmp/scwrl_970765833.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_970765833.pdb
# conformation set from SCWRL output
# naming current conformation Zhang-Server_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1571784548.pdb -s /var/tmp/to_scwrl_1571784548.seq -o /var/tmp/from_scwrl_1571784548.pdb > /var/tmp/scwrl_1571784548.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1571784548.pdb
# conformation set from SCWRL output
# naming current conformation Zhang-Server_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1543145043.pdb -s /var/tmp/to_scwrl_1543145043.seq -o /var/tmp/from_scwrl_1543145043.pdb > /var/tmp/scwrl_1543145043.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543145043.pdb
# conformation set from SCWRL output
# naming current conformation Zhang-Server_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1105709211.pdb -s /var/tmp/to_scwrl_1105709211.seq -o /var/tmp/from_scwrl_1105709211.pdb > /var/tmp/scwrl_1105709211.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1105709211.pdb
# conformation set from SCWRL output
# naming current conformation Zhang-Server_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1926002662.pdb -s /var/tmp/to_scwrl_1926002662.seq -o /var/tmp/from_scwrl_1926002662.pdb > /var/tmp/scwrl_1926002662.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1926002662.pdb
# conformation set from SCWRL output
# naming current conformation Zhang-Server_TS5-scwrl
# ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation beautshot_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_432134061.pdb -s /var/tmp/to_scwrl_432134061.seq -o /var/tmp/from_scwrl_432134061.pdb > /var/tmp/scwrl_432134061.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_432134061.pdb
# conformation set from SCWRL output
# naming current conformation beautshot_TS1-scwrl
# ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation beautshotbase_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2019844544.pdb -s /var/tmp/to_scwrl_2019844544.seq -o /var/tmp/from_scwrl_2019844544.pdb > /var/tmp/scwrl_2019844544.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2019844544.pdb
# conformation set from SCWRL output
# naming current conformation beautshotbase_TS1-scwrl
# ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1032370664.pdb -s /var/tmp/to_scwrl_1032370664.seq -o /var/tmp/from_scwrl_1032370664.pdb > /var/tmp/scwrl_1032370664.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1032370664.pdb
# conformation set from SCWRL output
# naming current conformation forecast-s_AL1-scwrl
# ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1
Skipped atom 553, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz
Skipped atom 554, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz
Skipped atom 555, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz
Skipped atom 556, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1445968628.pdb -s /var/tmp/to_scwrl_1445968628.seq -o /var/tmp/from_scwrl_1445968628.pdb > /var/tmp/scwrl_1445968628.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1445968628.pdb
# conformation set from SCWRL output
# naming current conformation forecast-s_AL2-scwrl
# ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1903241646.pdb -s /var/tmp/to_scwrl_1903241646.seq -o /var/tmp/from_scwrl_1903241646.pdb > /var/tmp/scwrl_1903241646.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1903241646.pdb
# conformation set from SCWRL output
# naming current conformation forecast-s_AL3-scwrl
# ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2077934616.pdb -s /var/tmp/to_scwrl_2077934616.seq -o /var/tmp/from_scwrl_2077934616.pdb > /var/tmp/scwrl_2077934616.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2077934616.pdb
# conformation set from SCWRL output
# naming current conformation forecast-s_AL4-scwrl
# ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_852371605.pdb -s /var/tmp/to_scwrl_852371605.seq -o /var/tmp/from_scwrl_852371605.pdb > /var/tmp/scwrl_852371605.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_852371605.pdb
# conformation set from SCWRL output
# naming current conformation forecast-s_AL5-scwrl
# ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation gtg_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1016948590.pdb -s /var/tmp/to_scwrl_1016948590.seq -o /var/tmp/from_scwrl_1016948590.pdb > /var/tmp/scwrl_1016948590.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1016948590.pdb
# conformation set from SCWRL output
# naming current conformation gtg_AL1-scwrl
# ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation gtg_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_346613679.pdb -s /var/tmp/to_scwrl_346613679.seq -o /var/tmp/from_scwrl_346613679.pdb > /var/tmp/scwrl_346613679.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_346613679.pdb
# conformation set from SCWRL output
# naming current conformation gtg_AL2-scwrl
# ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation gtg_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_482627728.pdb -s /var/tmp/to_scwrl_482627728.seq -o /var/tmp/from_scwrl_482627728.pdb > /var/tmp/scwrl_482627728.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_482627728.pdb
# conformation set from SCWRL output
# naming current conformation gtg_AL3-scwrl
# ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation gtg_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_986995163.pdb -s /var/tmp/to_scwrl_986995163.seq -o /var/tmp/from_scwrl_986995163.pdb > /var/tmp/scwrl_986995163.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_986995163.pdb
# conformation set from SCWRL output
# naming current conformation gtg_AL4-scwrl
# ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1
Skipped atom 118, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 120, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 134, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 136, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 138, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 140, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation gtg_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_26077361.pdb -s /var/tmp/to_scwrl_26077361.seq -o /var/tmp/from_scwrl_26077361.pdb > /var/tmp/scwrl_26077361.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_26077361.pdb
