# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1es9A 232 2.94e-17 1wab c.23.10.3 31340 1ivnA 190 3.30e-16 c.23.10.5 83719 1k7cA 233 1.46e-11 c.23.10.4 68267 1esc 306 2.12e-11 1esc c.23.10.1 31334 1bqcA 302 4.11e-03 1bqcA c.1.8.3 28831 1hdoA 206 1.60e-02 1he2A c.2.1.2 60965 1mh1 186 2.06e-02 1eesA c.37.1.8 32002 1c9kA 180 2.47e-02 1c9kB c.37.1.11 32363 1dljA 402 2.91e-02 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1ek6A 348 2.99e-02 1xel c.2.1.2 29800 1y80A 210 3.05e-02 1m3uA 264 3.46e-02 c.1.12.8 84784 1g0cA 364 3.56e-02 7a3hA c.1.8.3 60165 1m7bA 184 3.92e-02 c.37.1.8 74572 1h1nA 305 4.33e-02 c.1.8.3 70855 1fobA 334 4.72e-02 c.1.8.3 83255 1hl2A 297 5.40e-02 c.1.10.1 83581 1n82A 331 6.48e-02 c.1.8.3 91703 1uteA 313 6.54e-02 1uteA d.159.1.1 42078 1t2dA 322 7.74e-02 c.2.1.5,d.162.1.1 99084,99085 1kmqA 184 7.79e-02 c.37.1.8 84412 1j3bA 529 8.11e-02 c.91.1.1,c.109.1.1 77071,77072 1r6xA 395 8.47e-02 b.122.1.3,c.26.1.5 97167,97168 1rkd 309 8.95e-02 1rkd c.72.1.1 34928 1ytlA 174 9.40e-02 1hkhA 279 1.04e-01 c.69.1.12 90628 1hjsA 332 1.09e-01 c.1.8.3 83492 1edg 380 1.16e-01 1edg c.1.8.3 28807 1nf3A 195 1.18e-01 c.37.1.8 85594 1gq6A 313 1.30e-01 c.42.1.1 70341 1rqbA 539 1.30e-01 a.5.7.2,c.1.10.5 105057,105058 1e19A 314 1.31e-01 1b7bA c.73.1.1 34967 1nar 290 1.49e-01 1nar c.1.8.5 28988 1mtzA 293 1.52e-01 c.69.1.7 79467 1h65A 270 1.72e-01 c.37.1.8 65640 1cqxA 403 1.76e-01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1q1aA 289 1.90e-01 c.31.1.5 95561 1v7zA 260 1.93e-01 c.125.1.1 100488 1nbaA 264 2.01e-01 1nbaA c.33.1.3 31753 1t71A 281 2.21e-01 1o08A 221 2.22e-01 c.108.1.6 86525 1qv9A 283 2.36e-01 c.127.1.1 96356 1tqhA 247 2.82e-01 c.69.1.29 107225 1m65A 245 2.92e-01 c.6.3.1 84847 1hrkA 359 2.95e-01 1hrkA c.92.1.1 61228 1ars 396 3.09e-01 1ajsA c.67.1.1 34287 1o5xA 248 3.09e-01 c.1.1.1 92528 4uagA 437 3.53e-01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1o7jA 327 3.59e-01 c.88.1.1 81140 1k07A 263 3.61e-01 d.157.1.1 77218 1qwnA 1045 3.69e-01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1f0kA 364 3.93e-01 1f0kA c.87.1.2 35465 1vybA 238 4.08e-01 d.151.1.1 108897 1k20A 310 4.48e-01 c.107.1.1 68027 1pwxA 254 4.52e-01 c.2.1.2 95262 1ki9A 192 4.56e-01 c.37.1.1 84404 1ako 268 4.58e-01 1ako d.151.1.1 41779 1jflA 228 4.85e-01 c.78.2.1,c.78.2.1 71656,71657 1orrA 347 4.86e-01 c.2.1.2 93460 1ltqA 301 5.00e-01 c.108.1.9,c.37.1.1 78208,78209 1lqaA 346 5.16e-01 