# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i6pA 220 2.12e-02 1ddzA c.53.2.1 61848 1i60A 278 1.44e-01 c.1.15.4 71118 1ep3A 311 3.12e-01 2dorA c.1.4.1 28597 1ispA 181 3.42e-01 c.69.1.18 76778 1xszA 356 4.53e-01 1xzoA 174 4.76e-01 1c93A 265 4.77e-01 2ebn c.1.8.5 28998 1k7cA 233 4.98e-01 c.23.10.4 68267 1edt 271 5.28e-01 2ebn c.1.8.5 28993 2pth 193 8.21e-01 2pth c.56.3.1 33793 1thfD 253 8.28e-01 1thfD c.1.2.1 28535 1vyrA 364 9.07e-01 c.1.4.1 108906 12asA 330 9.72e-01 12asA d.104.1.1 40783 1jmvA 141 1.03e+00 c.26.2.4 66897 1cy5A 97 1.11e+00 1cy5A a.77.1.3 18430 1w8kA 447 1.38e+00 1lfpA 249 1.39e+00 e.39.1.1 73885 1j6oA 268 1.51e+00 c.1.9.12 77088 1uf5A 303 1.66e+00 d.160.1.2 107808 1at3A 247 1.71e+00 1at3A b.57.1.1 27021 1yxyA 234 1.88e+00 1uuqA 440 1.89e+00 c.1.8.3 100015 1c0pA 363 2.09e+00 1an9A c.4.1.2,d.16.1.3 30647,37934 1ufoA 238 2.59e+00 c.69.1.27 99344 1kkoA 413 3.37e+00 c.1.11.2,d.54.1.1 68675,68676 1pdo 135 3.40e+00 1pdo c.54.1.1 33376 1o7jA 327 3.89e+00 c.88.1.1 81140 1im8A 244 4.12e+00 c.66.1.14 66212 1sz7A 200 4.21e+00 1h5qA 265 4.23e+00 1cydA c.2.1.2 60643 1k4nA 192 4.47e+00 d.32.1.5 72059 1f89A 291 4.75e+00 d.160.1.1 64988 2dfkA 402 5.19e+00 1vziA 126 5.51e+00 b.1.13.1,g.41.5.2 108967,108968 1vdkA 466 5.66e+00 a.127.1.1 100561 1fp1D 372 5.68e+00 1fpqA a.4.5.29,c.66.1.12 59939,59940 1lqaA 346 6.31e+00 c.1.7.1 84674 1ak0 270 6.48e+00 1ak0 a.124.1.2 19345 1snyA 267 6.54e+00 c.2.1.2 105833 1j0dA 341 6.81e+00 c.79.1.1 83902 1jatA 155 8.30e+00 1u9aA d.20.1.1 62818 1v5vA 401 8.39e+00 1izcA 339 8.76e+00 c.1.12.5 83838 1uk8A 282 9.32e+00 c.69.1.10 107907 1v30A 124 9.35e+00 1w3iA 293 1.04e+01 c.1.10.1 109152 1vhwA 253 1.04e+01 c.56.2.1 100706 1qtwA 285 1.04e+01 1qumA c.1.15.1 29392 1ql0A 241 1.05e+01 1qaeA d.4.1.2 37139 1i0lA 221 1.06e+01 c.61.1.1 71096 1ds1A 324 1.09e+01 1drtA b.82.2.2 28127 1aj8A 371 1.10e+01 1aj8A a.103.1.1 18900 1o9iA 266 1.15e+01 a.25.1.3 92671 1jbkA 195 1.16e+01 c.37.1.20 71631 1i36A 264 1.21e+01 a.100.1.8,c.2.1.6 71108,71109 1f74A 293 1.24e+01 1nal3 c.1.10.1 29079 1yc5A 246 1.25e+01 1hrhA 136 1.28e+01 1rthA c.55.3.1 33577 1fzqA 181 1.34e+01 1hurA c.37.1.8 32060 1f4pA 147 1.35e+01 5nul c.23.5.1 59651 2arcA 164 1.41e+01 2arcA b.82.4.1 28148 2gk3A 256 1.48e+01 1fs5A 266 1.54e+01 c.124.1.1 65044 1cztA 160 1.55e+01 1cztA b.18.1.2 23715 1gq6A 313 1.58e+01 c.42.1.1 70341 1fltX 95 1.60e+01 1fltX b.1.1.4 21765 1hf8A 289 1.69e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1h2cA 140 1.71e+01 b.31.1.1 83462 1giqA 413 1.74e+01 d.166.1.1,d.166.1.1 76224,76225 1g3kA 174 1.82e+01 1nedA d.153.1.4 41989 1t2dA 322 1.85e+01 c.2.1.5,d.162.1.1 99084,99085 3lzt 129 2.01e+01 3lzt d.2.1.2 36245 1aj2 282 2.02e+01 1aj2 c.1.21.1 29665 2tpsA 227 2.10e+01 2tpsA c.1.3.1 28591 1ym3A 