CreatePredAlphaCost pred_alpha2k alpha11 T0296.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0296.t04.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha06 alpha11 T0296.t06.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 5 \
	n_ca_c	5 bad_peptide 10 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 50  \
	pred_alpha2k 2 \
	pred_alpha04 2 \
	pred_alpha06 2 \
	constraints 20 \
	hbond_geom 5 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 50 \
	hbond_geom_beta_pair 100 \
	missing_atoms 1 \
	maybe_metal 0.5 \
	maybe_ssbond 1

// remove maybe_ssbond weight if protein known to be in reducing environment.
// remove maybe_metal weight if protein known to have disulfides or
//	known not to bind metal ions.

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

include T0296.dssp-ehl2.constraints
include rr.0.1.constraints
# include rr.t2k.constraints
Constraint R396.CB M419.CB -10. 7.0 14.0 0.474162456359
Constraint V395.CB A416.CB -10. 7.0 14.0 0.462246034514
Constraint I397.CB I407.CB -10. 7.0 14.0 0.454054240861
Constraint I266.CB A326.CB -10. 7.0 14.0 0.439780149972
Constraint R396.CB V418.CB -10. 7.0 14.0 0.396891914063
Constraint I23.CB A383.CB -10. 7.0 14.0 0.382244694704
Constraint I397.CB A416.CB -10. 7.0 14.0 0.378933467153
Constraint A326.CB A384.CB -10. 7.0 14.0 0.378749985401
Constraint I379.CB V395.CB -10. 7.0 14.0 0.372940221429 bonus
Constraint I397.CB M419.CB -10. 7.0 14.0 0.370291752622 bonus
Constraint V395.CB M419.CB -10. 7.0 14.0 0.370264946678 bonus
Constraint I398.CB A416.CB -10. 7.0 14.0 0.352364803867 bonus
Constraint I397.CB V418.CB -10. 7.0 14.0 0.347307401174 bonus
Constraint I364.CB V395.CB -10. 7.0 14.0 0.338022309753 bonus
Constraint I398.CB M419.CB -10. 7.0 14.0 0.336909932476 bonus
Constraint I385.CB V395.CB -10. 7.0 14.0 0.331991217021 bonus
Constraint I398.CB V418.CB -10. 7.0 14.0 0.322188403452 bonus
Constraint V395.CB V418.CB -10. 7.0 14.0 0.320323318335 bonus
Constraint V184.CB M195.CB -10. 7.0 14.0 0.306263552795 bonus
Constraint V184.CB L269.CB -10. 7.0 14.0 0.305179080745 bonus
Constraint I20.CB L29.CB -10. 7.0 14.0 0.303300434466 bonus
Constraint L271.CB V281.CB -10. 7.0 14.0 0.298067879415 bonus
Constraint C144.CB F185.CB -10. 7.0 14.0 0.287318610425 bonus
Constraint V6.CB I20.CB -10. 7.0 14.0 0.285075671855 bonus
Constraint T24.CB I33.CB -10. 7.0 14.0 0.275895475317 bonus
Constraint T246.CB I266.CB -10. 7.0 14.0 0.272065476793 bonus
Constraint L269.CB L302.CB -10. 7.0 14.0 0.269561594714 bonus
Constraint I13.CB I23.CB -10. 7.0 14.0 0.268152581012 bonus
Constraint N187.CB A198.CB -10. 7.0 14.0 0.267689904533 bonus
Constraint F185.CB M195.CB -10. 7.0 14.0 0.267498586832 bonus
Constraint N187.CB A196.CB -10. 7.0 14.0 0.267013785176 bonus
Constraint L223.CB V238.CB -10. 7.0 14.0 0.266913245772 bonus
Constraint A326.CB M336.CB -10. 7.0 14.0 0.266332459895 bonus