c.1.7.1 84674 1ijbA 202 5.32e-01 c.62.1.1 71229 1lqtA 456 5.38e-01 c.3.1.1,c.4.1.1 74198,74199 1cs1A 386 5.38e-01 1ibjA c.67.1.3 34399 1kwmA 402 5.44e-01 c.56.5.1,d.58.3.1 73079,73080 1vmeA 410 5.86e-01 c.23.5.1,d.157.1.3 108893,108894 1c93A 265 5.87e-01 2ebn c.1.8.5 28998 1nofA 383 5.90e-01 b.71.1.2,c.1.8.3 92020,92021 1edt 271 6.08e-01 2ebn c.1.8.5 28993 1bn7A 294 6.17e-01 1bn6A c.69.1.8 34677 1rypK 198 6.31e-01 d.153.1.4 41879 1itxA 419 6.38e-01 c.1.8.5,d.26.3.1 71425,71426 1geeA 261 6.66e-01 c.2.1.2 90509 1eceA 358 6.82e-01 1eceA c.1.8.3 28813 1b5qA 472 7.29e-01 1b37B c.3.1.2,d.16.1.5 30404,37968 1exbA 332 7.33e-01 1qrqA c.1.7.1 28666 1tmy 120 7.38e-01 1dbwA c.23.1.1 31083 1bdb 277 7.62e-01 1bdb c.2.1.2 29874 1rlmA 271 7.74e-01 1ag9A 175 7.90e-01 1rcf c.23.5.1 31178 1inlA 296 7.98e-01 c.66.1.17 66220 1iynA 295 8.76e-01 a.93.1.1 90722 1ktbA 405 9.01e-01 b.71.1.1,c.1.8.1 72960,72961 1a0cA 438 9.10e-01 1a0cA c.1.15.3 29529 1t3iA 420 9.26e-01 c.67.1.3 106354 1w6uA 302 9.26e-01 1t64A 377 9.62e-01 c.42.1.2 106543 1cjcA 460 9.95e-01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1nhs 447 1.00e+00 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1ug6A 431 1.01e+00 c.1.8.4 88490 1rjdA 334 1.03e+00 c.66.1.37 97558 2gqrA 237 1.04e+00 1d3yA 301 1.06e+00 1d3yA e.12.1.1 43252 1pzgA 331 1.07e+00 c.2.1.5,d.162.1.1 95425,95426 1gtkA 313 1.09e+00 c.94.1.1,d.50.2.1 76346,76347 1sbyA 254 1.10e+00 1fh9A 312 1.15e+00 1taxA c.1.8.3 28913 1p1jA 533 1.16e+00 c.2.1.3,d.81.1.3 87687,87688 1nnlA 225 1.17e+00 c.108.1.4 85906 1qnrA 344 1.22e+00 1qnoA c.1.8.3 28834 1o4sA 389 1.23e+00 c.67.1.1 86620 1kv5A 250 1.23e+00 c.1.1.1 73052 1jndA 420 1.25e+00 c.1.8.5,d.26.3.1 71757,71758 1b8oA 284 1.30e+00 1b8oA c.56.2.1 33762 1augA 215 1.34e+00 1a2zA c.56.4.1 33798 1o5kA 306 1.34e+00 c.1.10.1 92504 1jhdA 396 1.36e+00 b.122.1.3,c.26.1.5 66712,66713 1j6oA 268 1.36e+00 c.1.9.12 77088 1m2kA 249 1.37e+00 c.31.1.5 84754 1vhqA 232 1.43e+00 c.23.16.2 100696 1qf9A 194 1.44e+00 1zin c.37.1.1 31848 2gk3A 256 1.44e+00 1j2rA 199 1.45e+00 c.33.1.3 90788 1xu9A 286 1.45e+00 1wd3A 482 1.48e+00 b.29.1.21,b.42.8.1 109233,109234 1dozA 309 1.48e+00 1ak1 c.92.1.1 35592 1txgA 335 1.48e+00 1ihoA 283 1.52e+00 1ihoA c.26.1.4 62390 1ayl 541 1.58e+00 1ayl c.91.1.1,c.109.1.1 64718,64719 2gdjA 264 1.58e+00 1rkqA 282 1.61e+00 c.108.1.10 97621 1xq6A 253 1.61e+00 1dl5A 317 1.62e+00 1dl5A c.66.1.7,d.197.1.1 64720,64721 1m6jA 