# This file is the result of combining several RDB files, specifically # T0296.t04.dssp-ebghstl.rdb (weight 1.53986) # T0296.t04.stride-ebghtl.rdb (weight 1.24869) # T0296.t04.str2.rdb (weight 1.54758) # T0296.t04.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0296.t04.dssp-ebghstl.rdb # ============================================ # TARGET T0296 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0296.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.8129 # # ============================================ # Comments from T0296.t04.stride-ebghtl.rdb # ============================================ # TARGET T0296 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0296.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.8129 # # ============================================ # Comments from T0296.t04.str2.rdb # ============================================ # TARGET T0296 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0296.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.8129 # # ============================================ # Comments from T0296.t04.alpha.rdb # ============================================ # TARGET T0296 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0296.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.8129 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.0820 0.0117 0.9064 2 D 0.0975 0.0191 0.8835 3 I 0.0140 0.8677 0.1182 4 R 0.0114 0.9059 0.0827 5 Q 0.0149 0.9159 0.0693 6 V 0.0106 0.9386 0.0508 7 T 0.0080 0.9512 0.0408 8 E 0.0089 0.9518 0.0392 9 T 0.0080 0.9490 0.0430 10 I 0.0059 0.9543 0.0398 11 A 0.0068 0.9469 0.0463 12 M 0.0059 0.9397 0.0543 13 I 0.0079 0.9214 0.0707 14 E 0.0103 0.8803 0.1094 15 E 0.0185 0.7759 0.2056 16 Q 0.0452 0.4177 0.5371 17 N 0.0562 0.1687 0.7752 18 F 0.1156 0.0423 0.8422 19 D 0.2305 0.0272 0.7423 20 I 0.7578 0.0354 0.2069 21 R 0.7823 0.0353 0.1824 22 T 0.8715 0.0215 0.1070 23 I 0.8532 0.0240 0.1228 24 T 0.7822 0.0361 0.1817 25 M 0.6263 0.0834 0.2903 26 G 0.5269 0.0595 0.4136 27 I 0.6062 0.0413 0.3526 28 S 0.5938 0.0396 0.3666 29 L 0.2819 0.3406 0.3775 30 L 0.1179 0.5105 0.3716 31 D 0.0975 0.4941 0.4083 32 C 0.0902 0.3721 0.5377 33 I 0.1102 0.1911 0.6987 34 D 0.0724 0.0435 0.8841 35 P 0.0070 0.4870 0.5060 36 D 0.0224 0.5267 0.4509 37 I 0.0086 0.8521 0.1394 38 N 0.0052 0.9349 0.0598 39 R 0.0051 0.9439 0.0510 40 A 0.0056 0.9421 0.0523 41 A 0.0047 0.9514 0.0439 42 E 0.0047 0.9563 0.0390 43 K 0.0049 0.9547 0.0404 44 I 0.0047 0.9553 0.0400 45 Y 0.0048 0.9555 0.0396 46 Q 0.0048 0.9541 0.0410 47 K 0.0048 0.9492 0.0460 48 I 0.0055 0.9427 0.0519 49 T 0.0060 0.9337 0.0603 50 T 0.0054 0.9301 0.0645 51 K 0.0059 0.9166 0.0775 52 A 0.0063 