# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yarA 233 1.09e+00 1to3A 304 1.11e+00 c.1.10.1 107161 1u9yA 284 1.15e+00 1ps9A 671 1.25e+00 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1z41A 338 1.59e+00 1o9rA 162 1.62e+00 a.25.1.1 86706 2boqA 331 2.25e+00 2chnA 716 3.90e+00 1ceo 343 4.71e+00 1ceo c.1.8.3 28808 1ep3A 311 4.76e+00 2dorA c.1.4.1 28597 1zhvA 134 5.30e+00 2g8lA 299 5.94e+00 1w0mA 226 6.06e+00 c.1.1.1 109027 1p0kA 349 6.56e+00 c.1.4.1 87648 1ufoA 238 8.44e+00 c.69.1.27 99344 1ra6A 461 8.65e+00 e.8.1.4 104879 1zy9A 564 9.28e+00 1j96A 323 9.42e+00 c.1.7.1 71616 1erzA 303 1.02e+01 1erzA d.160.1.2 59498 1uqrA 154 1.10e+01 c.23.13.1 99779 1i60A 278 1.14e+01 c.1.15.4 71118 1xyzA 347 1.19e+01 1taxA c.1.8.3 28804 2a0b 125 1.22e+01 2a0b a.24.10.1 16630 1uxy 340 1.24e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1fzqA 181 1.29e+01 1hurA c.37.1.8 32060 1f9vA 347 1.29e+01 1bg2 c.37.1.9 59745 1wosA 364 1.29e+01 b.44.2.1,d.250.1.1 109468,109469 1pbgA 468 1.36e+01 1e70M c.1.8.4 28946 1sz7A 200 1.38e+01 1v1rB 342 1.41e+01 c.36.1.7,c.48.1.2 108273,108274 1wc9A 169 1.42e+01 2gp5A 349 1.43e+01 1uf5A 303 1.47e+01 d.160.1.2 107808 1sjqA 105 1.48e+01 d.58.7.1 105660 1vbuA 328 1.49e+01 1thfD 253 1.61e+01 1thfD c.1.2.1 28535 1e8gA 560 1.65e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1w1kA 560 1.66e+01 d.58.32.1,d.145.1.1 109059,109060 1j6oA 268 1.84e+01 c.1.9.12 77088 1sazA 381 1.84e+01 2b7kA 200 1.86e+01 1hnjA 317 1.89e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1jb9A 316 2.03e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1dpsA 167 2.11e+01 1dpsA a.25.1.1 16716 1xdpA 687 2.16e+01 1fmjA 351 2.16e+01 c.37.1.5 59879 1a4iA 301 2.18e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1ur4A 399 2.23e+01 1j8yF 297 2.23e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1k1xA 659 2.25e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1vr6A 350 2.28e+01 1xrtA 467 2.33e+01 1qksA 567 2.38e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 2c78A 405 2.41e+01 1k32A 1045 2.43e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2b4lA 268 2.45e+01 1x38A 602 2.45e+01 1s72B 338 2.49e+01 b.43.3.2 105320 1o60A 292 2.50e+01 c.1.10.4 92532 1zzmA 259 2.51e+01 1dkuA 317 2.53e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1jj2B 337 2.56e+01 1ffkB b.43.3.2 63086 1qmgA 524 2.60e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1hyeA 313 2.64e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 2ad9A 119 2.69e+01 1z63A 500 2.76e+01 1vqoB 338 2.82e+01 1t9kA 347 2.84e+01 c.124.1.5 106721 1m2oA 768 