# List of top-scoring protein chains for T0295.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zq9A 285 9.45e-24 8jdwA 386 4.55e-01 1jdw d.126.1.2 41132 2jdxA 385 4.57e-01 1jdw d.126.1.2 41139 1vb3A 428 5.18e-01 4jdwA 423 5.28e-01 1jdw d.126.1.2 41137 1jdw 423 5.38e-01 1jdw d.126.1.2 41129 1qdlA 422 1.55e+00 1qdlA d.161.1.1 42088 1kdhA 363 2.03e+00 a.60.6.1,a.60.12.1,d.218.1.2 72349,75882,75883 1jmsA 381 2.09e+00 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1h6oA 204 2.96e+00 a.146.1.1 60689 1w7jB 151 3.21e+00 2ftcK 98 3.79e+00 2bmkB 226 3.91e+00 1cbg 490 5.51e+00 1e70M c.1.8.4 28933 1yf3A 259 5.95e+00 1m5xA 170 6.23e+00 d.95.2.1 84844 1nxuA 333 6.37e+00 c.122.1.1 86389 1s20A 340 6.53e+00 c.122.1.1 98356 1yfjA 259 6.72e+00 1q0sA 259 8.05e+00 c.66.1.28 95509 2fnpA 124 8.25e+00 1fzpB 123 9.39e+00 1fznD a.4.5.28 19008 1r89A 437 9.61e+00 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2frhA 127 9.66e+00 1i4wA 353 1.02e+01 c.66.1.24 66028 1yewA 382 1.20e+01 1gq2A 555 1.24e+01 c.2.1.7,c.58.1.3 70308,70309 1g2bA 62 1.57e+01 1tud b.34.2.1 24488 1r2uA 89 1.61e+01 a.39.1.5 104783 1m65A 245 1.66e+01 c.6.3.1 84847 2aepH 217 1.71e+01 1i5dA 191 1.76e+01 1b3qA d.122.1.3 61783 1ap4 89 1.79e+01 1ncx a.39.1.5 17253 1i58A 189 1.80e+01 1b3qA d.122.1.3 61773 2ax3A 502 1.88e+01 1n9dA 199 1.89e+01 a.26.1.1 85464 2fzlA 219 1.96e+01 1a8y 367 2.01e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1yadA 221 2.19e+01 1fp1D 372 2.37e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1l1jA 239 2.43e+01 b.47.1.1 84516 2mysC 149 2.73e+01 1wdcC a.39.1.5 17323 1mvwC 147 2.79e+01 i.15.1.1 79525 1zc8K 130 2.81e+01 1negA 83 3.09e+01 b.34.2.1 80425 2fewA 148 3.55e+01 1fl5B 219 3.62e+01 b.1.1.1,b.1.1.2 65017,65018 1a3aA 148 3.66e+01 1a3aA d.112.1.1 40917 1k8hA 133 3.70e+01 b.111.1.1 72176 1bjfA 193 3.84e+01 1rec a.39.1.5 17331 1qkxA 62 3.84e+01 1tuc b.34.2.1 24491 1avsA 90 3.90e+01 1cll a.39.1.5 17226 1pwt 61 3.90e+01 1tud b.34.2.1 24490 1r6kA 207 3.93e+01 b.91.1.1 97152 1ldkD 133 3.93e+01 a.157.1.1,d.42.1.1 73855,73856 1r6nA 211 3.95e+01 b.91.1.1 97157 1vf8A 377 3.98e+01 1oqeK 31 3.99e+01 g.24.1.2 87296 1qkwA 62 3.99e+01 1tuc b.34.2.1 24494 1fs1B 141 4.20e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1bk2 