# conformation set from SCWRL output
# naming current conformation gtg_AL5-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv.2_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_49873166.pdb -s /var/tmp/to_scwrl_49873166.seq -o /var/tmp/from_scwrl_49873166.pdb > /var/tmp/scwrl_49873166.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_49873166.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.2_TS1-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv.2_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1755698612.pdb -s /var/tmp/to_scwrl_1755698612.seq -o /var/tmp/from_scwrl_1755698612.pdb > /var/tmp/scwrl_1755698612.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1755698612.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.2_TS2-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv.2_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_593703336.pdb -s /var/tmp/to_scwrl_593703336.seq -o /var/tmp/from_scwrl_593703336.pdb > /var/tmp/scwrl_593703336.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_593703336.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.2_TS3-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv.2_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_997368561.pdb -s /var/tmp/to_scwrl_997368561.seq -o /var/tmp/from_scwrl_997368561.pdb > /var/tmp/scwrl_997368561.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_997368561.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.2_TS4-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv.2_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_555709027.pdb -s /var/tmp/to_scwrl_555709027.seq -o /var/tmp/from_scwrl_555709027.pdb > /var/tmp/scwrl_555709027.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_555709027.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.2_TS5-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1625158595.pdb -s /var/tmp/to_scwrl_1625158595.seq -o /var/tmp/from_scwrl_1625158595.pdb > /var/tmp/scwrl_1625158595.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1625158595.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.4_TS2-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1065870558.pdb -s /var/tmp/to_scwrl_1065870558.seq -o /var/tmp/from_scwrl_1065870558.pdb > /var/tmp/scwrl_1065870558.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1065870558.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.4_TS3-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1
WARNING: atoms too close: (T0298)L198.O and (T0298)A199.N only 0.000 apart, marking (T0298)A199.N as missing
WARNING: atoms too close: (T0298)L327.O and (T0298)G328.N only 0.000 apart, marking (T0298)G328.N as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1981471940.pdb -s /var/tmp/to_scwrl_1981471940.seq -o /var/tmp/from_scwrl_1981471940.pdb > /var/tmp/scwrl_1981471940.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1981471940.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.4_TS4-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1
WARNING: atoms too close: (T0298)H32.O and (T0298)R33.N only 0.000 apart, marking (T0298)R33.N as missing
WARNING: atoms too close: (T0298)D63.O and (T0298)F64.N only 0.000 apart, marking (T0298)F64.N as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_576594551.pdb -s /var/tmp/to_scwrl_576594551.seq -o /var/tmp/from_scwrl_576594551.pdb > /var/tmp/scwrl_576594551.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_576594551.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.4_TS5-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1507625762.pdb -s /var/tmp/to_scwrl_1507625762.seq -o /var/tmp/from_scwrl_1507625762.pdb > /var/tmp/scwrl_1507625762.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1507625762.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv_TS1-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1431547422.pdb -s /var/tmp/to_scwrl_1431547422.seq -o /var/tmp/from_scwrl_1431547422.pdb > /var/tmp/scwrl_1431547422.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1431547422.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv_TS2-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1140361635.pdb -s /var/tmp/to_scwrl_1140361635.seq -o /var/tmp/from_scwrl_1140361635.pdb > /var/tmp/scwrl_1140361635.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1140361635.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv_TS3-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_929948212.pdb -s /var/tmp/to_scwrl_929948212.seq -o /var/tmp/from_scwrl_929948212.pdb > /var/tmp/scwrl_929948212.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_929948212.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv_TS4-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1526014709.pdb -s /var/tmp/to_scwrl_1526014709.seq -o /var/tmp/from_scwrl_1526014709.pdb > /var/tmp/scwrl_1526014709.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1526014709.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv_TS5-scwrl
# ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1
# Found a chain break before 312
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2111127468.pdb -s /var/tmp/to_scwrl_2111127468.seq -o /var/tmp/from_scwrl_2111127468.pdb > /var/tmp/scwrl_2111127468.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2111127468.pdb
# conformation set from SCWRL output
# naming current conformation keasar-server_TS1-scwrl
# ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1
# Found a chain break before 247
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_354249114.pdb -s /var/tmp/to_scwrl_354249114.seq -o /var/tmp/from_scwrl_354249114.pdb > /var/tmp/scwrl_354249114.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_354249114.pdb
# conformation set from SCWRL output
# naming current conformation keasar-server_TS2-scwrl
# ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1
# Found a chain break before 311
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_921676106.pdb -s /var/tmp/to_scwrl_921676106.seq -o /var/tmp/from_scwrl_921676106.pdb > /var/tmp/scwrl_921676106.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_921676106.pdb
# conformation set from SCWRL output
# naming current conformation keasar-server_TS3-scwrl
# ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1
# Found a chain break before 313
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1069353033.pdb -s /var/tmp/to_scwrl_1069353033.seq -o /var/tmp/from_scwrl_1069353033.pdb > /var/tmp/scwrl_1069353033.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1069353033.pdb
# conformation set from SCWRL output
# naming current conformation keasar-server_TS4-scwrl
# ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1
# Found a chain break before 312
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_132768129.pdb -s /var/tmp/to_scwrl_132768129.seq -o /var/tmp/from_scwrl_132768129.pdb > /var/tmp/scwrl_132768129.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_132768129.pdb
# conformation set from SCWRL output
# naming current conformation keasar-server_TS5-scwrl
# ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation mGen-3D_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1353810166.pdb -s /var/tmp/to_scwrl_1353810166.seq -o /var/tmp/from_scwrl_1353810166.pdb > /var/tmp/scwrl_1353810166.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1353810166.pdb
# conformation set from SCWRL output
# naming current conformation mGen-3D_TS1-scwrl
# ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_941713931.pdb -s /var/tmp/to_scwrl_941713931.seq -o /var/tmp/from_scwrl_941713931.pdb > /var/tmp/scwrl_941713931.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_941713931.pdb
# conformation set from SCWRL output
# naming current conformation nFOLD_TS1-scwrl
# ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1165138792.pdb -s /var/tmp/to_scwrl_1165138792.seq -o /var/tmp/from_scwrl_1165138792.pdb > /var/tmp/scwrl_1165138792.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1165138792.pdb
# conformation set from SCWRL output
# naming current conformation nFOLD_TS2-scwrl
# ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_652295148.pdb -s /var/tmp/to_scwrl_652295148.seq -o /var/tmp/from_scwrl_652295148.pdb > /var/tmp/scwrl_652295148.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_652295148.pdb
# conformation set from SCWRL output
# naming current conformation nFOLD_TS3-scwrl
# ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_697471930.pdb -s /var/tmp/to_scwrl_697471930.seq -o /var/tmp/from_scwrl_697471930.pdb > /var/tmp/scwrl_697471930.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_697471930.pdb
# conformation set from SCWRL output
# naming current conformation nFOLD_TS4-scwrl
# ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1095589761.pdb -s /var/tmp/to_scwrl_1095589761.seq -o /var/tmp/from_scwrl_1095589761.pdb > /var/tmp/scwrl_1095589761.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1095589761.pdb
# conformation set from SCWRL output
# naming current conformation nFOLD_TS5-scwrl
# ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation panther2_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1504666753.pdb -s /var/tmp/to_scwrl_1504666753.seq -o /var/tmp/from_scwrl_1504666753.pdb > /var/tmp/scwrl_1504666753.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1504666753.pdb
# conformation set from SCWRL output
# naming current conformation panther2_TS1-scwrl
# ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation shub_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1714420519.pdb -s /var/tmp/to_scwrl_1714420519.seq -o /var/tmp/from_scwrl_1714420519.pdb > /var/tmp/scwrl_1714420519.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1714420519.pdb
# conformation set from SCWRL output
# naming current conformation shub_TS1-scwrl
# command:CPU_time= 66.2939 sec, elapsed time= 433.898 sec)
# command:# Prefix for output files set to decoys/
# command:# Will now start reporting costs to decoys/evaluate_2.rdb
# command:# CostConform
Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input
Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot
# Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot
shub_TS1-scwrl	costs 0	real_cost = -16.8329
shub_TS1	costs 0	real_cost = -8.31629
