# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ufoA 238 7.30e-02 c.69.1.27 99344 1n7oA 721 7.62e-02 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1ep3A 311 1.26e-01 2dorA c.1.4.1 28597 1edg 380 2.57e-01 1edg c.1.8.3 28807 1j6oA 268 4.01e-01 c.1.9.12 77088 1i60A 278 5.80e-01 c.1.15.4 71118 1xzoA 174 7.55e-01 1gq6A 313 9.29e-01 c.42.1.1 70341 1c93A 265 1.17e+00 2ebn c.1.8.5 28998 1eswA 500 1.72e+00 1cwyA c.1.8.1 59500 1edt 271 1.74e+00 2ebn c.1.8.5 28993 1d3gA 367 1.84e+00 1d3gA c.1.4.1 28600 1yxyA 234 2.45e+00 1iuqA 367 2.55e+00 c.112.1.1 90703 1ceo 343 2.64e+00 1ceo c.1.8.3 28808 1xfiA 367 2.70e+00 e.50.1.1 109584 1i0lA 221 3.06e+00 c.61.1.1 71096 1ezfA 340 3.54e+00 1ezfA a.128.1.2 19440 1e8gA 560 3.63e+00 1qltA d.58.32.1,d.145.1.1 39455,41718 1uuyA 167 3.97e+00 c.57.1.1 108059 1o7jA 327 4.12e+00 c.88.1.1 81140 2bhuA 602 4.18e+00 1gtzA 156 4.36e+00 c.23.13.1 70539 1icpA 376 4.44e+00 1oyc c.1.4.1 62270 1xffA 240 4.46e+00 d.153.1.1 109580 1k4nA 192 4.61e+00 d.32.1.5 72059 1jayA 212 5.94e+00 c.2.1.6 66478 1ijbA 202 5.99e+00 c.62.1.1 71229 1j96A 323 6.29e+00 c.1.7.1 71616 1jetA 517 6.62e+00 1jevA c.94.1.1 35718 1wdpA 495 6.81e+00 1hziA 129 7.31e+00 1rcb a.26.1.2 61449 1kkoA 413 7.44e+00 c.1.11.2,d.54.1.1 68675,68676 1ydyA 356 7.50e+00 1uf5A 303 7.74e+00 d.160.1.2 107808 1tqgA 105 8.78e+00 a.24.10.3 107224 1jpzA 473 9.33e+00 a.104.1.1 67069 1k7cA 233 9.40e+00 c.23.10.4 68267 2dfkA 402 9.67e+00 1i36A 264 9.86e+00 a.100.1.8,c.2.1.6 71108,71109 1sz7A 200 1.02e+01 1nc5A 373 1.04e+01 a.102.1.6 85548 1hf8A 289 1.04e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1gefA 123 1.04e+01 1gefA c.52.1.18 60465 1xszA 356 1.09e+01 1ds1A 324 1.11e+01 1drtA b.82.2.2 28127 1thfD 253 1.13e+01 1thfD c.1.2.1 28535 1gteA 1025 1.13e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1w41A 101 1.16e+01 1a8s 273 1.20e+01 1brt c.69.1.12 34710 1hnjA 317 1.21e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1fl2A 310 1.25e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 7a3hA 303 1.27e+01 7a3hA c.1.8.3 28817 1jndA 420 1.29e+01 c.1.8.5,d.26.3.1 71757,71758 1im8A 244 1.32e+01 c.66.1.14 66212 1qmgA 524 1.38e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1ispA 181 1.40e+01 c.69.1.18 76778 1aj8A 371 1.41e+01 1aj8A a.103.1.1 18900 1a4iA 301 1.52e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1o9iA 266 1.53e+01 a.25.1.3 92671 1of8A 370 1.55e+01 c.1.10.4 92819 1e7wA 291 1.55e+01 c.2.1.2 59373 1fiuA 286 1.55e+01 1fiuA c.52.1.10 33317 1w8kA 447 1.59e+01 1j0dA 341 1.60e+01 c.79.1.1 83902 1mugA 168 1.63e+01 1mugA c.18.1.2 31030 1fobA 334 