0.9258 0.0680 53 A 0.0057 0.9211 0.0732 54 N 0.0057 0.9066 0.0877 55 L 0.0055 0.9316 0.0629 56 V 0.0049 0.9461 0.0489 57 A 0.0053 0.9464 0.0483 58 V 0.0048 0.9453 0.0499 59 G 0.0048 0.9467 0.0485 60 D 0.0047 0.9533 0.0420 61 E 0.0047 0.9582 0.0371 62 I 0.0047 0.9577 0.0376 63 A 0.0053 0.9539 0.0409 64 A 0.0053 0.9433 0.0514 65 E 0.0104 0.8942 0.0954 66 L 0.0448 0.5807 0.3746 67 G 0.0435 0.0485 0.9080 68 I 0.1772 0.0154 0.8074 69 P 0.4533 0.0105 0.5362 70 I 0.6290 0.0337 0.3373 71 V 0.5980 0.0599 0.3421 72 N 0.5141 0.0646 0.4213 73 K 0.5854 0.0709 0.3437 74 R 0.7285 0.0333 0.2382 75 V 0.7786 0.0241 0.1973 76 S 0.8171 0.0170 0.1659 77 V 0.7474 0.0203 0.2323 78 T 0.5239 0.0338 0.4423 79 P 0.3019 0.3958 0.3022 80 I 0.2221 0.5793 0.1985 81 S 0.2680 0.5842 0.1478 82 L 0.3186 0.5462 0.1352 83 I 0.3481 0.4592 0.1927 84 G 0.3172 0.3825 0.3003 85 A 0.2273 0.3251 0.4476 86 A 0.1180 0.2559 0.6260 87 T 0.0997 0.1366 0.7637 88 D 0.0680 0.1033 0.8287 89 A 0.0191 0.6126 0.3683 90 T 0.0172 0.7381 0.2447 91 D 0.0225 0.7803 0.1972 92 Y 0.0134 0.9145 0.0721 93 V 0.0064 0.9523 0.0413 94 V 0.0064 0.9563 0.0372 95 L 0.0055 0.9563 0.0382 96 A 0.0052 0.9542 0.0406 97 K 0.0050 0.9509 0.0441 98 A 0.0048 0.9467 0.0485 99 L 0.0049 0.9442 0.0509 100 D 0.0048 0.9514 0.0438 101 K 0.0047 0.9559 0.0394 102 A 0.0047 0.9560 0.0393 103 A 0.0047 0.9541 0.0412 104 K 0.0048 0.9430 0.0522 105 E 0.0057 0.9227 0.0716 106 I 0.0422 0.5682 0.3896 107 G 0.0506 0.0433 0.9060 108 V 0.1370 0.0269 0.8361 109 D 0.4530 0.0474 0.4996 110 F 0.5248 0.1278 0.3474 111 I 0.4240 0.1729 0.4031 112 G 0.2200 0.2191 0.5609 113 G 0.1313 0.2495 0.6192 114 F 0.0518 0.7216 0.2266 115 S 0.0205 0.8758 0.1038 116 A 0.0190 0.9095 0.0715 117 L 0.0330 0.8942 0.0728 118 V 0.0413 0.8649 0.0938 119 Q 0.0454 0.8027 0.1519 120 K 0.0492 0.5140 0.4367 121 G 0.0470 0.1309 0.8221 122 Y 0.1055 0.0706 0.8240 123 Q 0.1069 0.0763 0.8168 124 K 0.0456 0.2478 0.7066 125 G 0.0405 0.2120 0.7475 126 D 0.0827 0.4211 0.4962 127 E 0.0756 0.7233 0.2011 128 I 0.1019 0.7430 0.1551 129 L 0.0780 0.8000 0.1220 130 I 0.0685 0.8019 0.1296 131 N 0.0504 0.7448 0.2048 132 S 0.0324 0.7490 0.2186 133 I 0.0211 0.8102 0.1687 134 P 0.0083 0.9011 0.0906 135 R 0.0052 0.9356 0.0592 136 A 0.0058 0.9296 0.0646 137 L 0.0078 0.8963 0.0958 138 A 0.0063 0.7858 0.2079 139 E 0.0130 0.6004 0.3866 140 T 0.0655 0.2934 0.6411 141 D 0.0485 0.2237 0.7278 142 K 0.2848 0.2055 0.5097 143 V 0.5425 0.1414 0.3161 144 C 0.4926 0.1285 0.3790 145 S 0.4581 0.1244 0.4175 146 S 0.6104 0.0801 0.3095 147 V 0.7192 0.0267 0.2541 148 N 0.6842 0.0189 0.2968 149 I 0.5796 0.0757 0.3447 150 G 0.3862 0.0905 0.5234 151 S 0.2928 0.1079 0.5993 