panther2_TS1-scwrl	costs 0	real_cost = -49.9456
panther2_TS1	costs 0	real_cost = -42.6063
nFOLD_TS5-scwrl	costs 0	real_cost = 146.893
nFOLD_TS5	costs 0	real_cost = 259.72
nFOLD_TS4-scwrl	costs 0	real_cost = 161.982
nFOLD_TS4	costs 0	real_cost = 266.632
nFOLD_TS3-scwrl	costs 0	real_cost = 132.615
nFOLD_TS3	costs 0	real_cost = 245.362
nFOLD_TS2-scwrl	costs 0	real_cost = 143.263
nFOLD_TS2	costs 0	real_cost = 283.605
nFOLD_TS1-scwrl	costs 0	real_cost = -8.30788
nFOLD_TS1	costs 0	real_cost = 137.982
mGen-3D_TS1-scwrl	costs 0	real_cost = 60.7745
mGen-3D_TS1	costs 0	real_cost = 184.384
keasar-server_TS5-scwrl	costs 0	real_cost = -83.0197
keasar-server_TS5	costs 0	real_cost = -71.5086
keasar-server_TS4-scwrl	costs 0	real_cost = -141.134
keasar-server_TS4	costs 0	real_cost = -132.852
keasar-server_TS3-scwrl	costs 0	real_cost = -136.545
keasar-server_TS3	costs 0	real_cost = -112.373
keasar-server_TS2-scwrl	costs 0	real_cost = -135.439
keasar-server_TS2	costs 0	real_cost = -125.602
keasar-server_TS1-scwrl	costs 0	real_cost = -109.363
keasar-server_TS1	costs 0	real_cost = -85.6746
karypis.srv_TS5-scwrl	costs 0	real_cost = 299.425
karypis.srv_TS5	costs 0	real_cost = 299.427
karypis.srv_TS4-scwrl	costs 0	real_cost = 385.091
karypis.srv_TS4	costs 0	real_cost = 377.614
karypis.srv_TS3-scwrl	costs 0	real_cost = -109.576
karypis.srv_TS3	costs 0	real_cost = -70.8154
karypis.srv_TS2-scwrl	costs 0	real_cost = -124.256
karypis.srv_TS2	costs 0	real_cost = -135.171
karypis.srv_TS1-scwrl	costs 0	real_cost = -116.474
karypis.srv_TS1	costs 0	real_cost = -129.365
karypis.srv.4_TS5-scwrl	costs 0	real_cost = 322.204
karypis.srv.4_TS5	costs 0	real_cost = 322.209
karypis.srv.4_TS4-scwrl	costs 0	real_cost = 351.994
karypis.srv.4_TS4	costs 0	real_cost = 352.002
karypis.srv.4_TS3-scwrl	costs 0	real_cost = 331.537
karypis.srv.4_TS3	costs 0	real_cost = 331.241
karypis.srv.4_TS2-scwrl	costs 0	real_cost = 292.325
karypis.srv.4_TS2	costs 0	real_cost = 292.894
karypis.srv.2_TS5-scwrl	costs 0	real_cost = -52.3707
karypis.srv.2_TS5	costs 0	real_cost = -51.8842
karypis.srv.2_TS4-scwrl	costs 0	real_cost = -35.3248
karypis.srv.2_TS4	costs 0	real_cost = -36.4623
karypis.srv.2_TS3-scwrl	costs 0	real_cost = -44.4102
karypis.srv.2_TS3	costs 0	real_cost = -43.4197
karypis.srv.2_TS2-scwrl	costs 0	real_cost = -22.7786
karypis.srv.2_TS2	costs 0	real_cost = -22.3029
karypis.srv.2_TS1-scwrl	costs 0	real_cost = -30.9491
karypis.srv.2_TS1	costs 0	real_cost = -32.0004
gtg_AL5-scwrl	costs 0	real_cost = 190.161
gtg_AL5	costs 0	real_cost = 320.651
gtg_AL4-scwrl	costs 0	real_cost = 186.806
gtg_AL4	costs 0	real_cost = 320.116
gtg_AL3-scwrl	costs 0	real_cost = 172.736
gtg_AL3	costs 0	real_cost = 294.415
gtg_AL2-scwrl	costs 0	real_cost = 82.0298
gtg_AL2	costs 0	real_cost = 228.66
gtg_AL1-scwrl	costs 0	real_cost = 117.346
gtg_AL1	costs 0	real_cost = 252.495
forecast-s_AL5-scwrl	costs 0	real_cost = 578.265
forecast-s_AL5	costs 0	real_cost = 676.652
forecast-s_AL4-scwrl	costs 0	real_cost = 454.241
forecast-s_AL4	costs 0	real_cost = 614.67
forecast-s_AL3-scwrl	costs 0	real_cost = 630.159
forecast-s_AL3	costs 0	real_cost = 715.645
forecast-s_AL2-scwrl	costs 0	real_cost = 581.921
forecast-s_AL2	costs 0	real_cost = 683.192
forecast-s_AL1-scwrl	costs 0	real_cost = 78.6359
forecast-s_AL1	costs 0	real_cost = 197.985
beautshotbase_TS1-scwrl	costs 0	real_cost = 74.5183
beautshotbase_TS1	costs 0	real_cost = 76.1567
beautshot_TS1-scwrl	costs 0	real_cost = -17.9932
beautshot_TS1	costs 0	real_cost = -10.7762
Zhang-Server_TS5-scwrl	costs 0	real_cost = 83.216
Zhang-Server_TS5	costs 0	real_cost = 84.4152
Zhang-Server_TS4-scwrl	costs 0	real_cost = -36.0215
Zhang-Server_TS4	costs 0	real_cost = -27.9683
Zhang-Server_TS3-scwrl	costs 0	real_cost = -204.448
Zhang-Server_TS3	costs 0	real_cost = -193.707
Zhang-Server_TS2-scwrl	costs 0	real_cost = -202.251
Zhang-Server_TS2	costs 0	real_cost = -197.188
Zhang-Server_TS1-scwrl	costs 0	real_cost = -191.026
Zhang-Server_TS1	costs 0	real_cost = -191.577
UNI-EID_sfst_AL5-scwrl	costs 0	real_cost = 33.1209
UNI-EID_sfst_AL5	costs 0	real_cost = 214.546
UNI-EID_sfst_AL4-scwrl	costs 0	real_cost = -61.7364
UNI-EID_sfst_AL4	costs 0	real_cost = 116.916
UNI-EID_sfst_AL3-scwrl	costs 0	real_cost = -73.6429
UNI-EID_sfst_AL3	costs 0	real_cost = 120.07
UNI-EID_sfst_AL2-scwrl	costs 0	real_cost = -66.2293
UNI-EID_sfst_AL2	costs 0	real_cost = 120.639
UNI-EID_sfst_AL1-scwrl	costs 0	real_cost = -149.367
UNI-EID_sfst_AL1	costs 0	real_cost = 50.8235
UNI-EID_expm_TS1-scwrl	costs 0	real_cost = -144.978
UNI-EID_expm_TS1	costs 0	real_cost = -2.50111
UNI-EID_bnmx_TS5-scwrl	costs 0	real_cost = 26.7009
UNI-EID_bnmx_TS5	costs 0	real_cost = 212.146
UNI-EID_bnmx_TS4-scwrl	costs 0	real_cost = -61.7173
UNI-EID_bnmx_TS4	costs 0	real_cost = 116.916
UNI-EID_bnmx_TS3-scwrl	costs 0	real_cost = -108.366
UNI-EID_bnmx_TS3	costs 0	real_cost = 78.7995
UNI-EID_bnmx_TS2-scwrl	costs 0	real_cost = -102.172
UNI-EID_bnmx_TS2	costs 0	real_cost = 76.3576
UNI-EID_bnmx_TS1-scwrl	costs 0	real_cost = -149.741
UNI-EID_bnmx_TS1	costs 0	real_cost = 50.5196
SPARKS2_TS5-scwrl	costs 0	real_cost = 15.8902
SPARKS2_TS5	costs 0	real_cost = 13.0797
SPARKS2_TS4-scwrl	costs 0	real_cost = -25.2747
SPARKS2_TS4	costs 0	real_cost = -14.5727
SPARKS2_TS3-scwrl	costs 0	real_cost = -61.0187
SPARKS2_TS3	costs 0	real_cost = -53.8803
SPARKS2_TS2-scwrl	costs 0	real_cost = 30.5945
SPARKS2_TS2	costs 0	real_cost = 35.4864
SPARKS2_TS1-scwrl	costs 0	real_cost = -197.587
SPARKS2_TS1	costs 0	real_cost = -199.906
SP4_TS5-scwrl	costs 0	real_cost = 59.0469
SP4_TS5	costs 0	real_cost = 61.1522
