CreatePredAlphaCost pred_alpha2k alpha11 T0295.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0295.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0295.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \ phobic_fit 2 \ sidechain 8 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 40 backbone_clashes 2 \ break 90 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 10 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 # from decoys/try1-opt2.sheets SheetConstraint L2 K4 N160 S158 hbond L2 1 SheetConstraint D22 G28 K43 D49 hbond V24 1 SheetConstraint V24 G28 V87 N91 hbond L25 1 SheetConstraint K44 I50 N69 G75 hbond V45 1 SheetConstraint D86 N91 K112 M117 hbond C88 1 SheetConstraint C113 K120 I173 D166 hbond A114 1 SheetConstraint F145 V151 K175 I169 hbond K147 1 SheetConstraint C152 N155 I169 D166 hbond C152 1 # from decoys/try1-opt2.helices HelixConstraint N5 A16 HelixConstraint L34 L39 HelixConstraint D51 G66 HelixConstraint I96 S106 HelixConstraint Q119 A128 HelixConstraint S136 C146 HelixConstraint N182 S195 HelixConstraint T200 F205 HelixConstraint R207 C222 HelixConstraint P233 D246 HelixConstraint D256 K269