# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i60A 278 1.41e-01 c.1.15.4 71118 1edt 271 1.86e-01 2ebn c.1.8.5 28993 1a4iA 301 2.95e-01 1a4iA c.2.1.7,c.58.1.2 30278,33926 2bkxA 242 3.17e-01 1c93A 265 3.27e-01 2ebn c.1.8.5 28998 1gtzA 156 5.06e-01 c.23.13.1 70539 1gudA 288 5.99e-01 c.93.1.1 83326 1ydyA 356 8.35e-01 1vdkA 466 1.04e+00 a.127.1.1 100561 1n7oA 721 1.09e+00 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1uuyA 167 1.15e+00 c.57.1.1 108059 1f6fA 199 1.20e+00 1f6fA a.26.1.1 16839 1nfp 228 1.25e+00 1nfp c.1.16.2 29555 1eswA 500 1.42e+00 1cwyA c.1.8.1 59500 1h3nA 878 1.42e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1h05A 146 1.59e+00 c.23.13.1 76433 1tqgA 105 1.61e+00 a.24.10.3 107224 1sz7A 200 1.78e+00 1xszA 356 1.99e+00 1ezwA 349 2.37e+00 1ezwA c.1.16.3 29558 1i0lA 221 2.40e+00 c.61.1.1 71096 1o6vA 466 2.46e+00 b.1.18.15,c.10.2.1 81099,81100 1xzoA 174 3.00e+00 1jmvA 141 3.27e+00 c.26.2.4 66897 1fzqA 181 3.32e+00 1hurA c.37.1.8 32060 1k4nA 192 3.35e+00 d.32.1.5 72059 1h5qA 265 3.44e+00 1cydA c.2.1.2 60643 1o9iA 266 3.72e+00 a.25.1.3 92671 1xfiA 367 3.77e+00 e.50.1.1 109584 1e8gA 560 3.95e+00 1qltA d.58.32.1,d.145.1.1 39455,41718 1ufoA 238 3.97e+00 c.69.1.27 99344 1jayA 212 4.54e+00 c.2.1.6 66478 1u55A 188 4.65e+00 d.278.1.1 107677 1dxy 333 4.80e+00 1dxy c.2.1.4,c.23.12.1 30094,31354 1ihjA 98 4.82e+00 1pdr b.36.1.1 62382 1uv7A 110 4.91e+00 d.67.4.1 100040 1jpzA 473 4.94e+00 a.104.1.1 67069 1bn7A 294 5.36e+00 1bn6A c.69.1.8 34677 2dfkA 402 5.37e+00 1c02A 166 5.88e+00 1qspA a.24.10.2 16633 1i5nA 146 5.95e+00 1i5nA a.24.10.3 61805 1on2A 142 6.20e+00 a.4.5.24,a.76.1.1 87103,87104 1pv5A 264 6.31e+00 d.251.1.1 95150 1ursA 402 7.03e+00 c.94.1.1 99833 1qd1A 325 7.11e+00 1qd1A d.58.34.1,d.58.34.1 39493,39494 1kkoA 413 7.17e+00 c.1.11.2,d.54.1.1 68675,68676 1g5hA 454 7.37e+00 1g5hA c.51.1.1,d.104.1.1 60270,60271 1h5uA 842 7.65e+00 1a8i c.87.1.4 60655 1cliA 345 8.39e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1cr1A 296 9.15e+00 1cr1A c.37.1.11 32286 7odcA 424 9.21e+00 7odcA b.49.2.3,c.1.6.1 26488,28650 1j0dA 341 9.29e+00 c.79.1.1 83902 2tpsA 227 9.87e+00 2tpsA c.1.3.1 28591 1dosA 358 9.91e+00 1dosA c.1.10.2 29175 1jnyA 435 1.04e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1p1xA 260 1.06e+01 c.1.10.1 104060 1gefA 123 1.09e+01 1gefA c.52.1.18 60465 1dugA 234 1.09e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1q92A 197 1.11e+01 c.108.1.8 96250 1d4oA 184 1.17e+01 1d4oA c.31.1.4 31748 1jae 471 1.25e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1e6cA 