# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nxuA 333 2.13e-01 c.122.1.1 86389 1i58A 189 2.78e-01 1b3qA d.122.1.3 61773 1a3aA 148 3.34e-01 1a3aA d.112.1.1 40917 1jmsA 381 3.53e-01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1dk0A 188 3.61e-01 1b2vA d.35.1.1 38530 1fs1B 141 6.72e-01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1j8uA 325 8.76e-01 d.178.1.1 71611 1i4wA 353 8.77e-01 c.66.1.24 66028 1hlvA 131 1.24e+00 a.4.1.7,a.4.1.7 65854,65855 1q0rA 298 1.43e+00 c.69.1.28 95508 1cnzA 363 1.62e+00 1cnzA c.77.1.1 35061 1dp3A 55 1.94e+00 1dp3A a.55.1.2 59128 1m7yA 435 2.08e+00 c.67.1.4 78761 1vljA 407 2.44e+00 e.22.1.2 108832 1a7s 221 2.96e+00 1a7s b.47.1.2 26284 1ctj 89 3.83e+00 1ctj a.3.1.1 15798 1t4hA 290 3.85e+00 d.144.1.7 106420 1mgtA 174 4.28e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1gcvB 136 4.60e+00 1cg5B a.1.1.2 15589 1fcyA 236 4.61e+00 2lbd a.123.1.1 19282 1fiqC 763 4.71e+00 1fiqC d.41.1.1,d.133.1.1 38588,41418 1h8dH 260 5.69e+00 5ptp 1eljA 381 5.79e+00 4mbp c.94.1.1 35791 1cy5A 97 6.23e+00 1cy5A a.77.1.3 18430 1kwfA 363 6.23e+00 a.102.1.2 73078 1jy5A 212 6.34e+00 d.124.1.1 71940 1g8kA 825 6.68e+00 1g8jA b.52.2.2,c.81.1.1 26920,35328 1h8eD 482 7.92e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1cxqA 162 8.12e+00 1cxqA c.55.3.2 33621 1ockA 412 8.30e+00 c.117.1.1 86802 1a4pA 96 9.06e+00 1b4cA a.39.1.2 17176 1abv 134 9.11e+00 1abv a.70.1.1 18317 1pvmA 184 9.12e+00 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1dcs 311 1.06e+01 1dcs b.82.2.1 28124 1m65A 245 1.07e+01 c.6.3.1 84847 1jalA 363 1.12e+01 c.37.1.8,d.15.10.2 84138,84139 1fnnA 389 1.14e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1eo1A 124 1.18e+01 1eo1A c.55.5.1 33739 1p1mA 406 1.21e+01 b.92.1.4,c.1.9.9 87696,87697 1ddgA 374 1.25e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1pv5A 264 1.35e+01 d.251.1.1 95150 1ooeA 236 1.35e+01 c.2.1.2 87196 1xqoA 256 1.39e+01 2bjfA 329 1.48e+01 1mqvA 125 1.49e+01 a.24.3.2 79415 1ihgA 370 1.69e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1c7qA 445 1.80e+01 2pgi c.80.1.2 35307 1iugA 352 1.83e+01 c.67.1.3 90699 1bob 320 1.83e+01 1bob d.108.1.1 40816 1ojrA 274 1.90e+01 c.74.1.1 93147 1q7eA 428 1.99e+01 c.123.1.1 96035 1byrA 155 2.02e+01 1byrA d.136.1.1 41450 1jb9A 316 2.02e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1bn7A 294 2.03e+01 1bn6A c.69.1.8 34677 1ji7A 89 2.09e+01 a.60.1.1 71682 1fp1D 372 2.23e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1oxjA 173 2.29e+01 a.60.1.2,a.118.1.13 87517,87518 1a6m 151 2.37e+01 1a6m a.1.1.2 15018 1j75A 67 2.46e+01 a.4.5.19 62673 1gpeA 587 2.46e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1it2A 146 2.48e+01 a.1.1.2 66365 1v54H 85 2.61e+01 a.51.1.1 100329 1jk4A 89 2.64e+01 b.9.1.1 77130 1eq2A 310 2.66e+01 1eq2A c.2.1.2 29814 1e3oC 160 2.68e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1elvA 333 2.69e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1cjcA 460 2.74e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1j99A 293 2.78e+01 c.37.1.5 71618 1j6rA 214 2.81e+01 d.173.1.2 71598 1s2wA 295 2.84e+01 c.1.12.7 98407 1g4yB 101 2.85e+01 1g4yB f.15.1.1 60251 3seb 238 2.89e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1tqhA 247 2.93e+01 c.69.1.29 107225 1h3lA 87 2.96e+01 a.177.1.1 76639 1rrmA 386 2.97e+01 e.22.1.2 105081 1wmhB 86 3.00e+01 1h3nA 878 3.00e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1avsA 90 3.07e+01 1cll a.39.1.5 17226 1i5nA 146 3.11e+01 1i5nA a.24.10.3 61805 1bueA 265 3.12e+01 1btl