261 1.62e+00 c.1.1.1 78693 1hd7A 318 1.62e+00 1bix d.151.1.1 41780 1dkuA 317 1.62e+00 1dkuA c.61.1.2,c.61.1.2 34118,34119 1bw0A 416 1.63e+00 1bw0A c.67.1.1 34385 1m6yA 301 1.65e+00 a.60.13.1,c.66.1.23 78716,78717 1khtA 192 1.67e+00 c.37.1.1 84401 1mldA 314 1.69e+00 2cmd c.2.1.5,d.162.1.1 30122,42089 1odzA 386 1.70e+00 c.1.8.3 86889 1d4oA 184 1.70e+00 1d4oA c.31.1.4 31748 1h6dA 433 1.78e+00 c.2.1.3,d.81.1.5 65656,65657 1hqsA 423 1.80e+00 1iso c.77.1.1 61154 1muwA 386 1.83e+00 c.1.15.3 79495 1q0qA 406 1.84e+00 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1spxA 278 1.87e+00 c.2.1.2 98958 1qgdA 662 1.90e+00 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1iy8A 267 1.90e+00 c.2.1.2 83774 1p9bA 442 1.90e+00 c.37.1.10 94385 1fcqA 350 1.97e+00 c.1.8.9 65006 1php 394 1.98e+00 16pk c.86.1.1 35452 1j31A 262 2.02e+00 d.160.1.2 90808 1gteA 1025 2.06e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1kwgA 645 2.07e+00 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1sgjA 284 2.08e+00 c.1.12.5 105535 1jubA 311 2.10e+00 c.1.4.1 90908 1rvkA 382 2.14e+00 c.1.11.2,d.54.1.1 97928,97929 1n55A 251 2.15e+00 c.1.1.1 80007 1jcfA 344 2.17e+00 c.55.1.1,c.55.1.1 62878,62879 1nnsA 326 2.17e+00 c.88.1.1 85910 1gy8A 397 2.20e+00 c.2.1.2 83376 1gqiA 708 2.21e+00 c.1.8.10,d.92.2.2 76279,76280 1kblA 873 2.24e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1k77A 260 2.27e+00 c.1.15.5 72096 1gwiA 411 2.28e+00 a.104.1.1 76364 1c3pA 375 2.30e+00 1c3pA c.42.1.2 32606 1dtdA 303 2.33e+00 1aye c.56.5.1 33823 1lw7A 365 2.38e+00 c.26.1.3,c.37.1.1 74295,74296 1gpuA 680 2.45e+00 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1l8nA 679 2.45e+00 c.1.8.10,d.92.2.2 84564,84565 1k7hA 476 2.48e+00 c.76.1.1 72101 1d2nA 272 2.52e+00 1d2nA c.37.1.20 32428 1rq2A 382 2.53e+00 c.32.1.1,d.79.2.1 105048,105049 1neyA 247 2.59e+00 c.1.1.1 80449 1svsA 353 2.68e+00 c.37.1.8 106051 1im8A 244 2.69e+00 c.66.1.14 66212 2cdnA 201 2.71e+00 1t5bA 201 2.72e+00 c.23.5.3 106433 1n2eA 300 2.73e+00 c.26.1.4 85268 1uuqA 440 2.74e+00 c.1.8.3 100015 1s95A 333 2.78e+00 d.159.1.3 105375 1qsgA 265 2.83e+00 1eny c.2.1.2 29935 1ogiA 303 2.86e+00 b.43.4.2,c.25.1.1 92914,92915 1r9jA 673 2.89e+00 1b6g 310 2.98e+00 1b6g c.69.1.8 34661 1tjyA 316 2.99e+00 c.93.1.1 107062 1xfkA 336 3.01e+00 1vp8A 201 3.04e+00 1jdc 429 3.09e+00 1jdc b.71.1.1,c.1.8.1 27789,28776 1r9dA 787 3.12e+00 c.7.1.1 104865 1kyhA 276 3.13e+00 c.72.1.4 73222 