Best Alignments for T0298

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1gd1O/T0298-1gd1O-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gd1O/T0298-1gd1O-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3574e-462.88e-152 1dssG c.2.1.3
d.81.1.1
1drw/T0298-1drw-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1drw/T0298-1drw-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3936e-099.59e-44 1drw c.2.1.3
d.81.1.3
1f06A/T0298-1f06A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f06A/T0298-1f06A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2321e-091.48e-46 1dapA c.2.1.3
d.81.1.3
2bkaA/T0298-2bkaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bkaA/T0298-2bkaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2429e-072.49e-39
1hyeA/T0298-1hyeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hyeA/T0298-1hyeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3915e-072.32e-39 2cmd c.2.1.5
d.162.1.1
1u8fO/T0298-1u8fO-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u8fO/T0298-1u8fO-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0735e-032.76e-154
1znqO/T0298-1znqO-t06-global-adpstyle1.a2m 1znqO/T0298-1znqO-t06-global-adpstyle1.al 2.5915e-033.34e-74
2b4rO/T0298-2b4rO-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b4rO/T0298-2b4rO-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1934e-031.98e-160
1cerA/T0298-1cerA-t06-global-adpstyle1.a2m 1cerA/T0298-1cerA-t06-global-adpstyle1.al 8.2943e-033.34e-74
1ywgO/T0298-1ywgO-t06-global-adpstyle1.a2m 1ywgO/T0298-1ywgO-t06-global-adpstyle1.al 9.0491e-033.34e-74

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001