SP4_TS4-scwrl	costs 0	real_cost = -17.0064
SP4_TS4	costs 0	real_cost = -15.6989
SP4_TS3-scwrl	costs 0	real_cost = 29.9943
SP4_TS3	costs 0	real_cost = 30.6587
SP4_TS2-scwrl	costs 0	real_cost = 31.5314
SP4_TS2	costs 0	real_cost = 21.8451
SP4_TS1-scwrl	costs 0	real_cost = -193.986
SP4_TS1	costs 0	real_cost = -195.795
SP3_TS5-scwrl	costs 0	real_cost = 9.80063
SP3_TS5	costs 0	real_cost = 14.845
SP3_TS4-scwrl	costs 0	real_cost = -22.23
SP3_TS4	costs 0	real_cost = -14.7144
SP3_TS3-scwrl	costs 0	real_cost = 8.14867
SP3_TS3	costs 0	real_cost = 18.939
SP3_TS2-scwrl	costs 0	real_cost = 29.4198
SP3_TS2	costs 0	real_cost = 30.0398
SP3_TS1-scwrl	costs 0	real_cost = -192.41
SP3_TS1	costs 0	real_cost = -194.043
SAM_T06_server_TS5-scwrl	costs 0	real_cost = 166.853
SAM_T06_server_TS5	costs 0	real_cost = 129.412
SAM_T06_server_TS4-scwrl	costs 0	real_cost = 105.103
SAM_T06_server_TS4	costs 0	real_cost = 62.9862
SAM_T06_server_TS3-scwrl	costs 0	real_cost = 69.2172
SAM_T06_server_TS3	costs 0	real_cost = 17.9029
SAM_T06_server_TS2-scwrl	costs 0	real_cost = -108.324
SAM_T06_server_TS2	costs 0	real_cost = -115.042
SAM_T06_server_TS1-scwrl	costs 0	real_cost = -154.979
SAM_T06_server_TS1	costs 0	real_cost = -150.999
SAM-T99_AL5-scwrl	costs 0	real_cost = -104.665
SAM-T99_AL5	costs 0	real_cost = 81.3629
SAM-T99_AL4-scwrl	costs 0	real_cost = -115.684
SAM-T99_AL4	costs 0	real_cost = 65.6066
SAM-T99_AL3-scwrl	costs 0	real_cost = -98.3655
SAM-T99_AL3	costs 0	real_cost = 87.3362
SAM-T99_AL2-scwrl	costs 0	real_cost = -127.084
SAM-T99_AL2	costs 0	real_cost = 63.9964
SAM-T99_AL1-scwrl	costs 0	real_cost = -144.102
SAM-T99_AL1	costs 0	real_cost = 51.0143
SAM-T02_AL5-scwrl	costs 0	real_cost = 80.6522
SAM-T02_AL5	costs 0	real_cost = 257.376
SAM-T02_AL4-scwrl	costs 0	real_cost = -133.452
SAM-T02_AL4	costs 0	real_cost = 72.7809
SAM-T02_AL3-scwrl	costs 0	real_cost = -9.67894
SAM-T02_AL3	costs 0	real_cost = 174.865
SAM-T02_AL2-scwrl	costs 0	real_cost = -126.329
SAM-T02_AL2	costs 0	real_cost = 74.6556
SAM-T02_AL1-scwrl	costs 0	real_cost = -66.9775
SAM-T02_AL1	costs 0	real_cost = 115.405
ROKKY_TS5-scwrl	costs 0	real_cost = -154.753
ROKKY_TS5	costs 0	real_cost = -150.875
ROKKY_TS4-scwrl	costs 0	real_cost = -164.284
ROKKY_TS4	costs 0	real_cost = -159.301
ROKKY_TS3-scwrl	costs 0	real_cost = -167.325
ROKKY_TS3	costs 0	real_cost = -169.329
ROKKY_TS2-scwrl	costs 0	real_cost = -167.44
ROKKY_TS2	costs 0	real_cost = -164.477
ROKKY_TS1-scwrl	costs 0	real_cost = 54.5228
ROKKY_TS1	costs 0	real_cost = 60.536
ROBETTA_TS5-scwrl	costs 0	real_cost = 55.6354
ROBETTA_TS5	costs 0	real_cost = 51.9579
ROBETTA_TS4-scwrl	costs 0	real_cost = 56.71
ROBETTA_TS4	costs 0	real_cost = 64.7292
ROBETTA_TS3-scwrl	costs 0	real_cost = 64.2783
ROBETTA_TS3	costs 0	real_cost = 67.0878
ROBETTA_TS2-scwrl	costs 0	real_cost = 40.0124
ROBETTA_TS2	costs 0	real_cost = 44.9886
ROBETTA_TS1-scwrl	costs 0	real_cost = 68.3466
ROBETTA_TS1	costs 0	real_cost = 71.1528
RAPTOR_TS5-scwrl	costs 0	real_cost = -49.8068
RAPTOR_TS5	costs 0	real_cost = -46.9087
RAPTOR_TS4-scwrl	costs 0	real_cost = -36.2794
RAPTOR_TS4	costs 0	real_cost = -34.5626
RAPTOR_TS3-scwrl	costs 0	real_cost = -47.1726
RAPTOR_TS3	costs 0	real_cost = -42.9118
RAPTOR_TS2-scwrl	costs 0	real_cost = -128.209
RAPTOR_TS2	costs 0	real_cost = -128.994
RAPTOR_TS1-scwrl	costs 0	real_cost = -102.385
RAPTOR_TS1	costs 0	real_cost = -101.409
RAPTORESS_TS5-scwrl	costs 0	real_cost = 80.253
RAPTORESS_TS5	costs 0	real_cost = 87.2916
RAPTORESS_TS4-scwrl	costs 0	real_cost = 298.312
RAPTORESS_TS4	costs 0	real_cost = 300.434
RAPTORESS_TS3-scwrl	costs 0	real_cost = 227.702
RAPTORESS_TS3	costs 0	real_cost = 237.223
RAPTORESS_TS2-scwrl	costs 0	real_cost = 118.144
RAPTORESS_TS2	costs 0	real_cost = 124.286
RAPTORESS_TS1-scwrl	costs 0	real_cost = -108.138
RAPTORESS_TS1	costs 0	real_cost = -94.9866
RAPTOR-ACE_TS5-scwrl	costs 0	real_cost = -140.492
RAPTOR-ACE_TS5	costs 0	real_cost = -132.93
RAPTOR-ACE_TS4-scwrl	costs 0	real_cost = -121.569
RAPTOR-ACE_TS4	costs 0	real_cost = -126.424
RAPTOR-ACE_TS3-scwrl	costs 0	real_cost = -48.1246
RAPTOR-ACE_TS3	costs 0	real_cost = -47.7567
RAPTOR-ACE_TS2-scwrl	costs 0	real_cost = -180.149
RAPTOR-ACE_TS2	costs 0	real_cost = -172.28
RAPTOR-ACE_TS1-scwrl	costs 0	real_cost = -192.41
RAPTOR-ACE_TS1	costs 0	real_cost = -194.043
Pmodeller6_TS5-scwrl	costs 0	real_cost = -122.648
Pmodeller6_TS5	costs 0	real_cost = -124.774
Pmodeller6_TS4-scwrl	costs 0	real_cost = -135.705
Pmodeller6_TS4	costs 0	real_cost = -140.142
Pmodeller6_TS3-scwrl	costs 0	real_cost = -169.645
Pmodeller6_TS3	costs 0	real_cost = -173.708
Pmodeller6_TS2-scwrl	costs 0	real_cost = -127.73
Pmodeller6_TS2	costs 0	real_cost = -132.909
Pmodeller6_TS1-scwrl	costs 0	real_cost = -127.73
Pmodeller6_TS1	costs 0	real_cost = -132.909
Phyre-2_TS5-scwrl	costs 0	real_cost = -25.807
Phyre-2_TS5	costs 0	real_cost = -24.4641
Phyre-2_TS4-scwrl	costs 0	real_cost = -15.7748
Phyre-2_TS4	costs 0	real_cost = -15.0333
Phyre-2_TS3-scwrl	costs 0	real_cost = -22.1482
Phyre-2_TS3	costs 0	real_cost = -22.7421
Phyre-2_TS2-scwrl	costs 0	real_cost = -14.5613
Phyre-2_TS2	costs 0	real_cost = -12.7199
Phyre-2_TS1-scwrl	costs 0	real_cost = -16.1782
Phyre-2_TS1	costs 0	real_cost = -17.7707
Phyre-1_TS1-scwrl	costs 0	real_cost = -132.11
Phyre-1_TS1	costs 0	real_cost = -137.859
Pcons6_TS5-scwrl	costs 0	real_cost = -139.755
Pcons6_TS5	costs 0	real_cost = -142.848
Pcons6_TS4-scwrl	costs 0	real_cost = -116.246
Pcons6_TS4	costs 0	real_cost = -119.487
Pcons6_TS3-scwrl	costs 0	real_cost = -151.576
Pcons6_TS3	costs 0	real_cost = -155.158
Pcons6_TS2-scwrl	costs 0	real_cost = -142.29