1ffyA 917 3.18e+00 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1cex 214 3.21e+00 1cex c.69.1.30 31285 1b5pA 385 3.30e+00 c.67.1.1 90403 2gf9A 189 3.31e+00 1sr9A 644 3.32e+00 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1hp1A 516 3.38e+00 d.114.1.1,d.159.1.2 70976,70977 1mnaA 298 3.44e+00 c.69.1.22 79322 1qj4A 257 3.49e+00 1qj4A c.69.1.20 34796 1guzA 310 3.49e+00 c.2.1.5,d.162.1.1 65586,65587 1h8eD 482 3.52e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1duvG 333 3.57e+00 1othA c.78.1.1,c.78.1.1 35228,35229 1toaA 313 3.58e+00 1toaA c.92.2.2 35598 1jq5A 370 3.58e+00 e.22.1.2 67084 1ei6A 406 3.72e+00 c.76.1.4 90443 1l1eA 287 3.75e+00 c.66.1.18 73454 1mo0A 275 3.77e+00 c.1.1.1 79329 1r2rA 248 3.77e+00 c.1.1.1 96875 1tk9A 188 3.78e+00 c.80.1.3 107082 1fj2A 232 3.81e+00 1auoA c.69.1.14 34720 1nffA 260 3.84e+00 c.2.1.2 80457 1c7gA 456 3.86e+00 c.67.1.2 90415 1jakA 512 3.89e+00 c.1.8.6,d.92.2.1 66472,66473 1cb0A 283 3.94e+00 1cb0A c.56.2.1 33790 1oyc 400 4.01e+00 1oyc c.1.4.1 28603 1r3dA 264 4.01e+00 1q6zA 528 4.10e+00 1oktA 211 4.11e+00 a.45.1.1,c.47.1.5 93272,93273 1d0cA 444 4.21e+00 d.174.1.1 64769 1yx1A 264 4.23e+00 1jtvA 327 4.29e+00 c.2.1.2 84230 1wr8A 231 4.30e+00 1ny1A 240 4.35e+00 c.6.2.3 86395 1yc5A 246 4.39e+00 1sznA 417 4.44e+00 b.71.1.1,c.1.8.1 106162,106163 1m6eX 359 4.45e+00 c.66.1.35 91188 1bf6A 291 4.45e+00 1pscA c.1.9.3 29065 1ad2 228 4.48e+00 1ad2 e.24.1.1 43353 1ta3B 303 4.48e+00 c.1.8.3 106732 1tib 269 4.53e+00 3tgl c.69.1.17 34738 1bg4 302 4.53e+00 1taxA c.1.8.3 28806 1oaa 259 4.56e+00 1oaa c.2.1.2 29829 1knwA 425 4.61e+00 b.49.2.3,c.1.6.1 90969,90970 1jf9A 408 4.63e+00 1c0nA c.67.1.3 62931 1uuyA 167 4.69e+00 c.57.1.1 108059 1eu8A 409 4.70e+00 1eu8A c.94.1.1 59502 8abp 306 4.70e+00 8abp c.93.1.1 35647 1fcdA 401 4.72e+00 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1mwmA 320 4.74e+00 c.55.1.1,c.55.1.1 79580,79581 1gnxA 479 4.74e+00 c.1.8.4 76241 1n2sA 299 4.78e+00 c.2.1.2 79857 1d3cA 686 4.79e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2ck3D 482 4.83e+00 1reqB 637 4.83e+00 1reqB c.1.19.1,c.23.6.1 29621,31248 1eyeA 280 4.86e+00 1aj2 c.1.21.1 29672 1lj8A 493 4.87e+00 a.100.1.9,c.2.1.6 90392,90393 1p5fA 189 4.88e+00 c.23.16.2 94142 1ja1A 622 4.89e+00 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1jalA 363 4.89e+00 c.37.1.8,d.15.10.2 84138,84139 1v6sA 390 4.90e+00 c.86.1.1 100424 1h5qA 265 4.91e+00 1cydA c.2.1.2 