215 2.10e+01 1edg 380 2.15e+01 1edg c.1.8.3 28807 1qd1A 325 2.18e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1hf2A 210 2.31e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1nxuA 333 2.33e+01 c.122.1.1 86389 1gu3A 149 2.35e+01 b.18.1.14 76350 1g8mA 593 2.41e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1pe1A 267 2.52e+01 c.1.10.4 94591 1k4iA 233 2.58e+01 d.115.1.2 72056 1kq6A 141 2.65e+01 d.189.1.1 91020 1jqnA 883 2.66e+01 c.1.12.3 77159 1f60A 458 2.72e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1xkpA 246 2.75e+01 1e4yA 214 2.79e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1uaiA 224 2.87e+01 b.29.1.18 107761 1j3bA 529 2.90e+01 c.91.1.1,c.109.1.1 77071,77072 1jadA 251 2.93e+01 h.4.10.1 66461 1al3 324 3.05e+01 1al3 c.94.1.1 35835 1k0mA 241 3.17e+01 a.45.1.1,c.47.1.5 67949,67950 1pj5A 830 3.27e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1v7zA 260 3.32e+01 c.125.1.1 100488 1e7wA 291 3.40e+01 c.2.1.2 59373 1k0wA 231 3.47e+01 c.74.1.1 77220 1pa7A 130 3.47e+01 a.40.1.1 94410 1nc5A 373 3.48e+01 a.102.1.6 85548 1fc4A 401 3.54e+01 1bs0A c.67.1.4 59760 1tl9A 339 3.57e+01 1hjsA 332 3.61e+01 c.1.8.3 83492 1hl2A 297 3.61e+01 c.1.10.1 83581 1f9vA 347 3.63e+01 1bg2 c.37.1.9 59745 1o4vA 183 3.79e+01 c.23.8.1 86628 1kpf 126 3.95e+01 1kpf d.13.1.1 37507 1f2vA 219 3.96e+01 1f2vA c.23.17.1 59627 1eexG 173 4.00e+01 1dioG a.23.2.1 16490 1cr1A 296 4.06e+01 1cr1A c.37.1.11 32286 1eswA 500 4.10e+01 1cwyA c.1.8.1 59500 1i5nA 146 4.10e+01 1i5nA a.24.10.3 61805 1n7oA 721 4.14e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1ftrA 296 4.29e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1hqkA 154 4.31e+01 c.16.1.1 65902 1ezfA 340 4.51e+01 1ezfA a.128.1.2 19440 1jf8A 131 4.53e+01 c.44.1.1 66621 1k3xA 262 4.54e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1bw0A 416 4.60e+01 1bw0A c.67.1.1 34385 1k3yA 221 4.68e+01 a.45.1.1,c.47.1.5 77245,77246 1gs9A 165 4.73e+01 a.24.1.1 83313 1m1nA 491 4.74e+01 c.92.2.3 78417 1g8kA 825 4.82e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1tr9A 341 4.87e+01 1g5hA 454 5.01e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1oxjA 173 5.12e+01 a.60.1.2,a.118.1.13 87517,87518 1fi4A 416 5.19e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 2nlrA 234 5.20e+01 2nlrA b.29.1.11 24344 1ib2A 349 5.24e+01 1ib2A a.118.1.8 62141 16pk 415 5.29e+01 16pk c.86.1.1 35454 1jtvA 327 5.36e+01 c.2.1.2 84230 1fp2A 352 5.42e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1hfeL 421 5.42e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1c7qA 445 5.45e+01 2pgi c.80.1.2 35307 1ey4A 149 5.48e+01 1snc b.40.1.1 24815 1gnlA 544 5.49e+01 e.26.1.1 70287 1hzdA 272 5.58e+01 c.14.1.3 65969 1g6uA 48 5.60e+01 1g6uA k.9.1.1 46425 1ep3B 262 