2.89e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1xkrA 206 2.96e+01 1klxA 138 2.99e+01 a.118.18.1 77440 1xjjA 644 3.03e+01 1j8mF 297 3.11e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1nswA 105 3.24e+01 c.47.1.1 92097 1othA 321 3.25e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1vqoO 116 3.25e+01 1ex1A 605 3.27e+01 1ex1A c.1.8.7,c.23.11.1 29013,31347 1vcoA 550 3.30e+01 c.23.16.1,c.37.1.10 108508,108509 1pa7A 130 3.31e+01 a.40.1.1 94410 1womA 271 3.33e+01 1o6zA 303 3.38e+01 c.2.1.5,d.162.1.1 81107,81108 1fnoA 417 3.48e+01 d.58.19.1,c.56.5.4 70145,75841 1s72O 116 3.48e+01 c.12.1.1 105334 1pmi 440 3.49e+01 1pmi b.82.1.3 28114 1ki9A 192 3.56e+01 c.37.1.1 84404 1iuqA 367 3.58e+01 c.112.1.1 90703 2liv 344 3.62e+01 2liv c.93.1.1 35708 1mw9X 592 3.63e+01 e.10.1.1 91480 1dtdA 303 3.64e+01 1aye c.56.5.1 33823 1bueA 265 3.74e+01 1btl e.3.1.1 42727 1khtA 192 3.75e+01 c.37.1.1 84401 1vh7A 265 3.79e+01 c.1.2.1 100646 1vpgA 192 3.94e+01 2cbiA 594 3.95e+01 1xffA 240 3.95e+01 d.153.1.1 109580 1pztA 286 3.97e+01 c.68.1.2 95470 1j0aA 325 3.99e+01 c.79.1.1 83871 1wpoA 256 4.00e+01 1lay b.57.1.1 27012 1sfjA 238 4.01e+01 2sli 679 4.08e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1k30A 368 4.10e+01 c.112.1.1 68067 1vixA 420 4.10e+01 c.56.5.4,d.58.19.1 100777,100778 1pq4A 291 4.10e+01 c.92.2.2 94995 1vdwA 254 4.14e+01 e.7.1.1 100569 1y5eA 169 4.15e+01 2akoA 251 4.23e+01 1f89A 291 4.25e+01 d.160.1.1 64988 1qi9A 556 4.25e+01 1qhbA a.111.1.2 19053 1di0A 158 4.27e+01 1di0A c.16.1.1 30957 2a19B 284 4.30e+01 1u0tA 307 4.40e+01 e.52.1.1 107567 1mdl 359 4.42e+01 2mnr c.1.11.2,d.54.1.1 29247,38891 1zx0A 236 4.44e+01 1gdoA 240 4.47e+01 1gdoA 1y8aA 332 4.52e+01 2f5xA 312 4.59e+01 1t13A 158 4.67e+01 1x7yB 342 4.71e+01 1xfiA 367 4.74e+01 e.50.1.1 109584 1ib2A 349 4.78e+01 1ib2A a.118.1.8 62141 1bpyA 335 4.82e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 1gkpA 458 4.83e+01 b.92.1.3,c.1.9.6 70231,70232 1ny1A 240 5.04e+01 c.6.2.3 86395 2b6hA 192 5.07e+01 2mnr 357 5.10e+01 2mnr c.1.11.2,d.54.1.1 29245,38889 1zkdA 387 5.19e+01 1km4A 247 5.30e+01 c.1.2.3 72740 1vdkA 466 5.30e+01 a.127.1.1 100561 1ubeA 349 5.31e+01 c.37.1.11,d.48.1.1 88412,88413 1b5tA 275 5.38e+01 1b5tA c.1.23.1 29676 1uhvA 500 5.52e+01 b.71.1.2,c.1.8.3 99402,99403 1gq6A 313 5.54e+01 c.42.1.1 70341 1fehA 574 5.56e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1tzjA 338 5.56e+01 1bx1A 314 5.59e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1hrhA 136 5.66e+01 1rthA c.55.3.1 33577 1vplA 256 5.82e+01 1icpA 376 5.85e+01 1oyc c.1.4.1 62270 1rzmA 338 5.86e+01 c.1.10.4 105137 1f2dA 341 5.89e+01 