Constraint D362.CB R396.CB -10. 7.0 14.0 0.26605264149 bonus
Constraint K391.CB M419.CB -10. 7.0 14.0 0.265955681159 bonus
Constraint I23.CB C32.CB -10. 7.0 14.0 0.265786163264 bonus
Constraint V93.CB A102.CB -10. 7.0 14.0 0.265152992779 bonus
Constraint G253.CA V267.CB -10. 7.0 14.0 0.264499974709 bonus
Constraint V93.CB V108.CB -10. 7.0 14.0 0.264348026808 bonus
Constraint A303.CB G312.CA -10. 7.0 14.0 0.26429759442 bonus
Constraint V267.CB A384.CB -10. 7.0 14.0 0.264230242781 bonus
Constraint C144.CB A180.CB -10. 7.0 14.0 0.263583732116 bonus
Constraint I44.CB I62.CB -10. 7.0 14.0 0.262558490493 bonus
Constraint R396.CB G414.CA -10. 7.0 14.0 0.262537016057 bonus
Constraint L302.CB V314.CB -10. 7.0 14.0 0.262506431255 bonus
Constraint C357.CB R396.CB -10. 7.0 14.0 0.262504804403 bonus
Constraint L285.CB L302.CB -10. 7.0 14.0 0.262408169442 bonus
Constraint A186.CB A198.CB -10. 7.0 14.0 0.262231168032 bonus
Constraint M363.CB R396.CB -10. 7.0 14.0 0.262054491993 bonus
Constraint I13.CB M25.CB -10. 7.0 14.0 0.261981283689 bonus
Constraint K181.CB T393.CB -10. 7.0 14.0 0.261699187692 bonus
Constraint F327.CB M336.CB -10. 7.0 14.0 0.261603528841 bonus
Constraint L302.CB G313.CA -10. 7.0 14.0 0.261440518352 bonus
Constraint R396.CB G411.CA -10. 7.0 14.0 0.261341605799 bonus
Constraint I168.CB L182.CB -10. 7.0 14.0 0.261164279019 bonus
Constraint V71.CB D109.CB -10. 7.0 14.0 0.261033480183 bonus
Constraint T393.CB A416.CB -10. 7.0 14.0 0.261017537041 bonus
Constraint A186.CB M195.CB -10. 7.0 14.0 0.260651820892 bonus
Constraint F185.CB E204.CB -10. 7.0 14.0 0.260139362766 bonus
Constraint V309.CB M336.CB -10. 7.0 14.0 0.260088605008 bonus
Constraint F185.CB G197.CA -10. 7.0 14.0 0.260074288718 bonus
Constraint L350.CB M378.CB -10. 7.0 14.0 0.259819849191 bonus
Constraint K391.CB D405.CB -10. 7.0 14.0 0.25955922763 bonus
Constraint L223.CB V234.CB -10. 7.0 14.0 0.259454783783 bonus
Constraint L305.CB M336.CB -10. 7.0 14.0 0.259383853071 bonus
Constraint M378.CB V395.CB -10. 7.0 14.0 0.259364330856 bonus
Constraint I168.CB A186.CB -10. 7.0 14.0 0.259265092933 bonus
Constraint V284.CB L302.CB -10. 7.0 14.0 0.259224421654 bonus
Constraint V183.CB A394.CB -10. 7.0 14.0 0.259212708325 bonus
Constraint V6.CB I23.CB -10. 7.0 14.0 0.258896123082 bonus
Constraint M25.CB V77.CB -10. 7.0 14.0 0.258887338086 bonus
Constraint I328.CB V395.CB -10. 7.0 14.0 0.258831049035 bonus
Constraint L285.CB L305.CB -10. 7.0 14.0 0.258612400234 bonus
Constraint G321.CA S331.CB -10. 7.0 14.0 0.258563594698 bonus
Constraint I10.CB I20.CB -10. 7.0 14.0 0.258526502491 bonus
Constraint F185.CB A198.CB -10. 7.0 14.0 0.258217075394 bonus
Constraint V77.CB G112.CA -10. 7.0 14.0 0.258180959297 bonus
Constraint V267.CB L302.CB -10. 7.0 14.0 0.258167293747 bonus
Constraint R396.CB I436.CB -10. 7.0 14.0 0.258124670246 bonus
Constraint I149.CB M158.CB -10. 7.0 14.0 0.257862421833 bonus
