# This file is the result of combining several RDB files, specifically # T0295.t04.dssp-ebghstl.rdb (weight 1.53986) # T0295.t04.stride-ebghtl.rdb (weight 1.24869) # T0295.t04.str2.rdb (weight 1.54758) # T0295.t04.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0295.t04.dssp-ebghstl.rdb # ============================================ # TARGET T0295 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0295.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2062 # # ============================================ # Comments from T0295.t04.stride-ebghtl.rdb # ============================================ # TARGET T0295 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0295.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2062 # # ============================================ # Comments from T0295.t04.str2.rdb # ============================================ # TARGET T0295 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0295.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2062 # # ============================================ # Comments from T0295.t04.alpha.rdb # ============================================ # TARGET T0295 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0295.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2062 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 H 0.0592 0.1624 0.7784 2 L 0.1102 0.3017 0.5881 3 L 0.1230 0.2198 0.6572 4 K 0.1104 0.1532 0.7364 5 N 0.0904 0.0404 0.8691 6 P 0.0070 0.7854 0.2076 7 G 0.0078 0.8293 0.1629 8 I 0.0056 0.9237 0.0707 9 L 0.0048 0.9505 0.0448 10 D 0.0049 0.9554 0.0396 11 K 0.0052 0.9574 0.0374 12 I 0.0050 0.9573 0.0377 13 I 0.0051 0.9515 0.0434 14 Y 0.0062 0.9271 0.0667 15 A 0.0090 0.8246 0.1664 16 A 0.0534 0.4987 0.4479 17 K 0.0653 0.0940 0.8408 18 I 0.0970 0.0265 0.8765 19 K 0.0760 0.0307 0.8933 20 S 0.0389 0.1088 0.8523 21 S 0.0439 0.0504 0.9057 22 D 0.1733 0.0380 0.7887 23 I 0.8423 0.0045 0.1532 24 V 0.9237 0.0035 0.0728 25 L 0.9247 0.0034 0.0719 26 E 0.8986 0.0034 0.0980 27 I 0.6450 0.0235 0.3315 28 G 0.2419 0.0207 0.7374 29 C 0.0894 0.0763 0.8344 30 G 0.0786 0.0907 0.8307 31 T 0.0729 0.3299 0.5972 32 G 0.0250 0.7094 0.2656 33 N 0.0199 0.8692 0.1109 34 L 0.0158 0.8919 0.0923 35 T 0.0125 0.9120 0.0755 36 V 0.0092 0.9157 0.0751 37 K 0.0091 0.8964 0.0945 38 L 0.0113 0.8384 0.1503 39 L 0.0220 0.8095 0.1685 40 P 0.0153 0.7386 0.2461 41 L 0.0218 0.5805 0.3977 42 A 0.1223 0.2438 0.6339 43 K 0.1897 0.1566 0.6537 44 K 0.6068 0.0493 0.3439 45 V 0.8811 0.0113 0.1076 46 I 0.9080 0.0124 0.0796 47 T 0.9044 0.0089 0.0868 48 I 0.8664 0.0102 0.1234 49 D 0.6656 0.0101 0.3244 50 I 0.1650 0.0313 0.8037 51 D 0.0801 0.0178 0.9021 52 S 0.0053 0.8428 0.1519 53 R 0.0055 0.8812 0.1134 54 M 0.0054 0.9261 0.0685 55 I 0.0047 0.9537 0.0415 56 S 0.0047 0.9594 0.0359 57 E 0.0047 0.9594 0.0359 58 V 0.0047 0.9592 0.0361 59 K 0.0047 0.9578 0.0375 60 K 0.0049 0.9532 0.0419 61 R 