# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i4wA 353 1.35e-01 c.66.1.24 66028 1fs1B 141 1.44e-01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1i58A 189 1.71e-01 1b3qA d.122.1.3 61773 1nxuA 333 2.60e-01 c.122.1.1 86389 1dk0A 188 2.75e-01 1b2vA d.35.1.1 38530 1g8kA 825 4.20e-01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1kaeA 434 6.38e-01 c.82.1.2 72247 1eljA 381 8.53e-01 4mbp c.94.1.1 35791 1a3aA 148 8.93e-01 1a3aA d.112.1.1 40917 1psrA 100 1.34e+00 1psrA a.39.1.2 17180 1fnnA 389 1.38e+00 1fnnA a.4.5.11,c.37.1.20 16129,32426 1m7yA 435 1.38e+00 c.67.1.4 78761 1kwfA 363 1.46e+00 a.102.1.2 73078 1jmsA 381 1.52e+00 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1cnzA 363 1.56e+00 1cnzA c.77.1.1 35061 1fiqC 763 1.74e+00 1fiqC d.41.1.1,d.133.1.1 38588,41418 1j8uA 325 2.30e+00 d.178.1.1 71611 1avsA 90 2.33e+00 1cll a.39.1.5 17226 1h8dH 260 2.66e+00 5ptp 1a4pA 96 2.66e+00 1b4cA a.39.1.2 17176 1vljA 407 2.95e+00 e.22.1.2 108832 1f20A 435 2.95e+00 b.43.4.1,c.25.1.4 64932,64933 1pyoB 105 3.12e+00 1ggzA 148 3.31e+00 a.39.1.5 70176 2bjfA 329 3.48e+00 1p1mA 406 3.83e+00 b.92.1.4,c.1.9.9 87696,87697 1hlvA 131 3.93e+00 a.4.1.7,a.4.1.7 65854,65855 1g6hA 257 4.24e+00 1gajA c.37.1.12 60318 1fp1D 372 5.40e+00 1fpqA a.4.5.29,c.66.1.12 59939,59940 1cy5A 97 5.47e+00 1cy5A a.77.1.3 18430 1jy5A 212 5.50e+00 d.124.1.1 71940 1iugA 352 5.64e+00 c.67.1.3 90699 1c8uA 285 5.81e+00 1c8uA d.38.1.3,d.38.1.3 38547,38548 1jalA 363 6.06e+00 c.37.1.8,d.15.10.2 84138,84139 1m65A 245 6.55e+00 c.6.3.1 84847 1mgtA 174 6.56e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1dp3A 55 6.79e+00 1dp3A a.55.1.2 59128 1abv 134 6.80e+00 1abv a.70.1.1 18317 1j6rA 214 6.89e+00 d.173.1.2 71598 1j75A 67 6.97e+00 a.4.5.19 62673 1q7eA 428 7.13e+00 c.123.1.1 96035 1elvA 333 7.16e+00 5ptp b.47.1.2,g.18.1.1 59454,59455 1c7nA 399 7.45e+00 1d2fA c.67.1.3 34413 1fp2A 352 7.48e+00 1fpxA a.4.5.29,c.66.1.12 59941,59942 1mqvA 125 7.50e+00 a.24.3.2 79415 1wmhB 86 7.51e+00 1cfzA 162 8.15e+00 1cfzA c.56.1.1 33754 1s2wA 295 8.31e+00 c.1.12.7 98407 1iktA 120 8.34e+00 d.106.1.1 66188 1exrA 148 8.44e+00 1cll a.39.1.5 17299 1b3aA 67 8.48e+00 1b3aA d.9.1.1 37410 1dmhA 311 8.59e+00 1dmhA b.3.6.1 22633 1d2zB 153 8.79e+00 1d2zB a.77.1.2 18439 1e6cA 173 8.96e+00 1shkA c.37.1.2 59296 1dcs 311 9.08e+00 1dcs b.82.2.1 28124 1e8aA 91 9.29e+00 1b4cA a.39.1.2 17188 1xqoA 256 9.36e+00 1h3lA 87 9.43e+00 a.177.1.1 76639 1kq3A 376 9.85e+00 e.22.1.2 68790 1m45A 148 9.97e+00 a.39.1.5 78598 1g2nA 264 1.02e+01 1lbd a.123.1.1 60227 1h8eD 482 