Constraint V71.CB A180.CB -10. 7.0 14.0 0.257838344435 bonus
Constraint A186.CB H200.CB -10. 7.0 14.0 0.257779452422 bonus
Constraint V6.CB F18.CB -10. 7.0 14.0 0.257521759193 bonus
Constraint V267.CB V284.CB -10. 7.0 14.0 0.257318402793 bonus
Constraint L361.CB V395.CB -10. 7.0 14.0 0.257263089853 bonus
Constraint L285.CB V309.CB -10. 7.0 14.0 0.257220466351 bonus
Constraint A198.CB I266.CB -10. 7.0 14.0 0.257216236538 bonus
Constraint M25.CB I44.CB -10. 7.0 14.0 0.257214284317 bonus
Constraint L305.CB V314.CB -10. 7.0 14.0 0.256849218909 bonus
Constraint T393.CB F409.CB -10. 7.0 14.0 0.256829371324 bonus
Constraint I328.CB I379.CB -10. 7.0 14.0 0.256747052654 bonus
Constraint V267.CB V281.CB -10. 7.0 14.0 0.256718745443 bonus
Constraint R21.CB I33.CB -10. 7.0 14.0 0.256561591617 bonus
Constraint I130.CB V147.CB -10. 7.0 14.0 0.256269409143 bonus
Constraint I398.CB V421.CB -10. 7.0 14.0 0.256199779912 bonus
Constraint G360.CA R396.CB -10. 7.0 14.0 0.256005208509 bonus
Constraint K391.CB V418.CB -10. 7.0 14.0 0.25592516743 bonus
Constraint I364.CB M378.CB -10. 7.0 14.0 0.255713026034 bonus
Constraint A256.CB V267.CB -10. 7.0 14.0 0.255702288816 bonus
Constraint I23.CB I70.CB -10. 7.0 14.0 0.255633635696 bonus
Constraint T24.CB R74.CB -10. 7.0 14.0 0.255440365774 bonus
Constraint N187.CB N210.CB -10. 7.0 14.0 0.255422795781 bonus
Constraint G265.CA T393.CB -10. 7.0 14.0 0.255109789611 bonus
Constraint N187.CB H200.CB -10. 7.0 14.0 0.25506781685 bonus
Constraint V395.CB V421.CB -10. 7.0 14.0 0.254329226407 bonus
Constraint V281.CB L302.CB -10. 7.0 14.0 0.254314259376 bonus
Constraint I209.CB V219.CB -10. 7.0 14.0 0.25425081218 bonus
Constraint F185.CB N210.CB -10. 7.0 14.0 0.253989865248 bonus
Constraint T24.CB R396.CB -10. 7.0 14.0 0.253899086951 bonus
Constraint A180.CB V189.CB -10. 7.0 14.0 0.253694754441 bonus
Constraint I356.CB V395.CB -10. 7.0 14.0 0.253547687093 bonus
Constraint A272.CB T298.CB -10. 7.0 14.0 0.253190755941 bonus
Constraint L55.CB I70.CB -10. 7.0 14.0 0.252614525248 bonus
Constraint I397.CB L413.CB -10. 7.0 14.0 0.252485353263 bonus
Constraint I397.CB V421.CB -10. 7.0 14.0 0.252107598415 bonus
Constraint N306.CB V340.CB -10. 7.0 14.0 0.252082870277 bonus
Constraint V267.CB L285.CB -10. 7.0 14.0 0.252076037502 bonus
Constraint F185.CB V207.CB -10. 7.0 14.0 0.251861618515 bonus
Constraint V309.CB I328.CB -10. 7.0 14.0 0.25167843507 bonus
Constraint K391.CB G434.CA -10. 7.0 14.0 0.251067064391 bonus
Constraint M158.CB I167.CB -10. 7.0 14.0 0.250811323383 bonus
Constraint I356.CB A365.CB -10. 7.0 14.0 0.250800586165 bonus
Constraint F409.CB M419.CB -10. 7.0 14.0 0.250633345862 bonus
Constraint I328.CB V340.CB -10. 7.0 14.0 0.250517188687 bonus
Constraint P399.CB G411.CA -10. 7.0 14.0 0.250497341102 bonus
Constraint L302.CB M336.CB -10. 7.0 14.0 0.250352225976 bonus
Constraint I27.CB L55.CB -10. 7.0 14.0 0.25029040563 bonus