0.0051 0.9463 0.0487 62 C 0.0058 0.9283 0.0659 63 L 0.0070 0.8891 0.1039 64 Y 0.0100 0.8111 0.1789 65 E 0.0414 0.4086 0.5501 66 G 0.0342 0.0711 0.8947 67 Y 0.0964 0.0575 0.8461 68 N 0.0951 0.0947 0.8102 69 N 0.1883 0.0485 0.7632 70 L 0.6631 0.0088 0.3281 71 E 0.8972 0.0061 0.0966 72 V 0.9206 0.0041 0.0753 73 Y 0.8778 0.0134 0.1087 74 E 0.7667 0.0235 0.2098 75 G 0.4814 0.0478 0.4709 76 D 0.3616 0.0876 0.5508 77 A 0.1333 0.4576 0.4091 78 I 0.1179 0.4697 0.4124 79 K 0.1471 0.4260 0.4270 80 T 0.1804 0.1315 0.6881 81 V 0.1624 0.0642 0.7735 82 F 0.0951 0.0415 0.8634 83 P 0.0561 0.1013 0.8425 84 K 0.0687 0.1200 0.8113 85 F 0.1680 0.0225 0.8096 86 D 0.1677 0.0467 0.7856 87 V 0.9048 0.0046 0.0906 88 C 0.9289 0.0036 0.0675 89 T 0.9255 0.0043 0.0702 90 A 0.8596 0.0112 0.1293 91 N 0.3228 0.0310 0.6461 92 I 0.1493 0.0372 0.8135 93 P 0.1314 0.1876 0.6811 94 Y 0.1509 0.4320 0.4171 95 K 0.1605 0.4455 0.3940 96 I 0.1273 0.3535 0.5192 97 S 0.0877 0.2264 0.6859 98 S 0.0462 0.4213 0.5325 99 P 0.0083 0.8829 0.1089 100 L 0.0057 0.9361 0.0583 101 I 0.0057 0.9454 0.0489 102 F 0.0061 0.9491 0.0447 103 K 0.0056 0.9409 0.0535 104 L 0.0059 0.9203 0.0738 105 I 0.0075 0.8777 0.1148 106 S 0.0088 0.7513 0.2398 107 H 0.0178 0.5939 0.3883 108 R 0.0565 0.3624 0.5811 109 P 0.0193 0.5243 0.4564 110 L 0.0444 0.5567 0.3989 111 F 0.2031 0.3165 0.4804 112 K 0.1848 0.2761 0.5391 113 C 0.1152 0.3936 0.4912 114 A 0.1537 0.2834 0.5629 115 V 0.4911 0.2503 0.2586 116 L 0.6835 0.2222 0.0942 117 M 0.6952 0.2171 0.0878 118 F 0.6535 0.2182 0.1284 119 Q 0.4160 0.3343 0.2498 120 K 0.0983 0.7344 0.1673 121 E 0.0660 0.7912 0.1427 122 F 0.0380 0.8215 0.1405 123 A 0.0460 0.8025 0.1515 124 E 0.0740 0.7649 0.1611 125 R 0.0691 0.7390 0.1919 126 M 0.0845 0.6354 0.2801 127 L 0.1398 0.4059 0.4543 128 A 0.1442 0.2103 0.6455 129 N 0.1178 0.0960 0.7861 130 V 0.0610 0.1609 0.7781 131 G 0.0449 0.0847 0.8705 132 D 0.0795 0.0899 0.8307 133 S 0.0322 0.3591 0.6087 134 N 0.0506 0.3670 0.5824 135 Y 0.1028 0.3509 0.5463 136 S 0.1437 0.2890 0.5673 137 R 0.2495 0.3085 0.4420 138 L 0.3861 0.2346 0.3793 139 T 0.5505 0.1991 0.2503 140 I 0.6782 0.1605 0.1613 141 N 0.6974 0.1499 0.1527 142 V 0.7247 0.1268 0.1486 143 K 0.6770 0.1489 0.1741 144 L 0.6420 0.1512 0.2068 145 F 0.6149 0.1158 0.2693 146 C 0.6274 0.0769 0.2957 147 K 0.5999 0.0539 0.3462 148 V 0.6118 0.0528 0.3354 149 T 0.6861 0.0537 0.2602 150 K 0.7474 0.0520 0.2006 151 V 0.6515 0.0759 0.2726 152 C 0.6643 0.0561 0.2796 153 N 0.6128 0.0390 0.3482 154 V 0.4263 0.0328 0.5409 155 N 0.2276 0.0300 0.7424 156 R 0.0244 0.5301 0.4455 157 S 0.0299 0.5474 0.4228 158 S 0.0651 0.5329 0.4019 159 F 0.1942 0.1161 0.6897 160 N 0.1221 0.0358 0.8421 161 P 0.0859 0.0162 0.8979 162 P 0.0756 0.0165 0.9078 163 P 0.1046 0.0254 0.8700 164 K 0.2065 0.0373 0.7562 165 V 0.3832 0.0328 0.5840 166 D 0.4549 0.0448 0.5003 167 S 0.7462 0.0171 0.2367 168 V 0.8762 0.0082 0.1156 169 I 0.9014 