e.3.1.1 42727 1olrA 224 3.14e+01 b.29.1.11 93330 1bqbA 301 3.15e+01 1hyt d.92.1.2 58962 1i7dA 659 3.35e+01 1d6mA e.10.1.1 61886 1jdpA 441 3.39e+01 c.93.1.1 62906 1r6jA 82 3.39e+01 b.36.1.1 97151 1ddjA 247 3.43e+01 5ptp b.47.1.2 26362 1dmhA 311 3.54e+01 1dmhA b.3.6.1 22633 1r5lA 262 3.60e+01 a.5.3.1,c.13.1.1 97099,97100 1g6hA 257 3.68e+01 1gajA c.37.1.12 60318 1gr0A 367 3.71e+01 c.2.1.3,d.81.1.3 70379,70380 1fexA 59 3.74e+01 a.4.1.3 59803 1g73A 162 3.74e+01 1fewA a.7.4.1 16332 1wvfA 520 3.74e+01 1hw1A 239 3.74e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1v5vA 401 3.80e+01 1qy1A 174 3.87e+01 b.60.1.1 96568 1tl9A 339 3.95e+01 1guxB 152 3.95e+01 1guxB a.74.1.3 18389 1ls9A 91 3.99e+01 a.3.1.1 78177 1lqtA 456 4.09e+01 c.3.1.1,c.4.1.1 74198,74199 1jcfA 344 4.10e+01 c.55.1.1,c.55.1.1 62878,62879 1qxyA 252 4.11e+01 d.127.1.1 96565 1sgwA 214 4.41e+01 c.37.1.12 105541 1izcA 339 4.43e+01 c.1.12.5 83838 1b4pA 217 4.55e+01 a.45.1.1,c.47.1.5 83158,83159 1gjnA 153 4.72e+01 a.1.1.2 70191 1c8uA 285 4.73e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1dqzA 280 4.81e+01 1dqyA c.69.1.3 34638 1u60A 310 4.81e+01 e.3.1.2 107692 1vjvA 415 4.89e+01 d.3.1.9 108632 1ym3A 215 5.03e+01 1io0A 185 5.17e+01 c.10.1.1 76753 1ju2A 536 5.17e+01 c.3.1.2,d.16.1.1 77169,77170 1hkhA 279 5.24e+01 c.69.1.12 90628 1g2nA 264 5.28e+01 1lbd a.123.1.1 60227 1dugA 234 5.34e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1b3aA 67 5.39e+01 1b3aA d.9.1.1 37410 1ja9A 274 5.45e+01 c.2.1.2 62817 1im5A 180 5.49e+01 c.33.1.3 66211 1cunA 213 5.63e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1g291 372 5.86e+01 1g291 1exrA 148 5.94e+01 1cll a.39.1.5 17299 1mr7A 209 6.01e+01 b.81.1.3 91430 1idrA 136 6.03e+01 1dlyA a.1.1.1 62301 1bkrA 109 6.08e+01 1bkrA a.40.1.1 17394 1am9A 82 6.11e+01 1am9A a.38.1.1 17140 1ydyA 356 6.19e+01 1e6cA 173 6.26e+01 1shkA c.37.1.2 59296 1jo0A 98 6.33e+01 d.68.4.1 77140 1aquA 297 6.35e+01 1aquA c.37.1.5 31942 1efnB 152 6.35e+01 1efnB d.102.1.1 40699 1fp2A 352 6.43e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 2nlrA 234 6.48e+01 2nlrA b.29.1.11 24344 1ox0A 430 6.49e+01 c.95.1.1,c.95.1.1 87495,87496 1b43A 340 6.50e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1j2zA 270 6.53e+01 b.81.1.1 90805 1c52 131 6.54e+01 1c52 a.3.1.1 15810 1buoA 121 6.54e+01 1buoA d.42.1.1 38631 1g2cB 43 6.66e+01 1g2cB 1fqiA 147 6.72e+01 1agrE a.91.1.1 18542 1h6gA 256 6.78e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 1ivnA 190 6.84e+01 c.23.10.5 83719 1c02A 166 6.97e+01 1qspA a.24.10.2 16633 1pe1A 267 7.00e+01 c.1.10.4 94591 1g3qA 237 7.07e+01 1hyqA c.37.1.10 60237 1pyoB 105 7.28e+01 1jkmB 361 7.30e+01 1jkmA c.69.1.2 34634 1senA 164 7.38e+01 c.47.1.1 105465 1ejxA 100 7.43e+01 d.8.1.1 83182 1g7nA 131 7.48e+01 b.60.1.2 83274 1elkA 157 7.49e+01 1dvpA a.118.9.2 19217 1ispA 181 7.59e+01 c.69.1.18 76778 1ccr 112 7.62e+01 1ycc a.3.1.1 15877 1fnd 314 7.67e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1f20A 435 7.88e+01 b.43.4.1,c.25.1.4 64932,64933 1bw0A 416 7.88e+01 1bw0A c.67.1.1 34385 1ee4A 423 7.90e+01 1ee4A a.118.1.1 19128 1p5zB 263 7.99e+01 c.37.1.1 87815 1huw 166 8.14e+01 1huw a.26.1.1 16831 4ubpA 101 8.30e+01 1ubpA d.8.1.1 37352 1sfxA 109 8.35e+01 a.4.5.50 105505 1el5A 389 8.37e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 2evaA 307 8.48e+01 1avoA 60 8.53e+01 1avoA a.24.8.1 16619 1fseA 74 8.59e+01 1fseA a.4.6.2 60000 1kq3A 376 8.61e+01 e.22.1.2 68790 1hn4A 131 8.68e+01 a.133.1.2 65893 1h54A 754 8.85e+01 a.102.1.4,b.30.5.3 60634,60635