152 T 0.1890 0.1573 0.6537 153 K 0.1202 0.2514 0.6284 154 S 0.0823 0.1671 0.7506 155 G 0.1075 0.0974 0.7951 156 I 0.2990 0.0444 0.6566 157 N 0.2670 0.0410 0.6920 158 M 0.0147 0.8855 0.0999 159 T 0.0067 0.9279 0.0655 160 A 0.0080 0.9330 0.0590 161 V 0.0105 0.9325 0.0569 162 A 0.0078 0.9362 0.0560 163 D 0.0079 0.9182 0.0739 164 M 0.0098 0.8894 0.1007 165 G 0.0135 0.8153 0.1712 166 R 0.0255 0.8419 0.1326 167 I 0.0489 0.8634 0.0877 168 I 0.0650 0.8380 0.0969 169 K 0.0924 0.7692 0.1384 170 E 0.1013 0.7163 0.1825 171 T 0.0650 0.6224 0.3126 172 A 0.0559 0.5023 0.4418 173 N 0.0659 0.3502 0.5839 174 L 0.0792 0.2453 0.6755 175 S 0.0585 0.1543 0.7872 176 D 0.0465 0.2493 0.7042 177 M 0.0815 0.2693 0.6492 178 G 0.1216 0.2254 0.6530 179 V 0.2994 0.2242 0.4764 180 A 0.5638 0.1095 0.3267 181 K 0.6982 0.0912 0.2106 182 L 0.8622 0.0492 0.0886 183 V 0.8779 0.0435 0.0787 184 V 0.8741 0.0404 0.0855 185 F 0.7815 0.0515 0.1670 186 A 0.4551 0.0740 0.4709 187 N 0.2084 0.0764 0.7152 188 A 0.1610 0.1135 0.7255 189 V 0.1302 0.1992 0.6706 190 E 0.0876 0.2142 0.6982 191 D 0.0729 0.1463 0.7808 192 N 0.0985 0.0367 0.8648 193 P 0.0458 0.1929 0.7614 194 F 0.1025 0.2006 0.6969 195 M 0.1882 0.1935 0.6183 196 A 0.1859 0.2273 0.5868 197 G 0.1711 0.2452 0.5837 198 A 0.2005 0.2553 0.5442 199 F 0.2882 0.1880 0.5238 200 H 0.2130 0.1218 0.6651 201 G 0.1200 0.0699 0.8102 202 V 0.1194 0.0818 0.7988 203 G 0.0999 0.0677 0.8324 204 E 0.1499 0.1091 0.7410 205 A 0.2108 0.1120 0.6773 206 D 0.3084 0.1066 0.5850 207 V 0.8176 0.0311 0.1513 208 I 0.9068 0.0161 0.0771 209 I 0.8911 0.0182 0.0907 210 N 0.8590 0.0179 0.1231 211 V 0.7564 0.0409 0.2027 212 G 0.7325 0.0409 0.2266 213 V 0.6236 0.0353 0.3411 214 S 0.2983 0.0538 0.6478 215 G 0.0852 0.0460 0.8688 216 P 0.0331 0.3899 0.5770 217 G 0.0387 0.5638 0.3975 218 V 0.0530 0.7610 0.1860 219 V 0.0323 0.8541 0.1137 220 K 0.0132 0.9276 0.0591 221 R 0.0122 0.9323 0.0555 222 A 0.0099 0.9341 0.0560 223 L 0.0094 0.9217 0.0689 224 E 0.0110 0.8978 0.0912 225 K 0.0134 0.8036 0.1830 226 V 0.0445 0.6245 0.3309 227 R 0.0346 0.3588 0.6066 228 G 0.0275 0.1623 0.8102 229 Q 0.0663 0.1542 0.7795 230 S 0.1020 0.2156 0.6824 231 F 0.0289 0.8087 0.1624 232 D 0.0106 0.9118 0.0776 233 V 0.0170 0.9288 0.0542 234 V 0.0115 0.9385 0.0501 235 A 0.0073 0.9478 0.0448 236 E 0.0063 0.9469 0.0468 237 T 0.0067 0.9398 0.0535 238 V 0.0108 0.9277 0.0614 239 K 0.0144 0.9073 0.0782 240 K 0.0173 0.8790 0.1036 241 T 0.0184 0.8490 0.1326 242 A 0.0267 0.8374 0.1358 243 F 0.0510 0.8066 0.1425 244 K 0.0567 0.8079 0.1354 245 I 0.0806 0.7925 0.1270 246 T 0.0474 0.8271 0.1256 247 R 0.0393 0.8621 0.0986 248 I 0.0147 0.9142 0.0711 249 G 0.0126 0.9202 0.0672 