0.0072 0.0914 170 V 0.8879 0.0088 0.1033 171 K 0.8717 0.0069 0.1214 172 L 0.8463 0.0075 0.1462 173 I 0.7001 0.0098 0.2901 174 P 0.4861 0.0158 0.4981 175 K 0.1792 0.0546 0.7662 176 E 0.1142 0.0733 0.8125 177 S 0.0751 0.1441 0.7807 178 S 0.0894 0.1679 0.7428 179 F 0.1666 0.1445 0.6889 180 L 0.2030 0.1109 0.6861 181 T 0.1777 0.1055 0.7168 182 N 0.1360 0.0598 0.8042 183 F 0.0089 0.8723 0.1188 184 D 0.0053 0.9176 0.0771 185 E 0.0053 0.9314 0.0633 186 W 0.0059 0.9385 0.0556 187 D 0.0050 0.9453 0.0497 188 N 0.0050 0.9497 0.0453 189 L 0.0050 0.9528 0.0422 190 L 0.0049 0.9554 0.0397 191 R 0.0050 0.9542 0.0408 192 I 0.0053 0.9464 0.0484 193 C 0.0065 0.9261 0.0674 194 F 0.0104 0.8880 0.1015 195 S 0.0137 0.8565 0.1298 196 R 0.0163 0.8531 0.1306 197 K 0.0131 0.8415 0.1454 198 R 0.0179 0.8476 0.1345 199 K 0.0098 0.9189 0.0713 200 T 0.0095 0.9357 0.0548 201 L 0.0047 0.9560 0.0393 202 H 0.0048 0.9584 0.0368 203 A 0.0048 0.9554 0.0398 204 I 0.0048 0.9516 0.0436 205 F 0.0060 0.9348 0.0592 206 K 0.0067 0.9061 0.0873 207 R 0.0116 0.8357 0.1528 208 N 0.0254 0.7266 0.2480 209 A 0.0437 0.5423 0.4139 210 V 0.0441 0.5097 0.4463 211 L 0.0080 0.8866 0.1054 212 N 0.0063 0.9185 0.0752 213 M 0.0055 0.9397 0.0548 214 L 0.0057 0.9411 0.0532 215 E 0.0053 0.9357 0.0590 216 H 0.0065 0.9074 0.0860 217 N 0.0088 0.8763 0.1150 218 Y 0.0129 0.8472 0.1399 219 K 0.0130 0.8196 0.1673 220 N 0.0182 0.7768 0.2050 221 W 0.0606 0.5813 0.3580 222 C 0.1184 0.2084 0.6732 223 T 0.1743 0.1076 0.7181 224 L 0.1761 0.0706 0.7533 225 N 0.0716 0.1501 0.7782 226 K 0.1009 0.1042 0.7949 227 Q 0.1920 0.0924 0.7156 228 V 0.2153 0.0440 0.7407 229 P 0.1781 0.0916 0.7304 230 V 0.1673 0.1449 0.6878 231 N 0.1805 0.1052 0.7143 232 F 0.1358 0.0151 0.8491 233 P 0.0973 0.0128 0.8898 234 F 0.0052 0.9315 0.0633 235 K 0.0048 0.9578 0.0374 236 K 0.0048 0.9567 0.0385 237 Y 0.0050 0.9576 0.0374 238 C 0.0052 0.9581 0.0368 239 L 0.0054 0.9566 0.0380 240 D 0.0057 0.9527 0.0416 241 V 0.0047 0.9539 0.0414 242 L 0.0051 0.9453 0.0495 243 E 0.0055 0.9138 0.0807 244 H 0.0085 0.8655 0.1259 245 L 0.0182 0.7967 0.1851 246 D 0.0175 0.7091 0.2734 247 M 0.0225 0.7443 0.2332 248 C 0.0571 0.6114 0.3316 249 E 0.0748 0.5713 0.3540 250 K 0.0926 0.5356 0.3718 251 R 0.1155 0.3846 0.4999 252 S 0.0970 0.3877 0.5154 253 I 0.1159 0.2851 0.5989 254 N 0.2069 0.2253 0.5678 255 L 0.1817 0.2276 0.5907 256 D 0.1485 0.2789 0.5726 257 E 0.0387 0.5272 0.4341 258 N 0.0334 0.4882 0.4784 259 D 0.0547 0.7286 0.2167 260 F 0.0544 0.8539 0.0917 261 L 0.0346 0.9000 0.0654 262 K 0.0505 0.8734 0.0760 263 L 0.0378 0.8677 0.0945 264 L 0.0308 0.8384 0.1307 265 L 0.0376 0.7023 0.2601 266 E 0.0236 0.6444 0.3320 267 F 0.0402 0.4747 0.4851 268 N 0.0831 0.1409 0.7759 269 K 0.0414 0.2884 0.6702 270 K 0.0638 0.1739 0.7623 271 G 0.1348 0.1114 0.7538 272 I 0.3150 0.0202 0.6648 273 H 0.5658 0.0121 0.4222 274 F 0.5041 0.0180 0.4779 275 F 0.2160 0.0268 0.7573