57 4.28e+01 1tuc b.34.2.1 24495 1do0A 442 4.35e+01 1do0A c.37.1.20 32432 1g4aE 443 4.36e+01 1do0A c.37.1.20 32444 1e94E 449 4.38e+01 1do0A c.37.1.20 32442 1unlA 292 4.46e+01 1hd3A 62 4.47e+01 b.34.2.1 65802 1h4lA 292 4.49e+01 d.144.1.7 70871 1guvA 366 4.50e+01 c.1.8.5,d.26.3.1 83333,83334 1u06A 62 4.52e+01 1smg 90 4.58e+01 1ncx a.39.1.5 17234 1uueA 62 4.59e+01 b.34.2.1 100005 1oejA 193 4.60e+01 b.60.1.4 92798 1lg2A 365 4.61e+01 c.1.8.5,d.26.3.1 77950,77951 2fwrA 472 4.68e+01 1hkkA 364 4.68e+01 c.1.8.5,d.26.3.1 90634,90635 1hkmA 365 4.73e+01 c.1.8.5,d.26.3.1 90636,90637 1tnw 162 4.87e+01 1ncx a.39.1.5 17235 1pz4A 116 4.95e+01 d.106.1.1 95400 1qndA 123 5.10e+01 1qndA d.106.1.1 40794 1azo 232 5.20e+01 1azo c.52.1.14 33329 1jc2A 76 5.29e+01 a.39.1.5 62862 2g7gA 213 5.37e+01 1txlA 215 5.42e+01 b.60.1.4 107429 2bjrA 368 5.46e+01 1s7dA 216 5.46e+01 b.60.1.4 105348 1p6vA 156 5.57e+01 b.111.1.1 94191 2astA 159 5.71e+01 1e6hA 62 5.73e+01 b.34.2.1 70084 1trf 76 5.74e+01 1ncx a.39.1.5 17247 1npqA 90 5.79e+01 a.39.1.5 85983 2blcA 238 5.79e+01 1la0A 161 5.83e+01 a.39.1.5 77864 1h8kA 62 5.88e+01 b.34.2.1 70915 2ahyA 110 6.15e+01 2azoA 232 6.19e+01 1azo c.52.1.14 33330 2bl9A 238 6.21e+01 1qwrA 319 6.25e+01 b.82.1.3 96491 2crpA 150 6.30e+01 2fpnA 216 6.44e+01 2ctn 89 6.55e+01 1ncx a.39.1.5 17242 1z5xE 310 6.55e+01 1wrkA 88 6.81e+01 1e7oA 62 6.82e+01 b.34.2.1 83169 1fnkA 127 7.00e+01 2chsA d.79.1.2 39777 1e6gA 62 7.01e+01 b.34.2.1 70083 1v9wA 130 7.08e+01 c.47.1.16 108453 1k0hA 117 7.22e+01 b.106.1.2 71975 1ponB 36 7.30e+01 1ponB 2bzgA 232 7.32e+01 1nzpA 87 7.44e+01 a.60.6.1 92385 5tnc 162 7.59e+01 1ncx a.39.1.5 17246 1wouA 123 7.60e+01 c.47.1.16 109471 4tnc 162 7.69e+01 1ncx a.39.1.5 17228 1top 162 7.99e+01 1ncx a.39.1.5 17223 2c9yA 242 8.14e+01 1kluD 239 8.16e+01 b.40.2.2,d.15.6.1 72728,72729 1bg5 254 8.20e+01 1b8xA a.45.1.1,c.47.1.5 17723,33017 1m7yA 435 8.21e+01 c.67.1.4 78761 1qrzA 246 8.21e+01 5ptp b.47.1.2 26366 1b8gA 429 8.25e+01 1b8gA c.67.1.4 34499 1osxA 61 8.41e+01 g.24.1.2 87391 1hqvA 191 8.42e+01 1hqvA a.39.1.8 61160 1a2xA 159 8.43e+01 1ncx a.39.1.5 17251 1p0t0 63 8.59e+01 1fnjA 127 8.66e+01 2chsA d.79.1.2 39776 1v5oA 102 8.71e+01 d.15.1.1 108381 1ynuA 473 8.73e+01 2amiA 96 8.97e+01