250 Q 0.0094 0.9440 0.0466 251 L 0.0096 0.9481 0.0422 252 V 0.0059 0.9502 0.0439 253 G 0.0065 0.9481 0.0454 254 Q 0.0050 0.9587 0.0363 255 M 0.0051 0.9582 0.0368 256 A 0.0047 0.9569 0.0384 257 S 0.0051 0.9534 0.0416 258 E 0.0051 0.9445 0.0505 259 R 0.0064 0.9194 0.0742 260 L 0.0507 0.5584 0.3910 261 G 0.0553 0.0259 0.9188 262 V 0.1076 0.0079 0.8845 263 E 0.3269 0.0226 0.6505 264 F 0.6952 0.0227 0.2821 265 G 0.7980 0.0192 0.1829 266 I 0.8788 0.0113 0.1099 267 V 0.8357 0.0188 0.1456 268 D 0.6346 0.0342 0.3313 269 L 0.2744 0.1466 0.5790 270 S 0.1738 0.1310 0.6952 271 L 0.1369 0.1627 0.7004 272 A 0.1299 0.0615 0.8086 273 P 0.1278 0.0726 0.7996 274 T 0.1042 0.0379 0.8579 275 P 0.0410 0.1693 0.7897 276 A 0.0429 0.1624 0.7946 277 V 0.0565 0.2442 0.6993 278 G 0.0399 0.1918 0.7683 279 D 0.0389 0.4134 0.5477 280 S 0.0867 0.5970 0.3163 281 V 0.0093 0.9349 0.0558 282 A 0.0052 0.9587 0.0361 283 R 0.0049 0.9608 0.0343 284 V 0.0047 0.9610 0.0344 285 L 0.0047 0.9586 0.0367 286 E 0.0052 0.9506 0.0442 287 E 0.0078 0.9055 0.0867 288 M 0.0375 0.6587 0.3038 289 G 0.0370 0.2487 0.7144 290 L 0.0643 0.3117 0.6240 291 E 0.1216 0.4192 0.4592 292 T 0.1739 0.4134 0.4127 293 V 0.1662 0.2714 0.5624 294 G 0.0889 0.1015 0.8096 295 T 0.0724 0.1510 0.7766 296 H 0.0553 0.3263 0.6184 297 G 0.0383 0.5626 0.3991 298 T 0.0183 0.8852 0.0965 299 T 0.0052 0.9543 0.0405 300 A 0.0047 0.9600 0.0353 301 A 0.0047 0.9605 0.0348 302 L 0.0047 0.9608 0.0345 303 A 0.0047 0.9598 0.0355 304 L 0.0048 0.9537 0.0416 305 L 0.0050 0.9435 0.0515 306 N 0.0318 0.8707 0.0974 307 D 0.0062 0.9198 0.0739 308 Q 0.0065 0.9225 0.0710 309 V 0.0122 0.9089 0.0789 310 K 0.0101 0.8736 0.1162 311 K 0.0150 0.7418 0.2431 312 G 0.0513 0.4667 0.4820 313 G 0.0949 0.3021 0.6030 314 V 0.3163 0.3534 0.3303 315 M 0.4513 0.3245 0.2242 316 A 0.4606 0.2842 0.2552 317 C 0.3629 0.2824 0.3547 318 N 0.2172 0.2588 0.5240 319 Q 0.1952 0.2120 0.5928 320 V 0.2413 0.1414 0.6174 321 G 0.1627 0.0769 0.7604 322 G 0.1594 0.0841 0.7566 323 L 0.2547 0.1032 0.6421 324 S 0.2384 0.1354 0.6262 325 G 0.3084 0.1417 0.5499 326 A 0.5332 0.0860 0.3809 327 F 0.6936 0.0470 0.2594 328 I 0.5919 0.0289 0.3793 329 P 0.4230 0.0291 0.5479 330 V 0.1740 0.4143 0.4118 331 S 0.1058 0.5865 0.3077 332 E 0.0660 0.5981 0.3359 333 D 0.0567 0.6690 0.2743 334 E 0.0062 0.9245 0.0693 335 G 0.0064 0.9326 0.0610 336 M 0.0048 0.9530 0.0421 337 I 0.0049 0.9580 0.0371 338 A 0.0047 0.9588 0.0365 339 A 0.0048 0.9569 0.0383 340 V 0.0051 0.9488 0.0460 341 Q 0.0065 0.9139 0.0796 342 N 0.0399 0.4808 0.4793 343 G 0.0236 0.0508 0.9255 344 S 0.0877 0.0495 0.8627 345 L 0.3113 0.0154 0.6733 346 N 0.2179 0.0108 0.7713 347 L 0.0099 0.8932 0.0969 