# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1z41A 338 3.48e-01 1yarA 233 6.82e-01 1o9rA 162 1.03e+00 a.25.1.1 86706 1ceo 343 1.29e+00 1ceo c.1.8.3 28808 2chnA 716 1.45e+00 1u9yA 284 1.47e+00 1p0kA 349 2.07e+00 c.1.4.1 87648 2g8lA 299 2.12e+00 1uqrA 154 2.19e+00 c.23.13.1 99779 1i60A 278 2.47e+00 c.1.15.4 71118 1vbuA 328 2.63e+00 1ufoA 238 2.68e+00 c.69.1.27 99344 1zhvA 134 2.98e+00 1thfD 253 3.42e+00 1thfD c.1.2.1 28535 1xyzA 347 3.43e+00 1taxA c.1.8.3 28804 1zy9A 564 3.65e+00 1uf5A 303 3.86e+00 d.160.1.2 107808 1w0mA 226 3.88e+00 c.1.1.1 109027 1ep3A 311 5.09e+00 2dorA c.1.4.1 28597 2boqA 331 5.66e+00 1womA 271 6.06e+00 1vr6A 350 6.51e+00 1sz7A 200 6.58e+00 1fzqA 181 7.11e+00 1hurA c.37.1.8 32060 2gp5A 349 8.37e+00 2a0b 125 8.37e+00 2a0b a.24.10.1 16630 1fmjA 351 8.85e+00 c.37.1.5 59879 1nswA 105 9.14e+00 c.47.1.1 92097 1ra6A 461 9.86e+00 e.8.1.4 104879 1vcoA 550 1.00e+01 c.23.16.1,c.37.1.10 108508,108509 1khtA 192 1.03e+01 c.37.1.1 84401 1uxy 340 1.06e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1vplA 256 1.07e+01 1e8gA 560 1.13e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 2b4lA 268 1.16e+01 1o60A 292 1.26e+01 c.1.10.4 92532 1j6oA 268 1.27e+01 c.1.9.12 77088 1zzmA 259 1.31e+01 1sazA 381 1.31e+01 1xdpA 687 1.31e+01 1xffA 240 1.33e+01 d.153.1.1 109580 1fl2A 310 1.36e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1ki9A 192 1.39e+01 c.37.1.1 84404 1k32A 1045 1.42e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2b7kA 200 1.44e+01 1nf1A 333 1.47e+01 1nf1A a.116.1.2 19110 1dpsA 167 1.49e+01 1dpsA a.25.1.1 16716 1pmi 440 1.61e+01 1pmi b.82.1.3 28114 1x7yB 342 1.63e+01 1dkuA 317 1.72e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1vdkA 466 1.76e+01 a.127.1.1 100561 1pq4A 291 1.78e+01 c.92.2.2 94995 1xfiA 367 1.78e+01 e.50.1.1 109584 1ny1A 240 1.87e+01 c.6.2.3 86395 1wpoA 256 1.93e+01 1lay b.57.1.1 27012 2cbiA 594 1.94e+01 1vdwA 254 1.96e+01 e.7.1.1 100569 1hnjA 317 1.99e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1jetA 517 2.00e+01 1jevA c.94.1.1 35718 2f5xA 312 2.01e+01 1j8mF 297 2.02e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1gtzA 156 2.05e+01 c.23.13.1 70539 1r6xA 395 2.09e+01 b.122.1.3,c.26.1.5 97167,97168 1xkrA 206 2.13e+01 1vixA 420 2.21e+01 c.56.5.4,d.58.19.1 100777,100778 1c93A 265 2.24e+01 2ebn c.1.8.5 28998 1edt 271 2.25e+01 2ebn c.1.8.5 28993 1x38A 602 2.29e+01 1y5eA 169 2.31e+01 1u2zA 433 2.32e+01 c.66.1.31 107626 1f9vA 347 2.33e+01 1bg2 c.37.1.9 59745 1a4iA 301 2.44e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1dxy 333 