Pcons6_TS2	costs 0	real_cost = -146.274
Pcons6_TS1-scwrl	costs 0	real_cost = -135.705
Pcons6_TS1	costs 0	real_cost = -140.142
PROTINFO_TS5-scwrl	costs 0	real_cost = -108.835
PROTINFO_TS5	costs 0	real_cost = -104.815
PROTINFO_TS4-scwrl	costs 0	real_cost = -87.3436
PROTINFO_TS4	costs 0	real_cost = -84.8375
PROTINFO_TS3-scwrl	costs 0	real_cost = 49.1707
PROTINFO_TS3	costs 0	real_cost = 50.1362
PROTINFO_TS2-scwrl	costs 0	real_cost = -151.16
PROTINFO_TS2	costs 0	real_cost = -154.16
PROTINFO_TS1-scwrl	costs 0	real_cost = -166.36
PROTINFO_TS1	costs 0	real_cost = -172.186
PROTINFO-AB_TS5-scwrl	costs 0	real_cost = -82.53
PROTINFO-AB_TS5	costs 0	real_cost = -79.8535
PROTINFO-AB_TS4-scwrl	costs 0	real_cost = -125.301
PROTINFO-AB_TS4	costs 0	real_cost = -117.245
PROTINFO-AB_TS3-scwrl	costs 0	real_cost = -112.156
PROTINFO-AB_TS3	costs 0	real_cost = -110.337
PROTINFO-AB_TS2-scwrl	costs 0	real_cost = -87.3436
PROTINFO-AB_TS2	costs 0	real_cost = -84.8375
PROTINFO-AB_TS1-scwrl	costs 0	real_cost = -107.962
PROTINFO-AB_TS1	costs 0	real_cost = -104.604
NN_PUT_lab_TS1-scwrl	costs 0	real_cost = 14.3845
NN_PUT_lab_TS1	costs 0	real_cost = 214.934
MetaTasser_TS5-scwrl	costs 0	real_cost = 22.1399
MetaTasser_TS5	costs 0	real_cost = 26.3492
MetaTasser_TS4-scwrl	costs 0	real_cost = -13.0092
MetaTasser_TS4	costs 0	real_cost = -12.9021
MetaTasser_TS3-scwrl	costs 0	real_cost = -0.166777
MetaTasser_TS3	costs 0	real_cost = -0.974139
MetaTasser_TS2-scwrl	costs 0	real_cost = 25.122
MetaTasser_TS2	costs 0	real_cost = 15.1945
MetaTasser_TS1-scwrl	costs 0	real_cost = -46.8715
MetaTasser_TS1	costs 0	real_cost = -39.4657
Ma-OPUS-server_TS5-scwrl	costs 0	real_cost = 276.918
Ma-OPUS-server_TS5	costs 0	real_cost = 280.408
Ma-OPUS-server_TS4-scwrl	costs 0	real_cost = 4.67334
Ma-OPUS-server_TS4	costs 0	real_cost = 7.46835
Ma-OPUS-server_TS3-scwrl	costs 0	real_cost = -13.6661
Ma-OPUS-server_TS3	costs 0	real_cost = -19.9172
Ma-OPUS-server_TS2-scwrl	costs 0	real_cost = -27.7157
Ma-OPUS-server_TS2	costs 0	real_cost = -29.7101
Ma-OPUS-server_TS1-scwrl	costs 0	real_cost = -187.402
Ma-OPUS-server_TS1	costs 0	real_cost = -187.354
LOOPP_TS5-scwrl	costs 0	real_cost = 32.7725
LOOPP_TS5	costs 0	real_cost = 29.4203
LOOPP_TS4-scwrl	costs 0	real_cost = 49.7425
LOOPP_TS4	costs 0	real_cost = 52.0996
LOOPP_TS3-scwrl	costs 0	real_cost = 112.643
LOOPP_TS3	costs 0	real_cost = 122.173
LOOPP_TS2-scwrl	costs 0	real_cost = -30.7223
LOOPP_TS2	costs 0	real_cost = -26.5595
LOOPP_TS1-scwrl	costs 0	real_cost = -10.7196
LOOPP_TS1	costs 0	real_cost = -7.14579
Huber-Torda-Server_TS5-scwrl	costs 0	real_cost = 669.556
Huber-Torda-Server_TS5	costs 0	real_cost = 708.212
Huber-Torda-Server_TS4-scwrl	costs 0	real_cost = 605.988
Huber-Torda-Server_TS4	costs 0	real_cost = 632.651
Huber-Torda-Server_TS3-scwrl	costs 0	real_cost = 472.094
Huber-Torda-Server_TS3	costs 0	real_cost = 545.853
Huber-Torda-Server_TS2-scwrl	costs 0	real_cost = 539.764
Huber-Torda-Server_TS2	costs 0	real_cost = 602.002
Huber-Torda-Server_TS1-scwrl	costs 0	real_cost = 562.888
Huber-Torda-Server_TS1	costs 0	real_cost = 626.097
HHpred3_TS1-scwrl	costs 0	real_cost = -236.471
HHpred3_TS1	costs 0	real_cost = -220.483
HHpred2_TS1-scwrl	costs 0	real_cost = -236.471
HHpred2_TS1	costs 0	real_cost = -220.483
HHpred1_TS1-scwrl	costs 0	real_cost = -188.587
HHpred1_TS1	costs 0	real_cost = -181.425
GeneSilicoMetaServer_TS5-scwrl	costs 0	real_cost = -186.841
GeneSilicoMetaServer_TS5	costs 0	real_cost = -184.321
GeneSilicoMetaServer_TS4-scwrl	costs 0	real_cost = -165.819
GeneSilicoMetaServer_TS4	costs 0	real_cost = -167.596
GeneSilicoMetaServer_TS3-scwrl	costs 0	real_cost = -158.893
GeneSilicoMetaServer_TS3	costs 0	real_cost = -155.3
GeneSilicoMetaServer_TS2-scwrl	costs 0	real_cost = -157.474
GeneSilicoMetaServer_TS2	costs 0	real_cost = -159.912
GeneSilicoMetaServer_TS1-scwrl	costs 0	real_cost = -169.692
GeneSilicoMetaServer_TS1	costs 0	real_cost = -166.9
Frankenstein_TS5-scwrl	costs 0	real_cost = 34.4848
Frankenstein_TS5	costs 0	real_cost = 53.9459
FUNCTION_TS5-scwrl	costs 0	real_cost = -12.9438
FUNCTION_TS5	costs 0	real_cost = -7.3059
FUNCTION_TS4-scwrl	costs 0	real_cost = -4.20699
FUNCTION_TS4	costs 0	real_cost = -15.1782
FUNCTION_TS3-scwrl	costs 0	real_cost = -166.184
FUNCTION_TS3	costs 0	real_cost = -164.598
FUNCTION_TS2-scwrl	costs 0	real_cost = -131.695
FUNCTION_TS2	costs 0	real_cost = -127.558
FUNCTION_TS1-scwrl	costs 0	real_cost = -143.306
FUNCTION_TS1	costs 0	real_cost = -154.219
FUGUE_AL5-scwrl	costs 0	real_cost = 207.846
FUGUE_AL5	costs 0	real_cost = 385.414
FUGUE_AL4-scwrl	costs 0	real_cost = 466.343
FUGUE_AL4	costs 0	real_cost = 533.738
FUGUE_AL3-scwrl	costs 0	real_cost = 172.005
FUGUE_AL3	costs 0	real_cost = 290.147
FUGUE_AL2-scwrl	costs 0	real_cost = 114.968
FUGUE_AL2	costs 0	real_cost = 282.548
FUGUE_AL1-scwrl	costs 0	real_cost = -143.594
FUGUE_AL1	costs 0	real_cost = 59.1526
FUGMOD_TS5-scwrl	costs 0	real_cost = 137.037
FUGMOD_TS5	costs 0	real_cost = 141.812
FUGMOD_TS4-scwrl	costs 0	real_cost = 456.384
FUGMOD_TS4	costs 0	real_cost = 451.072
FUGMOD_TS3-scwrl	costs 0	real_cost = 167.417
FUGMOD_TS3	costs 0	real_cost = 167.343
FUGMOD_TS2-scwrl	costs 0	real_cost = 72.2445
FUGMOD_TS2	costs 0	real_cost = 64.3747
FUGMOD_TS1-scwrl	costs 0	real_cost = -144.804
FUGMOD_TS1	costs 0	real_cost = -139.722
FPSOLVER-SERVER_TS5-scwrl	costs 0	real_cost = 286.369
FPSOLVER-SERVER_TS5	costs 0	real_cost = 288.954
FPSOLVER-SERVER_TS4-scwrl	costs 0	real_cost = 308.843
FPSOLVER-SERVER_TS4	costs 0	real_cost = 310.837
FPSOLVER-SERVER_TS3-scwrl	costs 0	real_cost = 298.946