1.03e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1hufA 140 1.07e+01 1hufA d.195.1.1 61272 1afwA 393 1.07e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1wouA 123 1.17e+01 c.47.1.16 109471 1ecmA 109 1.22e+01 1ecmA a.130.1.1 19492 1sgwA 214 1.27e+01 c.37.1.12 105541 1k94A 165 1.28e+01 a.39.1.8 68333 3seb 238 1.29e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1ju2A 536 1.32e+01 c.3.1.2,d.16.1.1 77169,77170 1r5lA 262 1.40e+01 a.5.3.1,c.13.1.1 97099,97100 1n8vA 112 1.40e+01 a.118.21.1 85457 1t4hA 290 1.44e+01 d.144.1.7 106420 1alvA 173 1.48e+01 1alvA a.39.1.8 17370 1ra0A 430 1.49e+01 1olrA 224 1.52e+01 b.29.1.11 93330 1it2A 146 1.55e+01 a.1.1.2 66365 1a7s 221 1.56e+01 1a7s b.47.1.2 26284 1h0hB 214 1.56e+01 d.58.1.5 76437 1ydyA 356 1.57e+01 1i7dA 659 1.59e+01 1d6mA e.10.1.1 61886 1r5rA 119 1.63e+01 a.39.2.1 97104 1gxmA 332 1.65e+01 a.102.5.1 76371 1wmaA 276 1.69e+01 1ddgA 374 1.71e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 2sak 121 1.75e+01 2sak d.15.5.1 37711 1cpt 412 1.87e+01 1cpt a.104.1.1 18968 1wr8A 231 1.87e+01 1rtqA 299 1.96e+01 c.56.5.4 97819 1pp0A 199 1.96e+01 d.103.1.1 104211 1c02A 166 2.01e+01 1qspA a.24.10.2 16633 1qxyA 252 2.03e+01 d.127.1.1 96565 1ng6A 148 2.09e+01 a.182.1.1 85670 1d2fA 390 2.11e+01 1d2fA c.67.1.3 34411 1x7dA 350 2.13e+01 1cxqA 162 2.15e+01 1cxqA c.55.3.2 33621 1fcyA 236 2.21e+01 2lbd a.123.1.1 19282 1guxB 152 2.21e+01 1guxB a.74.1.3 18389 1cjxA 357 2.22e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1rkqA 282 2.23e+01 c.108.1.10 97621 1j09A 468 2.23e+01 a.97.1.1,c.26.1.1 77025,77026 1o54A 277 2.23e+01 c.66.1.13 92482 1nz0A 118 2.26e+01 d.14.1.2 86433 1hr6A 475 2.26e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1pvmA 184 2.29e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1fexA 59 2.32e+01 a.4.1.3 59803 1fseA 74 2.38e+01 1fseA a.4.6.2 60000 1xx1A 285 2.49e+01 1dj7A 117 2.52e+01 1dj7A g.36.1.1 44997 1qy1A 174 2.54e+01 b.60.1.1 96568 1eq2A 310 2.56e+01 1eq2A c.2.1.2 29814 1kqpA 271 2.59e+01 c.26.2.1 72883 1bu6O 501 2.60e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1u60A 310 2.63e+01 e.3.1.2 107692 1ks9A 291 2.65e+01 a.100.1.7,c.2.1.6 68857,68858 1vhwA 253 2.69e+01 c.56.2.1 100706 1bh9B 89 2.71e+01 1bh9B a.22.1.3 16485 1dugA 234 2.71e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1go3F 107 2.79e+01 a.60.8.2 65407 1mzbA 136 2.88e+01 a.4.5.42 91497 1io0A 185 2.89e+01 c.10.1.1 76753 1e85A 127 2.92e+01 1bbhA a.24.3.2 16549 1whzA 70 2.92e+01 1jcfA 344 2.99e+01 c.55.1.1,c.55.1.1 62878,62879 1ejxA 100 2.99e+01 d.8.1.1 83182 1jb9A 