1.65e+01 c.1.8.3 83255 1qy1A 174 1.65e+01 b.60.1.1 96568 1g0cA 364 1.71e+01 7a3hA c.1.8.3 60165 1h3nA 878 1.79e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1uxy 340 1.81e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1dozA 309 1.82e+01 1ak1 c.92.1.1 35592 1hzdA 272 1.82e+01 c.14.1.3 65969 1c7qA 445 1.90e+01 2pgi c.80.1.2 35307 1anf 370 1.90e+01 4mbp c.94.1.1 35776 2tpsA 227 1.93e+01 2tpsA c.1.3.1 28591 1zjjA 263 1.95e+01 1pa7A 130 1.97e+01 a.40.1.1 94410 2a0b 125 1.98e+01 2a0b a.24.10.1 16630 1o6vA 466 1.99e+01 b.1.18.15,c.10.2.1 81099,81100 1h5qA 265 2.04e+01 1cydA c.2.1.2 60643 1k0iA 394 2.10e+01 c.3.1.2,d.16.1.2 67942,67943 1ytvA 366 2.11e+01 1lqtA 456 2.14e+01 c.3.1.1,c.4.1.1 74198,74199 1nzyA 269 2.18e+01 1nzyA c.14.1.3 30903 1r6xA 395 2.20e+01 b.122.1.3,c.26.1.5 97167,97168 1i6pA 220 2.27e+01 1ddzA c.53.2.1 61848 1k0wA 231 2.34e+01 c.74.1.1 77220 1qksA 567 2.42e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1pdo 135 2.43e+01 1pdo c.54.1.1 33376 1vdwA 254 2.48e+01 e.7.1.1 100569 1f4pA 147 2.53e+01 5nul c.23.5.1 59651 1elkA 157 2.57e+01 1dvpA a.118.9.2 19217 1cydA 244 2.63e+01 1cydA c.2.1.2 29825 1jmvA 141 2.81e+01 c.26.2.4 66897 1o9rA 162 2.81e+01 a.25.1.1 86706 1c3cA 429 2.83e+01 1c3cA a.127.1.1 19425 1fzqA 181 2.89e+01 1hurA c.37.1.8 32060 1r7aA 504 2.97e+01 b.71.1.1,c.1.8.1 97192,97193 1j8mF 297 2.99e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1jx6A 342 3.04e+01 c.93.1.1 67406 1vyrA 364 3.06e+01 c.1.4.1 108906 1hrhA 136 3.10e+01 1rthA c.55.3.1 33577 2bkxA 242 3.17e+01 1f9vA 347 3.20e+01 1bg2 c.37.1.9 59745 1bouA 139 3.24e+01 1bouA a.88.1.1 18521 1c7sA 858 3.26e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1fnnA 389 3.34e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1bebA 162 3.43e+01 1bebA b.60.1.1 27115 1p1xA 260 3.51e+01 c.1.10.1 104060 1j1jA 240 3.69e+01 a.118.16.1 90762 1aj2 282 3.72e+01 1aj2 c.1.21.1 29665 1vjpA 394 3.82e+01 c.2.1.3,d.81.1.3 100828,100829 1fmcA 255 3.88e+01 1cydA c.2.1.2 29856 1fs5A 266 3.89e+01 c.124.1.1 65044 1e3oC 160 3.95e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1qo7A 394 3.97e+01 1qo7A c.69.1.11 34697 1qd1A 325 4.13e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1c0pA 363 4.16e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1j79A 347 4.17e+01 1j79A c.1.9.4 62675 2bjfA 329 4.20e+01 1vc4A 254 4.25e+01 c.1.2.4 100557 1w3iA 293 4.34e+01 c.1.10.1 109152 1lc5A 364 4.35e+01 c.67.1.1 73827 1i5nA 146 4.39e+01 1i5nA a.24.10.3 61805 1g8kA 825 4.43e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1iv8A 720 4.50e+01 b.71.1.1,c.1.8.1 76842,76843 1qtwA 