FPSOLVER-SERVER_TS3	costs 0	real_cost = 300.268
FPSOLVER-SERVER_TS2-scwrl	costs 0	real_cost = 297.876
FPSOLVER-SERVER_TS2	costs 0	real_cost = 300.808
FPSOLVER-SERVER_TS1-scwrl	costs 0	real_cost = 319.369
FPSOLVER-SERVER_TS1	costs 0	real_cost = 322.398
FORTE2_AL5-scwrl	costs 0	real_cost = 340.589
FORTE2_AL5	costs 0	real_cost = 514.554
FORTE2_AL4-scwrl	costs 0	real_cost = 172.83
FORTE2_AL4	costs 0	real_cost = 334.789
FORTE2_AL3-scwrl	costs 0	real_cost = 190.122
FORTE2_AL3	costs 0	real_cost = 363.009
FORTE2_AL2-scwrl	costs 0	real_cost = 151.965
FORTE2_AL2	costs 0	real_cost = 330.486
FORTE2_AL1-scwrl	costs 0	real_cost = -134.473
FORTE2_AL1	costs 0	real_cost = 74.3305
FORTE1_AL5-scwrl	costs 0	real_cost = 340.589
FORTE1_AL5	costs 0	real_cost = 514.554
FORTE1_AL4-scwrl	costs 0	real_cost = 172.83
FORTE1_AL4	costs 0	real_cost = 334.789
FORTE1_AL3-scwrl	costs 0	real_cost = 190.122
FORTE1_AL3	costs 0	real_cost = 363.009
FORTE1_AL2-scwrl	costs 0	real_cost = 151.965
FORTE1_AL2	costs 0	real_cost = 330.486
FORTE1_AL1-scwrl	costs 0	real_cost = -134.473
FORTE1_AL1	costs 0	real_cost = 74.3305
FOLDpro_TS5-scwrl	costs 0	real_cost = 325.99
FOLDpro_TS5	costs 0	real_cost = 326.135
FOLDpro_TS4-scwrl	costs 0	real_cost = 361.369
FOLDpro_TS4	costs 0	real_cost = 361.47
FOLDpro_TS3-scwrl	costs 0	real_cost = 128.652
FOLDpro_TS3	costs 0	real_cost = 133.283
FOLDpro_TS2-scwrl	costs 0	real_cost = 298.141
FOLDpro_TS2	costs 0	real_cost = 304.453
FOLDpro_TS1-scwrl	costs 0	real_cost = -169.807
FOLDpro_TS1	costs 0	real_cost = -161.136
FAMS_TS5-scwrl	costs 0	real_cost = -190.221
FAMS_TS5	costs 0	real_cost = -187.842
FAMS_TS4-scwrl	costs 0	real_cost = -160.391
FAMS_TS4	costs 0	real_cost = -155.506
FAMS_TS3-scwrl	costs 0	real_cost = -196.894
FAMS_TS3	costs 0	real_cost = -200.252
FAMS_TS2-scwrl	costs 0	real_cost = -163.623
FAMS_TS2	costs 0	real_cost = -154.96
FAMS_TS1-scwrl	costs 0	real_cost = -27.0124
FAMS_TS1	costs 0	real_cost = -37.9839
FAMSD_TS5-scwrl	costs 0	real_cost = -36.0037
FAMSD_TS5	costs 0	real_cost = -33.6255
FAMSD_TS4-scwrl	costs 0	real_cost = -126.843
FAMSD_TS4	costs 0	real_cost = -129.672
FAMSD_TS3-scwrl	costs 0	real_cost = -171.368
FAMSD_TS3	costs 0	real_cost = -159.106
FAMSD_TS2-scwrl	costs 0	real_cost = -138.79
FAMSD_TS2	costs 0	real_cost = -138.023
FAMSD_TS1-scwrl	costs 0	real_cost = -176.351
FAMSD_TS1	costs 0	real_cost = -166.932
Distill_TS5-scwrl	costs 0	real_cost = 520.742
Distill_TS4-scwrl	costs 0	real_cost = 520.939
Distill_TS3-scwrl	costs 0	real_cost = 532.105
Distill_TS2-scwrl	costs 0	real_cost = 532.989
Distill_TS1-scwrl	costs 0	real_cost = 540.976
CaspIta-FOX_TS5-scwrl	costs 0	real_cost = -42.1635
CaspIta-FOX_TS5	costs 0	real_cost = -46.178
CaspIta-FOX_TS4-scwrl	costs 0	real_cost = 34.0455
CaspIta-FOX_TS4	costs 0	real_cost = 34.4741
CaspIta-FOX_TS3-scwrl	costs 0	real_cost = -120.763
CaspIta-FOX_TS3	costs 0	real_cost = -129.015
CaspIta-FOX_TS2-scwrl	costs 0	real_cost = -101.191
CaspIta-FOX_TS2	costs 0	real_cost = -110.746
CaspIta-FOX_TS1-scwrl	costs 0	real_cost = 29.0151
CaspIta-FOX_TS1	costs 0	real_cost = 21.5365
CPHmodels_TS1-scwrl	costs 0	real_cost = 1036.47
CPHmodels_TS1	costs 0	real_cost = 1034.27
CIRCLE_TS5-scwrl	costs 0	real_cost = -171.368
CIRCLE_TS5	costs 0	real_cost = -159.106
CIRCLE_TS4-scwrl	costs 0	real_cost = -196.894
CIRCLE_TS4	costs 0	real_cost = -200.252
CIRCLE_TS3-scwrl	costs 0	real_cost = -163.623
CIRCLE_TS3	costs 0	real_cost = -154.96
CIRCLE_TS2-scwrl	costs 0	real_cost = -160.391
CIRCLE_TS2	costs 0	real_cost = -155.506
CIRCLE_TS1-scwrl	costs 0	real_cost = -190.221
CIRCLE_TS1	costs 0	real_cost = -187.842
Bilab-ENABLE_TS5-scwrl	costs 0	real_cost = 30.0543
Bilab-ENABLE_TS5	costs 0	real_cost = 31.5459
Bilab-ENABLE_TS4-scwrl	costs 0	real_cost = 5.25133
Bilab-ENABLE_TS4	costs 0	real_cost = 7.19261
Bilab-ENABLE_TS3-scwrl	costs 0	real_cost = -175.864
Bilab-ENABLE_TS3	costs 0	real_cost = -175.544
Bilab-ENABLE_TS2-scwrl	costs 0	real_cost = -175.857
Bilab-ENABLE_TS2	costs 0	real_cost = -177.506
Bilab-ENABLE_TS1-scwrl	costs 0	real_cost = 30.3417
Bilab-ENABLE_TS1	costs 0	real_cost = 29.3439
BayesHH_TS1-scwrl	costs 0	real_cost = -185.95
BayesHH_TS1	costs 0	real_cost = -179.11
ABIpro_TS5-scwrl	costs 0	real_cost = 257.285
ABIpro_TS5	costs 0	real_cost = 257.755
ABIpro_TS4-scwrl	costs 0	real_cost = 267.02
ABIpro_TS4	costs 0	real_cost = 267.037
ABIpro_TS3-scwrl	costs 0	real_cost = 263.252
ABIpro_TS3	costs 0	real_cost = 262.958
ABIpro_TS2-scwrl	costs 0	real_cost = 240.121
ABIpro_TS2	costs 0	real_cost = 241.017
ABIpro_TS1-scwrl	costs 0	real_cost = 272.14
ABIpro_TS1	costs 0	real_cost = 272.934
3Dpro_TS5-scwrl	costs 0	real_cost = 77.5766
3Dpro_TS5	costs 0	real_cost = 81.7936
3Dpro_TS4-scwrl	costs 0	real_cost = 79.1989
3Dpro_TS4	costs 0	real_cost = 83.8504
3Dpro_TS3-scwrl	costs 0	real_cost = 97.4773
3Dpro_TS3	costs 0	real_cost = 96.5969
3Dpro_TS2-scwrl	costs 0	real_cost = 188.018
3Dpro_TS2	costs 0	real_cost = 193.236
3Dpro_TS1-scwrl	costs 0	real_cost = -178.861
3Dpro_TS1	costs 0	real_cost = -167.372
3D-JIGSAW_TS5-scwrl	costs 0	real_cost = -107.265
3D-JIGSAW_TS5	costs 0	real_cost = -96.7417
3D-JIGSAW_TS4-scwrl	costs 0	real_cost = 102.756
3D-JIGSAW_TS4	costs 0	real_cost = 103.158
3D-JIGSAW_TS3-scwrl	costs 0	real_cost = -104.745
3D-JIGSAW_TS3	costs 0	real_cost = -93.9261
3D-JIGSAW_TS2-scwrl	costs 0	real_cost = -108.194
3D-JIGSAW_TS2	costs 0	real_cost = -103.833
3D-JIGSAW_TS1-scwrl	costs 0	real_cost = -91.4249
3D-JIGSAW_TS1	costs 0	real_cost = -87.7793
3D-JIGSAW_RECOM_TS5-scwrl	costs 0	real_cost = -82.7763
3D-JIGSAW_RECOM_TS5	costs 0	real_cost = -75.8634
3D-JIGSAW_RECOM_TS4-scwrl	costs 0	real_cost = -80.0296