1f2dA c.79.1.1 35298 1izcA 339 6.00e+01 c.1.12.5 83838 1q45A 391 6.00e+01 c.1.4.1 95780 1nbaA 264 6.05e+01 1nbaA c.33.1.3 31753 1h6kA 757 6.11e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1d0iA 156 6.16e+01 2dhqA c.23.13.1 31383 1ezfA 340 6.36e+01 1ezfA a.128.1.2 19440 1fnc 314 6.36e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 2g8mA 264 6.38e+01 1zowA 313 6.43e+01 1ldg 316 6.54e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1r5zA 323 6.56e+01 f.40.1.1 97135 1x1nA 524 6.60e+01 1j79A 347 6.61e+01 1j79A c.1.9.4 62675 1oxsC 353 6.61e+01 b.40.6.3,c.37.1.12 87519,87520 1olsB 342 6.62e+01 c.36.1.7,c.48.1.2 93332,93333 1sflA 238 6.62e+01 1qvbA 481 6.64e+01 1qvbA c.1.8.4 28983 1pdo 135 6.71e+01 1pdo c.54.1.1 33376 1ynpA 317 6.71e+01 1g0cA 364 6.72e+01 7a3hA c.1.8.3 60165 2bfdB 345 6.81e+01 1n0wA 243 6.90e+01 c.37.1.11 79772 1h05A 146 6.92e+01 c.23.13.1 76433 1jetA 517 6.96e+01 1jevA c.94.1.1 35718 1mr3F 181 6.99e+01 c.37.1.8 79422 1k7cA 233 7.07e+01 c.23.10.4 68267 1r4aA 165 7.16e+01 c.37.1.8 96986 1z15A 344 7.25e+01 1u0fA 564 7.31e+01 1up8A 598 7.38e+01 a.111.1.2 99710 1fnd 314 7.46e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1z3qA 200 7.50e+01 1xp3A 307 7.51e+01 1xg7A 250 7.55e+01 2bijA 305 7.57e+01 2fuvA 549 7.62e+01 1w3iA 293 7.63e+01 c.1.10.1 109152 1oxxK 353 7.64e+01 b.40.6.3,c.37.1.12 93715,93716 1nc5A 373 7.68e+01 a.102.1.6 85548 1dtwB 342 7.70e+01 1qs0B c.36.1.7,c.48.1.2 31828,33102 1o7jA 327 7.71e+01 c.88.1.1 81140 1nmmB 286 7.75e+01 c.68.1.2 80662 1nf1A 333 7.78e+01 1nf1A a.116.1.2 19110 1lqaA 346 7.78e+01 c.1.7.1 84674 1drw 273 7.97e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1ua4A 455 8.05e+01 c.72.1.3 99128 1dvjA 246 8.05e+01 1dvjA c.1.2.3 28546 1rztA 331 8.14e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1o3yA 166 8.18e+01 c.37.1.8 86618 1rk6A 496 8.18e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 2cxnA 557 8.21e+01 1eemA 241 8.27e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 2fbmA 291 8.27e+01 1snyA 267 8.33e+01 c.2.1.2 105833 1k0wA 231 8.39e+01 c.74.1.1 77220 1e9mA 106 8.43e+01 1ayfA d.15.4.1 59397 1tjoA 182 8.46e+01 2bsxA 253 8.47e+01 1x1zA 252 8.47e+01 1hzdA 272 8.50e+01 c.14.1.3 65969 1frb 315 8.71e+01 1frb c.1.7.1 28665 1uxjA 309 8.72e+01 c.2.1.5,d.162.1.1 108112,108113 1edt 271 8.77e+01 2ebn c.1.8.5 28993 1xjeA 644 8.79e+01 1xclA 235 8.81e+01 1e5rA 290 8.83e+01 1e5rA b.82.2.4 59276 1bu7A 455 8.89e+01 1bu7A a.104.1.1 18937 1deoA 233 8.91e+01 1deoA c.23.10.4 31345 1v9mA 323 8.95e+01 f.40.1.1 100543 1pj5A 830 8.96e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745