348 E 0.0055 0.9353 0.0592 349 K 0.0060 0.9299 0.0641 350 L 0.0086 0.9311 0.0603 351 E 0.0110 0.9150 0.0740 352 A 0.0127 0.8661 0.1212 353 M 0.0252 0.8184 0.1563 354 T 0.0468 0.7853 0.1678 355 A 0.0708 0.7656 0.1636 356 I 0.0855 0.7474 0.1671 357 C 0.1099 0.6229 0.2672 358 S 0.1099 0.4609 0.4292 359 V 0.1159 0.3190 0.5650 360 G 0.2156 0.1770 0.6074 361 L 0.3648 0.1041 0.5312 362 D 0.3669 0.1103 0.5228 363 M 0.7215 0.0706 0.2080 364 I 0.7684 0.0289 0.2027 365 A 0.7006 0.0275 0.2719 366 I 0.4280 0.0192 0.5528 367 P 0.1178 0.0413 0.8409 368 E 0.0251 0.1024 0.8725 369 D 0.0567 0.0563 0.8870 370 T 0.0654 0.0226 0.9120 371 P 0.0625 0.1327 0.8048 372 A 0.0054 0.9228 0.0717 373 E 0.0047 0.9495 0.0458 374 T 0.0047 0.9567 0.0385 375 I 0.0047 0.9590 0.0363 376 A 0.0047 0.9581 0.0373 377 A 0.0047 0.9530 0.0422 378 M 0.0047 0.9491 0.0462 379 I 0.0048 0.9466 0.0486 380 A 0.0051 0.9392 0.0558 381 D 0.0054 0.9345 0.0601 382 E 0.0062 0.9353 0.0586 383 A 0.0075 0.9259 0.0667 384 A 0.0112 0.9206 0.0682 385 I 0.0192 0.9038 0.0769 386 G 0.0357 0.8626 0.1017 387 V 0.0629 0.8049 0.1321 388 I 0.0885 0.6860 0.2256 389 N 0.0828 0.3144 0.6028 390 M 0.0695 0.0769 0.8536 391 K 0.1677 0.0191 0.8133 392 T 0.3865 0.0076 0.6058 393 T 0.7283 0.0173 0.2544 394 A 0.9037 0.0038 0.0926 395 V 0.9231 0.0035 0.0734 396 R 0.9257 0.0035 0.0708 397 I 0.9136 0.0036 0.0828 398 I 0.7478 0.0064 0.2458 399 P 0.3795 0.0153 0.6052 400 K 0.0852 0.0650 0.8498 401 G 0.0564 0.0340 0.9096 402 K 0.0840 0.0336 0.8824 403 E 0.1013 0.0485 0.8503 404 G 0.1414 0.0367 0.8219 405 D 0.3442 0.0283 0.6275 406 M 0.8062 0.0134 0.1803 407 I 0.8657 0.0120 0.1223 408 E 0.8482 0.0154 0.1364 409 F 0.6640 0.0547 0.2813 410 G 0.2058 0.0726 0.7217 411 G 0.1423 0.0854 0.7723 412 L 0.2680 0.1588 0.5732 413 L 0.2436 0.1423 0.6141 414 G 0.2140 0.0649 0.7212 415 T 0.3294 0.0478 0.6228 416 A 0.3340 0.0166 0.6494 417 P 0.4275 0.0147 0.5578 418 V 0.7359 0.0150 0.2491 419 M 0.7822 0.0105 0.2072 420 K 0.7603 0.0080 0.2317 421 V 0.5336 0.0302 0.4362 422 N 0.2254 0.0640 0.7106 423 G 0.0950 0.0575 0.8476 424 A 0.1463 0.0621 0.7915 425 S 0.1793 0.0566 0.7641 426 S 0.1053 0.5050 0.3897 427 V 0.0474 0.7558 0.1968 428 D 0.0836 0.7586 0.1578 429 F 0.0796 0.8050 0.1154 430 I 0.1145 0.7591 0.1264 431 S 0.0914 0.6963 0.2123 432 R 0.0631 0.3826 0.5543 433 G 0.0683 0.0622 0.8695 434 G 0.1030 0.0325 0.8645 435 Q 0.3261 0.0226 0.6513 436 I 0.3222 0.0155 0.6623 437 P 0.2275 0.0185 0.7539 438 A 0.2101 0.0421 0.7478 439 P 0.2677 0.0632 0.6692 440 I 0.2510 0.3044 0.4446 441 H 0.2272 0.3529 0.4198 442 S 0.2879 0.2922 0.4198 443 F 0.2340 0.1948 0.5712 444 K 0.1644 0.1431 0.6925 445 N 0.0802 0.0481 0.8717