2.56e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1qksA 567 2.57e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1vqoB 338 2.61e+01 1xnaA 183 2.62e+01 1xnaA b.18.1.8 23773 1pa7A 130 2.66e+01 a.40.1.1 94410 1othA 321 2.70e+01 1othA c.78.1.1,c.78.1.1 35260,35261 2bfdB 345 2.74e+01 2gnoA 305 2.83e+01 1uz5A 402 2.84e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1u2kA 309 2.90e+01 1ur4A 399 2.96e+01 1up8A 598 2.98e+01 a.111.1.2 99710 1k0wA 231 3.01e+01 c.74.1.1 77220 1iuqA 367 3.01e+01 c.112.1.1 90703 1gefA 123 3.05e+01 1gefA c.52.1.18 60465 1j79A 347 3.08e+01 1j79A c.1.9.4 62675 1klxA 138 3.15e+01 a.118.18.1 77440 1mw9X 592 3.21e+01 e.10.1.1 91480 2sli 679 3.23e+01 2sli b.29.1.9,b.68.1.1 24274,27611 2f51A 118 3.23e+01 1m2oA 768 3.23e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1j96A 323 3.29e+01 c.1.7.1 71616 1xrtA 467 3.37e+01 1pdo 135 3.37e+01 1pdo c.54.1.1 33376 1vqoO 116 3.39e+01 1zu4A 320 3.47e+01 1oxxK 353 3.54e+01 b.40.6.3,c.37.1.12 93715,93716 1uptA 171 3.55e+01 c.37.1.8 99767 2b8nA 429 3.58e+01 1izcA 339 3.63e+01 c.1.12.5 83838 2aotA 292 3.73e+01 2tpsA 227 3.89e+01 2tpsA c.1.3.1 28591 1pj5A 830 3.94e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1k47A 337 4.00e+01 d.14.1.5,d.58.26.4 72040,72041 1ykjA 394 4.02e+01 1zx0A 236 4.02e+01 2akoA 251 4.03e+01 1puiA 210 4.06e+01 c.37.1.8 88292 1wosA 364 4.10e+01 b.44.2.1,d.250.1.1 109468,109469 2fmpA 335 4.10e+01 1h6kA 757 4.17e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1w3iA 293 4.17e+01 c.1.10.1 109152 1uwkA 557 4.20e+01 e.51.1.1 108065 1h05A 146 4.24e+01 c.23.13.1 76433 1v02A 565 4.30e+01 c.1.8.4 108194 1k7cA 233 4.40e+01 c.23.10.4 68267 1zkdA 387 4.45e+01 1wf3A 301 4.45e+01 1ib2A 349 4.46e+01 1ib2A a.118.1.8 62141 1sviA 195 4.48e+01 c.37.1.8 106048 1sflA 238 4.55e+01 1qtwA 285 4.55e+01 1qumA c.1.15.1 29392 1c0pA 363 4.60e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1hyeA 313 4.64e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 2csbA 519 4.67e+01 1fs5A 266 4.70e+01 c.124.1.1 65044 1zowA 313 4.73e+01 1z3qA 200 4.75e+01 2fuvA 549 4.81e+01 1uf3A 228 4.89e+01 d.159.1.6 99317 2gx9A 129 4.93e+01 1o58A 303 4.97e+01 c.79.1.1 92491 1hrhA 136 5.02e+01 1rthA c.55.3.1 33577 1x1nA 524 5.09e+01 1a8s 273 5.10e+01 1brt c.69.1.12 34710 1o6zA 303 5.13e+01 c.2.1.5,d.162.1.1 81107,81108 1jb9A 316 5.21e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1yb2A 275 5.23e+01 2frnA 278 5.25e+01 1n0wA 243 5.38e+01 c.37.1.11 79772 1mdl 359 5.40e+01 2mnr c.1.11.2,d.54.1.1 29247,38891 1nc5A 373 5.40e+01 a.102.1.6 85548 1g0cA 364 