PFRMAT RR TARGET T0296 AUTHOR 5370-1100-4902 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: logseploglen.5xt04_ent.5xnearNS_str2.miRpz_entR_pplR.n45.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 MDIRQVTETIAMIEEQNFDIRTITMGISLLDCIDPDINRAAEKIYQKITT KAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALD KAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIG STKSGINMTAVADMGRIIKETANLSDMGVAKLVVFANAVEDNPFMAGAFH GVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQ LVGQMASERLGVEFGIVDLSLA 6 18 0 8 0.264160862456 6 20 0 8 0.29812090621 6 23 0 8 0.248197946909 6 27 0 8 0.245672298841 10 20 0 8 0.260684680688 13 23 0 8 0.294172355731 13 25 0 8 0.252918410472 13 27 0 8 0.26138505682 13 29 0 8 0.263056135403 13 44 0 8 0.275206 13 48 0 8 0.262312168746 18 27 0 8 0.246854447872 18 223 0 8 0.262597784279 19 28 0 8 0.26050283663 20 29 0 8 0.250852414738 20 32 0 8 0.255848084157 20 68 0 8 0.246408783543 21 30 0 8 0.258084538364 22 32 0 8 0.250470834988 22 76 0 8 0.249605855826 23 32 0 8 0.282278387054 23 44 0 8 0.260227305471 23 48 0 8 0.253680919368 23 59 0 8 0.254742055895 23 62 0 8 0.254084619684 23 68 0 8 0.251425922922 23 70 0 8 0.256084579024 23 71 0 8 0.249373915193 23 110 0 8 0.250002399488 24 71 0 8 0.250301027119 24 73 0 8 0.291232994969 24 74 0 8 0.255282383231 24 77 0 8 0.263871993898 24 112 0 8 0.271223588152 24 113 0 8 0.261962143331 25 44 0 8 0.256596930351 25 62 0 8 0.25197438282 25 71 0 8 0.25784967001 26 72 0 8 0.276462339031 27 44 0 8 0.257417668382 27 48 0 8 0.283762507003 27 55 0 8 0.247831005767 27 58 0 8 0.253840968164 27 62 0 8 0.248188513138 27 70 0 8 0.255893301195 27 73 0 8 0.255384528194 27 75 0 8 0.305081313702 29 41 0 8 0.245954986653 29 44 0 8 0.252829277606 41 52 0 8 0.255716987278 44 55 0 8 0.281963179657 44 59 0 8 0.246465060863 44 62 0 8 0.319552713641 48 58 0 8 0.338838258847 48 59 0 8 0.251777574849 48 62 0 8 0.316391131403 48 68 0 8 0.309181461538 48 70 0 8 0.275261041322 48 75 0 8 0.255106069314 48 80 0 8 0.245379851957 48 99 0 8 0.255012382214 56 65 0 8 0.246563302197 56 69 0 8 0.26237560272 59 68 0 8 0.247713896893 59 70 0 8 0.251735936138 59 71 0 8 0.250123411992 59 99 0 8 0.247624113422 62 71 0 8 0.249696615204 62 99 0 8 0.255945024281 68 80 0 8 0.259389977016 69 146 0 8 0.277147457265 69 172 0 8 0.26131674331 69 182 0 8 0.252361818014 71 80 0 8 0.253789895682 71 82 0 8 0.256335061895 71 95 0 8 0.24844842978 71 96 0 8 0.24510594731 71 99 0 8 0.260339209507 71 108 0 8 0.244951103354 73 113 0 8 0.252215757223 74 112 0 8 0.254813297127 74 113 0 8 0.256308061793 75 86 0 8 0.252301962367 75 99 0 8 0.251762610938 75 111 0 8 0.248791298541 76 111 0 8 0.257959296929 77 112 0 8 0.264910684557 77 113 0 8 0.329603245902 79 112 0 8 0.256561472386 79 113 0 8 0.26089775378 80 95 0 8 0.249002419818 80 99 0 8 0.255160069518 80 111 0 8 0.265019986174 82 99 0 8 0.247210979336 83 99 0 8 0.252021876974 99 108 0 8 0.288637142857 99 111 0 8 0.24790094579 99 129 0 8 0.245872034533 103 116 0 8 0.249975399387 111 145 0 8 0.25194770802 111 147 0 8 0.250432774603 111 182 0 8 0.245566250249 111 222 0 8 0.354635178408 112 144 0 8 0.247965355671 112 146 0 8 0.244970946802 118 133 0 8 0.249479963786 129 184 0 8 0.264380766899 130 143 0 8 0.264455586458 130 145 0 8 0.25211361226 130 147 0 8 0.252415492915 130 168 0 8 0.245482972827 133 143 0 8 0.253743377434 133 147 0 8 0.310014428402 134 144 0 8 0.283197959049 137 147 0 8 0.296776419518 137 168 0 8 0.246253614284 144 153 0 8 0.245102043681 144 158 0 8 0.26510651662 144 180 0 8 0.260014882984 144 182 0 8 0.294092231884 144 183 0 8 0.329733561749 144 196 0 8 0.24791168077 144 212 0 8 0.252161431717 145 183 0 8 0.259325567135 145 185 0 8 0.296559060837 146 156 0 8 0.252002033526 146 158 0 8 0.25066926947 146 180 0 8 0.24916864936 146 183 0 8 0.286208641811 146 185 0 8 0.282184606341 146 