3D-JIGSAW_RECOM_TS4	costs 0	real_cost = -70.3168
3D-JIGSAW_RECOM_TS3-scwrl	costs 0	real_cost = -101.78
3D-JIGSAW_RECOM_TS3	costs 0	real_cost = -108.78
3D-JIGSAW_RECOM_TS2-scwrl	costs 0	real_cost = -98.7918
3D-JIGSAW_RECOM_TS2	costs 0	real_cost = -103.117
3D-JIGSAW_RECOM_TS1-scwrl	costs 0	real_cost = -102.027
3D-JIGSAW_RECOM_TS1	costs 0	real_cost = -104.441
3D-JIGSAW_POPULUS_TS5-scwrl	costs 0	real_cost = -97.6293
3D-JIGSAW_POPULUS_TS5	costs 0	real_cost = -103.219
3D-JIGSAW_POPULUS_TS4-scwrl	costs 0	real_cost = -106.24
3D-JIGSAW_POPULUS_TS4	costs 0	real_cost = -112.566
3D-JIGSAW_POPULUS_TS3-scwrl	costs 0	real_cost = -114.275
3D-JIGSAW_POPULUS_TS3	costs 0	real_cost = -116.612
3D-JIGSAW_POPULUS_TS2-scwrl	costs 0	real_cost = -109.668
3D-JIGSAW_POPULUS_TS2	costs 0	real_cost = -115.842
3D-JIGSAW_POPULUS_TS1-scwrl	costs 0	real_cost = -114.885
3D-JIGSAW_POPULUS_TS1	costs 0	real_cost = -119.208
dimer//dimer-try9-1t4bA	costs 0	real_cost = -228.456
dimer//dimer-try8-1t4bA	costs 0	real_cost = -233.367
dimer//dimer-try7-1t4bA	costs 0	real_cost = -162.331
dimer//try1-opt2.unpack	costs 0	real_cost = -165.014
dimer//try1-opt2.repack-nonPC	costs 0	real_cost = -165.493
dimer//try1-opt2	costs 0	real_cost = -165.014
dimer//try1-opt2.gromacs0	costs 0	real_cost = -162.56
dimer//try1-opt1	costs 0	real_cost = -164.879
dimer//try1-opt1-scwrl	costs 0	real_cost = -166.007
from-dimer-try1-opt2-A.pdb.gz	costs 0	real_cost = -165.014
T0298.try9-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -229.388
T0298.try9-opt2.pdb.gz	costs 0	real_cost = -228.481
T0298.try9-opt2.gromacs0.pdb.gz	costs 0	real_cost = -230.426
T0298.try9-opt1.pdb.gz	costs 0	real_cost = -228.788
T0298.try9-opt1-scwrl.pdb.gz	costs 0	real_cost = -230.392
T0298.try8-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -230.154
T0298.try8-opt2.pdb.gz	costs 0	real_cost = -233.282
T0298.try8-opt2.gromacs0.pdb.gz	costs 0	real_cost = -232.494
T0298.try8-opt1.pdb.gz	costs 0	real_cost = -237.359
T0298.try8-opt1-scwrl.pdb.gz	costs 0	real_cost = -236.825
T0298.try7-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -161.975
T0298.try7-opt2.pdb.gz	costs 0	real_cost = -162.717
T0298.try7-opt2.gromacs0.pdb.gz	costs 0	real_cost = -160.04
T0298.try7-opt1.pdb.gz	costs 0	real_cost = -160.497
T0298.try7-opt1-scwrl.pdb.gz	costs 0	real_cost = -167.083
T0298.try6-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -161.232
T0298.try6-opt2.pdb.gz	costs 0	real_cost = -160.117
T0298.try6-opt2.gromacs0.pdb.gz	costs 0	real_cost = -160.326
T0298.try6-opt1.pdb.gz	costs 0	real_cost = -161.399
T0298.try6-opt1-scwrl.pdb.gz	costs 0	real_cost = -164.579
T0298.try5-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -167.913
T0298.try5-opt2.pdb.gz	costs 0	real_cost = -169.88
T0298.try5-opt2.gromacs0.pdb.gz	costs 0	real_cost = -170.933
T0298.try5-opt1.pdb.gz	costs 0	real_cost = -169.247
T0298.try5-opt1-scwrl.pdb.gz	costs 0	real_cost = -168.762
T0298.try4-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -139.179
T0298.try4-opt2.pdb.gz	costs 0	real_cost = -140.703
T0298.try4-opt2.gromacs0.pdb.gz	costs 0	real_cost = -143.082
T0298.try4-opt1.pdb.gz	costs 0	real_cost = -143.035
T0298.try4-opt1-scwrl.pdb.gz	costs 0	real_cost = -142.8
T0298.try3-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -167.182
T0298.try3-opt2.pdb.gz	costs 0	real_cost = -168.733
T0298.try3-opt2.gromacs0.pdb.gz	costs 0	real_cost = -167.619
T0298.try3-opt1.pdb.gz	costs 0	real_cost = -167.197
T0298.try3-opt1-scwrl.pdb.gz	costs 0	real_cost = -166.894
T0298.try2-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -160.526
T0298.try2-opt2.pdb.gz	costs 0	real_cost = -162.858
T0298.try2-opt2.gromacs0.pdb.gz	costs 0	real_cost = -162.354
T0298.try2-opt1.pdb.gz	costs 0	real_cost = -158.54
T0298.try2-opt1-scwrl.pdb.gz	costs 0	real_cost = -159.047
T0298.try1-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -164.32
T0298.try1-opt2.pdb.gz	costs 0	real_cost = -158.344
T0298.try1-opt2.gromacs0.pdb.gz	costs 0	real_cost = -155.793
T0298.try1-opt1.pdb.gz	costs 0	real_cost = -161.114
T0298.try1-opt1-scwrl.pdb.gz	costs 0	real_cost = -158.319
../model5.ts-submitted	costs 0	real_cost = -160.173
../model4.ts-submitted	costs 0	real_cost = -158.037
../model3.ts-submitted	costs 0	real_cost = -233.19
../model2.ts-submitted	costs 0	real_cost = -164.729
../model1.ts-submitted	costs 0	real_cost = -228.591
align5	costs 0	real_cost = 147.86
align4	costs 0	real_cost = 120.661
align3	costs 0	real_cost = 50.1636
align2	costs 0	real_cost = -17.2105
align1	costs 0	real_cost = -115.605
T0298.try1-opt2.pdb	costs 0	real_cost = -158.35
model5-scwrl	costs 0	real_cost = -165.909
model5.ts-submitted	costs 0	real_cost = -160.173
model4-scwrl	costs 0	real_cost = -160.808
model4.ts-submitted	costs 0	real_cost = -158.037
model3-scwrl	costs 0	real_cost = -233.763
model3.ts-submitted	costs 0	real_cost = -233.19
model2-scwrl	costs 0	real_cost = -165.632
model2.ts-submitted	costs 0	real_cost = -164.729
model1-scwrl	costs 0	real_cost = -227.763
model1.ts-submitted	costs 0	real_cost = -228.591
T0298_2.real.pdb	costs 0	real_cost = -677.4
# command:CPU_time= 829.154 sec, elapsed time= 1200.97 sec)
# command:rm -f sort.tmp
/projects/compbio/bin/sorttbl real_cost < decoys/evaluate_2.rdb > sort.tmp
mv -f sort.tmp decoys/evaluate_2.rdb
mv -f decoys/evaluate_2.pretty decoys/evaluate_2.pretty.old
mv: cannot stat `decoys/evaluate_2.pretty': No such file or directory
make: [decoys/evaluate_2.pretty] Error 1 (ignored)
/projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_2.rdb > decoys/evaluate_2.pretty