5.40e+01 7a3hA c.1.8.3 60165 1o3yA 166 5.42e+01 c.37.1.8 86618 2c1lA 358 5.47e+01 1xszA 356 5.49e+01 1hf8A 289 5.56e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1rk6A 496 5.56e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1jpzA 473 5.63e+01 a.104.1.1 67069 1k0iA 394 5.66e+01 c.3.1.2,d.16.1.2 67942,67943 1bueA 265 5.70e+01 1btl e.3.1.1 42727 1vzwA 244 5.93e+01 1pvgA 418 5.97e+01 d.14.1.3,d.122.1.2 95161,95162 2bjvA 265 5.99e+01 2a9gA 418 6.06e+01 2g8mA 264 6.10e+01 1zbqA 327 6.19e+01 1wdpA 495 6.25e+01 1v4aA 440 6.26e+01 a.24.16.4,d.218.1.9 108350,108351 1eemA 241 6.28e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1hqsA 423 6.36e+01 1iso c.77.1.1 61154 1s2wA 295 6.47e+01 c.1.12.7 98407 1hzdA 272 6.48e+01 c.14.1.3 65969 1lqaA 346 6.66e+01 c.1.7.1 84674 1e4yA 214 6.66e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1i36A 264 6.67e+01 a.100.1.8,c.2.1.6 71108,71109 2g0wA 296 6.68e+01 1y0kA 209 6.86e+01 2c78A 405 6.86e+01 1zp4A 304 6.87e+01 1qmgA 524 6.89e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 7a3hA 303 6.97e+01 7a3hA c.1.8.3 28817 2f02A 323 7.01e+01 1zgdA 312 7.03e+01 1w8kA 447 7.04e+01 1hziA 129 7.04e+01 1rcb a.26.1.2 61449 1rh5A 436 7.22e+01 f.41.1.1 97464 1xg7A 250 7.26e+01 1lt8A 406 7.29e+01 c.1.26.1 78186 2fsjA 346 7.29e+01 2bsxA 253 7.33e+01 2f9dA 125 7.34e+01 1km4A 247 7.37e+01 c.1.2.3 72740 1tz9A 367 7.40e+01 c.1.15.6 107466 1gq6A 313 7.41e+01 c.42.1.1 70341 1gkpA 458 7.41e+01 b.92.1.3,c.1.9.6 70231,70232 1sb8A 352 7.43e+01 c.2.1.2 105410 1mldA 314 7.60e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1mr3F 181 7.66e+01 c.37.1.8 79422 1qo2A 241 7.78e+01 1qo2A c.1.2.1 28533 1mv8A 436 7.81e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1vhcA 224 7.87e+01 c.1.10.1 100661 1lehA 364 7.91e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1lvaA 258 7.99e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1cy5A 97 8.06e+01 1cy5A a.77.1.3 18430 1g8pA 350 8.06e+01 1g8pA c.37.1.20 60376 1fukA 165 8.08e+01 1fukA c.37.1.19 32409 1vb3A 428 8.10e+01 2gdnA 267 8.20e+01 1tzjA 338 8.25e+01 1v5vA 401 8.27e+01 1z82A 335 8.27e+01 1y8aA 332 8.31e+01 1r89A 437 8.38e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1fehA 574 8.43e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1uxjA 309 8.44e+01 c.2.1.5,d.162.1.1 108112,108113 1xr4A 509 8.50e+01 1f89A 291 8.53e+01 d.160.1.1 64988 1n7kA 234 8.54e+01 c.1.10.1 85374 1wzuA 300 8.57e+01 2ffcA 353 8.68e+01 1gwmA 153 8.73e+01 b.18.1.19 83348 2c1iA 431 8.81e+01 1t3gA 159 8.87e+01 2fymA 431 8.87e+01 2c0nA 203 8.89e+01