212 0 8 0.320635320091 147 156 0 8 0.262736363115 147 158 0 8 0.257648633108 147 182 0 8 0.253167917436 147 183 0 8 0.247262051817 148 157 0 8 0.252651987781 148 186 0 8 0.255150310445 150 159 0 8 0.259259856044 158 168 0 8 0.252252191095 158 182 0 8 0.260246823617 158 183 0 8 0.27368580198 158 196 0 8 0.248556104884 161 180 0 8 0.251228464347 161 182 0 8 0.312977320887 161 183 0 8 0.273953809917 161 184 0 8 0.256712412714 168 182 0 8 0.277667388889 168 183 0 8 0.261426695531 168 184 0 8 0.347558230991 172 182 0 8 0.260695090366 172 183 0 8 0.245778347433 180 199 0 8 0.251822141282 180 226 0 8 0.25839585279 180 263 0 8 0.267727618705 180 265 0 8 0.261784853507 180 266 0 8 0.255279455509 181 207 0 8 0.541626950348 181 212 0 8 0.252648084152 181 226 0 8 0.256709810295 181 266 0 8 0.346994304139 182 196 0 8 0.265222649588 182 208 0 8 0.351304952202 182 209 0 8 0.265084396055 182 211 0 8 0.39381951382 182 212 0 8 0.320969105562 182 265 0 8 0.252559927194 182 266 0 8 0.262908122798 183 196 0 8 0.33069735102 183 197 0 8 0.263498872011 183 208 0 8 0.453443474929 183 209 0 8 0.475536146607 183 211 0 8 0.512902801326 183 212 0 8 0.354776649588 183 213 0 8 0.259007746661 183 267 0 8 0.280694855932 184 207 0 8 0.422308648203 184 208 0 8 0.619089739827 184 209 0 8 0.724512912647 184 211 0 8 0.519141436275 184 213 0 8 0.402087899647 184 219 0 8 0.258980095954 184 266 0 8 0.359850219178 184 267 0 8 0.382872932348 184 269 0 8 0.265406120158 185 196 0 8 0.367841071912 185 206 0 8 0.254209210514 185 207 0 8 0.596387400157 185 209 0 8 0.517667049885 185 212 0 8 0.328632808743 185 222 0 8 0.254660079683 185 266 0 8 0.531248494271 186 209 0 8 0.454235770104 186 213 0 8 0.292908864295 187 197 0 8 0.262961147094 187 198 0 8 0.259107289204 187 200 0 8 0.252586276691 187 209 0 8 0.258698709352 187 210 0 8 0.323753257329 187 211 0 8 0.254177005574 187 213 0 8 0.254878357613 187 214 0 8 0.275054636364 188 212 0 8 0.320259406356 193 214 0 8 0.250340388713 194 210 0 8 0.246285819224 194 214 0 8 0.261899359962 195 210 0 8 0.255517576888 195 211 0 8 0.252269432124 195 212 0 8 0.285974969374 195 213 0 8 0.25390602865 195 214 0 8 0.280262031073 196 211 0 8 0.259002216519 196 212 0 8 0.312359905484 197 210 0 8 0.264260079697 197 212 0 8 0.296467187579 197 214 0 8 0.27120025952 197 216 0 8 0.24665601339 198 209 0 8 0.264431188775 198 210 0 8 0.262716194364 198 211 0 8 0.257674657302 198 214 0 8 0.264222669918 200 214 0 8 0.261570153903 201 210 0 8 0.254874453984 201 214 0 8 0.262220758763 201 215 0 8 0.24636421711 201 216 0 8 0.246944556645 207 226 0 8 0.280503768362 207 266 0 8 0.261995649481 208 219 0 8 0.24595596256 208 266 0 8 0.285987139814 209 218 0 8 0.263455281485 209 219 0 8 0.354356799634 209 222 0 8 0.374013116599 209 223 0 8 0.262346325501 209 226 0 8 0.25038007561 209 234 0 8 0.2514363326 209 238 0 8 0.254784345211 209 245 0 8 0.259115421765 209 266 0 8 0.404120254417 209 267 0 8 0.422582298763 209 268 0 8 0.257900742491 209 269 0 8 0.262586398694 210 267 0 8 0.265303324591 210 268 0 8 0.259074108357 210 269 0 8 0.255153238167 210 270 0 8 0.255635986973 211 222 0 8 0.26267553156 211 231 0 8 0.248185910719 211 266 0 8 0.247115015119 211 267 0 8 0.304411620314 211 268 0 8 0.263878499947 211 269 0 8 0.319452547914 211 270 0 8 0.258394876882 212 248 0 8 0.249229806217 213 269 0 8 0.245193453664 213 270 0 8 0.248275694189 219 234 0 8 0.263102978953 219 238 0 8 0.258562732936 219 262 0 8 0.261573081625 223 233 0 8 0.256524713212 223 234 0 8 0.335561311065 223 235 0 8 0.253824703042 223 237 0 8 0.251068090249 223 238 0 8 0.308752432173 223 256 0 8 0.27991899435 223 262 0 8 0.258296635549 223 266 0 8 0.258656745339 234 256 0 8 0.285712087883 238 256 0 8 0.296899664132 245 256 0 8 0.254247921504 252 266 0 8 0.257117088937 252 267 0 8 0.260804717285 256 267 0 8 0.259213988401 END