173 1.31e+01 1shkA c.37.1.2 59296 1mj5A 302 1.35e+01 c.69.1.8 91285 1qtwA 285 1.38e+01 1qumA c.1.15.1 29392 1hf8A 289 1.39e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1tl9A 339 1.41e+01 1o9rA 162 1.44e+01 a.25.1.1 86706 1e3oC 160 1.47e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1f46A 140 1.47e+01 1f46A d.129.4.1 59643 1fl2A 310 1.49e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1j1jA 240 1.53e+01 a.118.16.1 90762 1vjoA 393 1.56e+01 c.67.1.3 100827 1dp4A 435 1.56e+01 1dp4A c.93.1.1 35710 1j96A 323 1.61e+01 c.1.7.1 71616 1ep3A 311 1.68e+01 2dorA c.1.4.1 28597 1wdpA 495 1.73e+01 1b24A 188 1.74e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1ryiA 382 1.75e+01 1f89A 291 1.76e+01 d.160.1.1 64988 1lucA 355 1.80e+01 1lucA c.1.16.1 29547 1azsA 220 1.83e+01 1azsA d.58.29.1 39416 1k3yA 221 1.86e+01 a.45.1.1,c.47.1.5 77245,77246 1sg6A 393 1.88e+01 e.22.1.1 105522 1yacA 208 1.93e+01 1yacA c.33.1.3 31757 1hxrA 115 1.96e+01 1fwqA b.88.1.1 28392 1mw9X 592 1.98e+01 e.10.1.1 91480 1pdo 135 2.00e+01 1pdo c.54.1.1 33376 1pa7A 130 2.05e+01 a.40.1.1 94410 1b3uA 588 2.12e+01 1b3uA a.118.1.2 19135 1syyA 346 2.13e+01 a.25.1.2 106126 1a53 247 2.16e+01 1a53 c.1.2.4 28564 1usmA 80 2.17e+01 d.74.1.1 99876 7a3hA 303 2.17e+01 7a3hA c.1.8.3 28817 1fmcA 255 2.24e+01 1cydA c.2.1.2 29856 1dkuA 317 2.27e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1r62A 160 2.28e+01 d.122.1.3 104816 1x7yB 342 2.29e+01 1cydA 244 2.39e+01 1cydA c.2.1.2 29825 1amuA 563 2.44e+01 1amuA e.23.1.1 43351 1iv8A 720 2.45e+01 b.71.1.1,c.1.8.1 76842,76843 1e4yA 214 2.46e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1jndA 420 2.51e+01 c.1.8.5,d.26.3.1 71757,71758 1b6g 310 2.52e+01 1b6g c.69.1.8 34661 1fs5A 266 2.53e+01 c.124.1.1 65044 1k0wA 231 2.58e+01 c.74.1.1 77220 1ct5A 256 2.62e+01 1ct5A c.1.6.2 28663 1vc4A 254 2.62e+01 c.1.2.4 100557 1s95A 333 2.63e+01 d.159.1.3 105375 1w6uA 302 2.69e+01 8abp 306 2.72e+01 8abp c.93.1.1 35647 1gtvA 214 2.78e+01 c.37.1.1 70537 1fm4A 159 2.79e+01 1bv1 d.129.3.1 76186 1t1jA 125 2.81e+01 c.137.1.1 106249 1r8sA 164 2.83e+01 c.37.1.8 97247 1kafA 108 2.92e+01 d.199.1.1 68372 1thfD 253 2.94e+01 1thfD c.1.2.1 28535 1fukA 165 2.95e+01 1fukA c.37.1.19 32409 1r89A 437 2.96e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1obdA 306 2.97e+01 d.143.1.1 86767 1s99A 200 3.01e+01 1pbyB 337 3.03e+01 b.69.2.2 94422 1gdhA 320 3.03e+01 1gdhA c.2.1.4,c.23.12.1 30095,31355 1evlA 401 3.06e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1mun 225 3.06e+01 