60643 1snyA 267 4.93e+00 c.2.1.2 105833 1nq6A 302 4.96e+00 c.1.8.3 92046 1eny 268 4.97e+00 1eny c.2.1.2 29910 1fc4A 401 5.01e+00 1bs0A c.67.1.4 59760 1jpzA 473 5.01e+00 a.104.1.1 67069 1ye8A 178 5.02e+00 1fg7A 356 5.19e+00 1gewA c.67.1.1 59819 1eg5A 384 5.20e+00 1ecxA c.67.1.3 34429 1qw9A 502 5.22e+00 b.71.1.2,c.1.8.3 96466,96467 1ajsA 412 5.26e+00 1ajsA c.67.1.1 34276 1ekqA 272 5.26e+00 1c3qA c.72.1.2 34941 1reqA 727 5.32e+00 1reqA c.1.19.1,c.23.6.1 29620,31247 2gk4A 232 5.33e+00 2db3A 434 5.33e+00 1im5A 180 5.34e+00 c.33.1.3 66211 1o1yA 239 5.37e+00 c.23.16.1 86554 1nf9A 207 5.43e+00 c.33.1.3 85631 1a7tA 232 5.44e+00 1a7tA d.157.1.1 42041 1usgA 346 5.48e+00 c.93.1.1 99864 1hyhA 309 5.53e+00 1hyhA c.2.1.5,d.162.1.1 30150,42117 1fecA 490 5.58e+00 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1i0dA 332 5.60e+00 1pscA c.1.9.3 61487 1e7wA 291 5.69e+00 c.2.1.2 59373 1cipA 353 5.75e+00 1cipA a.66.1.1,c.37.1.8 18210,32093 1m7yA 435 5.85e+00 c.67.1.4 78761 1nriA 306 5.89e+00 c.80.1.3 86123 1nvmB 312 5.91e+00 c.2.1.3,d.81.1.1 86251,86252 1cvl 319 5.91e+00 1cvl c.69.1.18 34786 1bif 469 5.96e+00 1bif c.37.1.7,c.60.1.4 31961,34003 1ubkS 267 5.97e+00 e.19.1.1 88423 1hd2A 161 6.03e+00 c.47.1.10 60962 1gtzA 156 6.08e+00 c.23.13.1 70539 1k0fA 277 6.10e+00 c.92.2.2 71974 1rloA 271 6.11e+00 1kewA 361 6.19e+00 c.2.1.2 68544 1puiA 210 6.30e+00 c.37.1.8 88292 1gcyA 527 6.39e+00 1jdc b.71.1.1,c.1.8.1 27788,28775 1sb8A 352 6.43e+00 c.2.1.2 105410 1q7zA 566 6.46e+00 c.1.21.2,c.1.26.1 96090,96091 1uozA 315 6.48e+00 1qf5A 431 6.52e+00 1adeA c.37.1.10 32212 1h09A 338 6.55e+00 b.109.1.1,c.1.8.8 83420,83421 1mv8A 436 6.66e+00 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1hyeA 313 6.84e+00 2cmd c.2.1.5,d.162.1.1 61400,61401 1rp0A 284 6.89e+00 1lc0A 294 6.92e+00 c.2.1.3,d.81.1.4 73823,73824 1p9oA 313 6.94e+00 c.72.3.1 94397 1g5bA 221 6.95e+00 1g5bA d.159.1.3 60261 1rd5A 262 6.95e+00 1ehiA 377 6.97e+00 1iow c.30.1.2,d.142.1.1 31716,41484 1i1qA 520 7.01e+00 1qdlA d.161.1.1 61543 1heiA 451 7.07e+00 1heiA c.37.1.14,c.37.1.14 32463,32464 1gc0A 398 7.08e+00 c.67.1.3 70168 1ui0A 205 7.16e+00 c.18.1.2 99411 1oc7A 364 7.22e+00 c.6.1.1 86794 1woqA 267 7.23e+00 c.55.1.10,c.55.1.10 109462,109463 1ad1A 266 7.30e+00 1aj2 c.1.21.1 29668 1l7mA 211 7.33e+00 c.108.1.4 73664 1pt6A 213 7.41e+00 c.62.1.1 95091 1t7lA 766 7.43e+00 1pj5A 830 7.48e+00 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