285 4.51e+01 1qumA c.1.15.1 29392 1ehyA 294 4.55e+01 1ehyA c.69.1.11 34693 1id0A 152 4.60e+01 d.122.1.3 66111 1pe9A 361 4.61e+01 b.80.1.1 94595 1t2dA 322 4.63e+01 c.2.1.5,d.162.1.1 99084,99085 1px5A 349 4.67e+01 a.160.1.2,d.218.1.6 95277,95278 1h6kA 757 4.73e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1vdkA 466 4.88e+01 a.127.1.1 100561 1s1dA 331 4.97e+01 b.67.3.1 98344 1obdA 306 4.97e+01 d.143.1.1 86767 1frb 315 5.01e+01 1frb c.1.7.1 28665 1wvfA 520 5.08e+01 1h80A 464 5.15e+01 b.80.1.8 65714 1g0oA 283 5.17e+01 1ybvA c.2.1.2 60181 1r89A 437 5.20e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1rvkA 382 5.20e+01 c.1.11.2,d.54.1.1 97928,97929 1msk 331 5.21e+01 1msk d.173.1.1 42495 1e4yA 214 5.23e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1gnlA 544 5.26e+01 e.26.1.1 70287 1jbkA 195 5.26e+01 c.37.1.20 71631 1jnyA 435 5.28e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1m1nA 491 5.29e+01 c.92.2.3 78417 1huxA 270 5.34e+01 1huxA c.55.1.5 61278 1s2wA 295 5.46e+01 c.1.12.7 98407 1dq3A 454 5.51e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1fehA 574 5.52e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1gegA 256 5.72e+01 1ybvA c.2.1.2 29888 1ig3A 263 5.78e+01 1ig3A b.82.6.1,c.100.1.1 62358,62359 1cojA 212 5.88e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1x7yB 342 5.94e+01 1dtdA 303 5.96e+01 1aye c.56.5.1 33823 1ug6A 431 6.00e+01 c.1.8.4 88490 1e6iA 121 6.03e+01 1b91A a.29.2.1 16969 1oxxK 353 6.04e+01 b.40.6.3,c.37.1.12 93715,93716 1hf2A 210 6.08e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1ir6A 424 6.09e+01 c.107.1.2 71342 1vl1A 232 6.21e+01 c.124.1.1 108707 1gjwA 637 6.27e+01 b.71.1.1,c.1.8.1 60582,60583 1u55A 188 6.28e+01 d.278.1.1 107677 1ytlA 174 6.33e+01 1jsmA 325 6.53e+01 b.19.1.2 63264 1pj5A 830 6.56e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1ca1 370 7.03e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1hqkA 154 7.19e+01 c.16.1.1 65902 1h6fA 193 7.30e+01 b.2.5.4 70901 1amuA 563 7.32e+01 1amuA e.23.1.1 43351 1guzA 310 7.51e+01 c.2.1.5,d.162.1.1 65586,65587 1qw9A 502 7.57e+01 b.71.1.2,c.1.8.3 96466,96467 2bjiA 277 7.64e+01 1km4A 247 7.73e+01 c.1.2.3 72740 1ve1A 304 7.82e+01 1a3c 181 7.87e+01 1a3c c.61.1.1 34095 1x74A 360 7.92e+01 8abp 306 8.00e+01 8abp c.93.1.1 35647 1q92A 197 8.14e+01 c.108.1.8 96250 1pvgA 418 8.14e+01 d.14.1.3,d.122.1.2 95161,95162 1k2xB 143 8.20e+01 1h05A 146 8.24e+01 c.23.13.1 76433 1jakA 512 8.37e+01 c.1.8.6,d.92.2.1 66472,66473 1h16A 759 8.57e+01 c.7.1.1 76462 1vprA 374 8.84e+01 1oi6A 205 8.96e+01 b.82.1.1 103940 1mnnA 340 8.98e+01 b.2.5.7 79324