316 3.01e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1c52 131 3.02e+01 1c52 a.3.1.1 15810 1gtmA 419 3.18e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1usgA 346 3.20e+01 c.93.1.1 99864 1bob 320 3.23e+01 1bob d.108.1.1 40816 1vrmA 325 3.23e+01 1g5aA 628 3.31e+01 b.71.1.1,c.1.8.1 65152,65153 1tn6A 382 3.39e+01 1amf 233 3.41e+01 1wod c.94.1.1 35833 1dp7P 76 3.42e+01 1dp7P a.4.5.20 16159 1i1nA 226 3.49e+01 c.66.1.7 71102 1geqA 248 3.54e+01 2tysA c.1.2.4 28589 1jubA 311 3.59e+01 c.1.4.1 90908 1vpdA 299 3.63e+01 1bl0A 129 3.74e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1uwkA 557 3.76e+01 e.51.1.1 108065 1e7uA 961 3.76e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1eg5A 384 3.80e+01 1ecxA c.67.1.3 34429 1ojrA 274 3.83e+01 c.74.1.1 93147 1oxjA 173 3.85e+01 a.60.1.2,a.118.1.13 87517,87518 1wjxA 122 3.85e+01 1ddjA 247 3.86e+01 5ptp b.47.1.2 26362 1q0rA 298 3.88e+01 c.69.1.28 95508 1js1X 324 3.90e+01 c.78.1.1,c.78.1.1 71834,71835 1jbeA 128 3.92e+01 3chy c.23.1.1 62845 1gr0A 367 3.97e+01 c.2.1.3,d.81.1.3 70379,70380 1byrA 155 3.98e+01 1byrA d.136.1.1 41450 1j99A 293 4.07e+01 c.37.1.5 71618 1c7qA 445 4.09e+01 2pgi c.80.1.2 35307 1b25A 619 4.15e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1wy2A 351 4.18e+01 1l8rA 101 4.23e+01 a.6.1.4 73700 1eayC 74 4.24e+01 1eayC d.58.24.1 39386 1dq3A 454 4.25e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1jjfA 268 4.27e+01 c.69.1.2 66765 1b00A 127 4.36e+01 3chy c.23.1.1 31122 1hx1B 114 4.45e+01 1hx1B a.7.7.1 61350 1v4vA 376 4.45e+01 c.87.1.3 100313 1ig5A 75 4.51e+01 4icb a.39.1.1 62363 1b4pA 217 4.54e+01 a.45.1.1,c.47.1.5 83158,83159 1jd1A 129 4.55e+01 1qu9A d.79.1.1 62890 1jkmB 361 4.64e+01 1jkmA c.69.1.2 34634 1s9uA 207 4.64e+01 a.184.1.1 105390 1czaN 917 4.65e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1fiuA 286 4.75e+01 1fiuA c.52.1.10 33317 1bx1A 314 4.78e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 2db3A 434 4.79e+01 1v54H 85 4.84e+01 a.51.1.1 100329 1c75A 71 4.89e+01 451c a.3.1.1 15796 1senA 164 4.95e+01 c.47.1.1 105465 1k1eA 180 4.97e+01 c.108.1.5 67995 1fs7A 485 4.98e+01 1qdbA a.138.1.3 19691 1wvfA 520 5.00e+01 1im5A 180 5.12e+01 c.33.1.3 66211 1ro0A 216 5.14e+01 d.264.1.2 97664 1el5A 389 5.14e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1wl4A 397 5.15e+01 1gcvB 136 5.17e+01 1cg5B a.1.1.2 15589 1sqsA 242 5.18e+01 c.23.5.5 98968 1bqbA 301 5.23e+01 1hyt d.92.1.2 58962 1jo0A 98 5.29e+01 d.68.4.1 77140 1n8kA 374 5.32e+01 b.35.1.2,c.2.1.1 80298,80299 1ecfA 504 5.36e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1guzA 