1mun a.96.1.2 18744 1vl1A 232 3.11e+01 c.124.1.1 108707 1qusA 322 3.12e+01 1ltm d.2.1.6 36991 1ls1A 295 3.15e+01 a.24.13.1,c.37.1.10 78170,78171 1of8A 370 3.23e+01 c.1.10.4 92819 1id0A 152 3.26e+01 d.122.1.3 66111 1qy1A 174 3.35e+01 b.60.1.1 96568 1j4aA 333 3.39e+01 c.2.1.4,c.23.12.1 71502,71503 1jfzA 154 3.40e+01 a.149.1.1 66655 1uf5A 303 3.43e+01 d.160.1.2 107808 1im8A 244 3.43e+01 c.66.1.14 66212 1k7cA 233 3.45e+01 c.23.10.4 68267 1vhnA 318 3.49e+01 c.1.4.1 100693 1lb3A 182 3.54e+01 a.25.1.1 77873 1a99A 344 3.66e+01 1pot c.94.1.1 35812 1dhn 121 3.71e+01 1dhn d.96.1.3 40663 1nar 290 3.71e+01 1nar c.1.8.5 28988 1y80A 210 3.77e+01 1g63A 181 3.79e+01 1g5qA c.34.1.1 60299 1gesA 450 3.84e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1fr2A 86 3.86e+01 a.28.2.1 83256 1f4pA 147 3.86e+01 5nul c.23.5.1 59651 1b4pA 217 3.89e+01 a.45.1.1,c.47.1.5 83158,83159 1nnhA 294 3.90e+01 d.104.1.1 92005 1w41A 101 3.91e+01 1gnlA 544 4.08e+01 e.26.1.1 70287 2a0b 125 4.10e+01 2a0b a.24.10.1 16630 1j1nA 492 4.15e+01 c.94.1.1 83978 1vl2A 421 4.18e+01 c.26.2.1,d.210.1.1 108708,108709 1j8mF 297 4.18e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1m1nA 491 4.25e+01 c.92.2.3 78417 1t9iA 163 4.35e+01 1fnnA 389 4.37e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1vimA 200 4.39e+01 c.80.1.3 100758 1h3qA 140 4.54e+01 d.110.4.3 76652 1anf 370 4.56e+01 4mbp c.94.1.1 35776 1aisA 182 4.61e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1c0pA 363 4.64e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1qw9A 502 4.65e+01 b.71.1.2,c.1.8.3 96466,96467 1ituA 369 4.75e+01 c.1.9.7 71423 1ceo 343 4.81e+01 1ceo c.1.8.3 28808 1ytvA 366 4.96e+01 1zin 217 4.98e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1pot 325 5.01e+01 1pot c.94.1.1 35807 1gq6A 313 5.01e+01 c.42.1.1 70341 1aep 161 5.02e+01 1aep a.63.1.1 18139 1k2xB 143 5.06e+01 1ig3A 263 5.23e+01 1ig3A b.82.6.1,c.100.1.1 62358,62359 1bw0A 416 5.25e+01 1bw0A c.67.1.1 34385 1gwmA 153 5.26e+01 b.18.1.19 83348 1f74A 293 5.27e+01 1nal3 c.1.10.1 29079 1dqwA 267 5.29e+01 1dqwA c.1.2.3 28551 1eemA 241 5.35e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1e6yA 569 5.36e+01 1mroA a.89.1.1,d.58.31.2 18529,39447 1jadA 251 5.44e+01 h.4.10.1 66461 1hqkA 154 5.46e+01 c.16.1.1 65902 1g7nA 131 5.50e+01 b.60.1.2 83274 1h75A 81 5.52e+01 1h75A c.47.1.1 60716 1fljA 260 5.59e+01 2cba b.74.1.1 27954 1dekA 241 5.74e+01 1dekA c.37.1.1 31842 1jftA 340 5.83e+01 a.35.1.5,c.93.1.1 66652,66653 1p5vB 147 5.98e+01 b.2.3.2 87814 1hxhA 253 5.98e+01 c.2.1.2 76725 1rkuA 