5.65e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1nar 290 5.65e+01 1nar c.1.8.5 28988 1tjyA 316 5.67e+01 c.93.1.1 107062 1p57A 114 5.80e+01 d.170.1.2 94125 1te2A 226 5.85e+01 c.108.1.6 106792 1f5vA 240 5.85e+01 1bkjA d.90.1.1 40255 1jl3A 139 5.89e+01 c.44.1.1 66826 1io7A 368 5.91e+01 1f4tA a.104.1.1 18971 1r8sA 164 6.03e+01 c.37.1.8 97247 1e0eA 55 6.09e+01 1wjcA a.4.10.1 59147 4eugA 229 6.16e+01 3eugA c.18.1.1 31019 1gtzA 156 6.40e+01 c.23.13.1 70539 1eceA 358 6.55e+01 1eceA c.1.8.3 28813 1rkuA 206 6.59e+01 c.108.1.11 97627 1eqfA 280 6.64e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1p1xA 260 6.64e+01 c.1.10.1 104060 1dtdA 303 6.65e+01 1aye c.56.5.1 33823 1c02A 166 6.65e+01 1qspA a.24.10.2 16633 1nlqA 108 6.66e+01 b.121.3.1 85853 1bkjA 240 6.74e+01 1bkjA d.90.1.1 40243 1iibA 106 6.77e+01 1iibA c.44.2.1 32648 1d2sA 170 6.80e+01 1d2sA b.29.1.4 24221 1dz3A 130 6.83e+01 1dz3A c.23.1.1 31105 1lucA 355 6.87e+01 1lucA c.1.16.1 29547 1j1jA 240 6.91e+01 a.118.16.1 90762 1fobA 334 6.98e+01 c.1.8.3 83255 1ysqA 193 7.12e+01 2gdm 153 7.22e+01 2gdm a.1.1.2 15212 1ea5A 537 7.25e+01 2bce c.69.1.1 34592 1dxeA 256 7.26e+01 1dxeA c.1.12.5 29310 1es9A 232 7.32e+01 1wab c.23.10.3 31340 1dyqA 234 7.37e+01 3seb b.40.2.2,d.15.6.1 59140,59141 2ciaA 102 7.39e+01 1jayA 212 7.60e+01 c.2.1.6 66478 1b3uA 588 7.69e+01 1b3uA a.118.1.2 19135 1he1A 135 7.72e+01 1he1A a.24.11.1 16641 1obdA 306 7.76e+01 d.143.1.1 86767 1xfiA 367 7.79e+01 e.50.1.1 109584 1frb 315 7.83e+01 1frb c.1.7.1 28665 1oi2A 366 7.87e+01 c.119.1.2 103802 1tqgA 105 7.89e+01 a.24.10.3 107224 1nfp 228 7.99e+01 1nfp c.1.16.2 29555 1fmcA 255 8.01e+01 1cydA c.2.1.2 29856 1jmtA 104 8.02e+01 d.58.7.3 63180 1fl2A 310 8.03e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1e3oC 160 8.06e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1fr2B 134 8.09e+01 d.4.1.1 83257 1ca1 370 8.14e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1pz4A 116 8.16e+01 d.106.1.1 95400 1e8gA 560 8.16e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1j31A 262 8.26e+01 d.160.1.2 90808 1jykA 254 8.28e+01 c.68.1.13 67458 1oqqA 106 8.31e+01 d.15.4.1 93422 1ie9A 259 8.39e+01 1db1A a.123.1.1 62318 1jeyB 565 8.41e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 1gqiA 708 8.45e+01 c.1.8.10,d.92.2.2 76279,76280 1qw9A 502 8.56e+01 b.71.1.2,c.1.8.3 96466,96467 1gx3A 284 8.58e+01 d.3.1.5 70678 1g63A 181 8.60e+01 1g5qA c.34.1.1 60299 1ijbA 202 8.62e+01 c.62.1.1 71229 2bo9B 222 8.67e+01 1yo3A 102 8.69e+01 1dkuA 317 8.70e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1a53 247 8.76e+01 1a53 c.1.2.4 28564 1fm0E 150 8.79e+01 1fmaE d.41.5.1 38629 1bf6A 291 8.85e+01 1pscA c.1.9.3 29065 1vmeA 410 8.86e+01 c.23.5.1,d.157.1.3 108893,108894 1icpA 376 8.88e+01 1oyc c.1.4.1 62270