206 6.01e+01 c.108.1.11 97627 1xttA 216 6.07e+01 1msk 331 6.11e+01 1msk d.173.1.1 42495 1g87A 614 6.13e+01 a.102.1.2,b.2.2.2 83275,83276 1aj8A 371 6.16e+01 1aj8A a.103.1.1 18900 1ir6A 424 6.17e+01 c.107.1.2 71342 1y8aA 332 6.22e+01 1gjwA 637 6.24e+01 b.71.1.1,c.1.8.1 60582,60583 1o54A 277 6.28e+01 c.66.1.13 92482 1ezfA 340 6.35e+01 1ezfA a.128.1.2 19440 1rk6A 496 6.44e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1mgtA 174 6.53e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1eny 268 6.59e+01 1eny c.2.1.2 29910 1ghpA 258 6.59e+01 1btl e.3.1.1 60520 1lxjA 104 6.64e+01 d.58.48.1 84736 1fc4A 401 6.67e+01 1bs0A c.67.1.4 59760 1eqfA 280 6.67e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1k0iA 394 6.81e+01 c.3.1.2,d.16.1.2 67942,67943 1jmxB 349 6.82e+01 b.69.2.2 66906 1es9A 232 6.84e+01 1wab c.23.10.3 31340 1je0A 236 6.94e+01 c.56.2.1 66581 1dqpA 230 6.95e+01 1dqnA c.61.1.1 34069 1dofA 403 6.99e+01 1c3cA a.127.1.1 19429 1dpe 507 7.02e+01 1dpe c.94.1.1 35799 1wvfA 520 7.09e+01 1fobA 334 7.14e+01 c.1.8.3 83255 1jakA 512 7.16e+01 c.1.8.6,d.92.2.1 66472,66473 1brwA 433 7.16e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1dpgA 485 7.24e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1hrhA 136 7.29e+01 1rthA c.55.3.1 33577 1m7yA 435 7.29e+01 c.67.1.4 78761 1d3gA 367 7.40e+01 1d3gA c.1.4.1 28600 1lqtA 456 7.41e+01 c.3.1.1,c.4.1.1 74198,74199 1j6oA 268 7.52e+01 c.1.9.12 77088 1jsmA 325 7.55e+01 b.19.1.2 63264 1hh1A 143 7.57e+01 1gefA c.52.1.18 61036 1a3c 181 7.57e+01 1a3c c.61.1.1 34095 1bed 181 7.59e+01 1fvkA c.47.1.13 90330 1jk0B 345 7.68e+01 a.25.1.2 63143 1edg 380 7.69e+01 1edg c.1.8.3 28807 1kjwA 295 7.84e+01 b.34.2.1,c.37.1.1 68643,68644 1ml4A 308 7.85e+01 c.78.1.1,c.78.1.1 79255,79256 1yxyA 234 8.00e+01 1oxjA 173 8.08e+01 a.60.1.2,a.118.1.13 87517,87518 1vmhA 144 8.09e+01 1g2qA 187 8.12e+01 c.61.1.1 65117 1cp2A 269 8.17e+01 1cp2A c.37.1.10 32269 1e4iA 447 8.18e+01 1e70M c.1.8.4 59225 1nn5A 215 8.23e+01 c.37.1.1 85892 1pj5A 830 8.28e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1ykiA 217 8.31e+01 1g8lA 411 8.49e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1i36A 264 8.49e+01 a.100.1.8,c.2.1.6 71108,71109 1rvkA 382 8.63e+01 c.1.11.2,d.54.1.1 97928,97929 1ds1A 324 8.72e+01 1drtA b.82.2.2 28127 1ib2A 349 8.73e+01 1ib2A a.118.1.8 62141 1x9iA 302 8.80e+01 1im5A 180 8.80e+01 c.33.1.3 66211 1hjsA 332 8.84e+01 c.1.8.3 83492 1ta8A 332 8.84e+01 1a5t 334 8.89e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1c7qA 445 8.95e+01 2pgi c.80.1.2 35307