310 5.40e+01 c.2.1.5,d.162.1.1 65586,65587 1jnrA 643 5.48e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 16vpA 366 5.52e+01 16vpA d.180.1.1 42601 1ctj 89 5.53e+01 1ctj a.3.1.1 15798 1ezwA 349 5.64e+01 1ezwA c.1.16.3 29558 1vqsA 116 5.65e+01 4ubpA 101 5.67e+01 1ubpA d.8.1.1 37352 1jbkA 195 5.71e+01 c.37.1.20 71631 2gfgA 193 5.74e+01 1enfA 212 5.76e+01 3seb b.40.2.2,d.15.6.1 25198,37787 1e43A 483 5.81e+01 1bli b.71.1.1,c.1.8.1 59217,59218 1nrjB 218 5.81e+01 c.37.1.8 86125 1h3gA 601 5.88e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1eyhA 144 5.88e+01 1eduA a.118.9.1 19214 1fnd 314 5.99e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1g4yB 101 6.01e+01 1g4yB f.15.1.1 60251 1dkiA 371 6.07e+01 1dkiA d.3.1.1 37090 1qwgA 251 6.08e+01 c.1.27.1 96473 1jx6A 342 6.08e+01 c.93.1.1 67406 1es9A 232 6.13e+01 1wab c.23.10.3 31340 1elkA 157 6.17e+01 1dvpA a.118.9.2 19217 1bueA 265 6.19e+01 1btl e.3.1.1 42727 1bw0A 416 6.22e+01 1bw0A c.67.1.1 34385 1r26A 125 6.23e+01 c.47.1.1 96847 1zelA 298 6.25e+01 1ee4A 423 6.28e+01 1ee4A a.118.1.1 19128 7a3hA 303 6.29e+01 7a3hA c.1.8.3 28817 1ltzA 297 6.35e+01 d.178.1.1 74254 1qe3A 489 6.37e+01 2bce c.69.1.1 34630 1g5hA 454 6.47e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1f0nA 285 6.51e+01 1dqyA c.69.1.3 34636 1tu9A 134 6.54e+01 a.1.1.2 107320 1umkA 275 6.55e+01 1jq5A 370 6.57e+01 e.22.1.2 67084 1fmjA 351 6.59e+01 c.37.1.5 59879 1dz3A 130 6.67e+01 1dz3A c.23.1.1 31105 1tqhA 247 6.68e+01 c.69.1.29 107225 1vjvA 415 6.68e+01 d.3.1.9 108632 1xk7A 408 6.70e+01 1bm9A 122 6.71e+01 1bm9A a.4.5.7 16116 1p5zB 263 6.73e+01 c.37.1.1 87815 2nlrA 234 6.78e+01 2nlrA b.29.1.11 24344 1g291 372 6.81e+01 1g291 1i5nA 146 6.82e+01 1i5nA a.24.10.3 61805 1gpeA 587 6.84e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1yc5A 246 6.84e+01 1ym3A 215 6.86e+01 1jk7A 323 6.88e+01 1auiA d.159.1.3 63144 1d3yA 301 6.89e+01 1d3yA e.12.1.1 43252 1k8uA 90 6.89e+01 a.39.1.2 72181 1hw1A 239 7.07e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1d7uA 433 7.14e+01 2dkb c.67.1.4 34439 1b8aA 438 7.21e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1g0cA 364 7.28e+01 7a3hA c.1.8.3 60165 1hkhA 279 7.32e+01 c.69.1.12 90628 1d3gA 367 7.39e+01 1d3gA c.1.4.1 28600 1xkrA 206 7.40e+01 1eerA 166 7.42e+01 1eerA a.26.1.2 16846 1eo1A 124 7.44e+01 1eo1A c.55.5.1 33739 1fg7A 356 7.44e+01 1gewA c.67.1.1 59819 1vyrA 364 7.59e+01 c.1.4.1 108906 1b0uA 262 7.60e+01 1b0uA c.37.1.12 32370 1sg6A 393 7.61e+01 e.22.1.1 105522 1xkzA 255 7.65e+01 2evaA 307 7.72e+01 1dvoA 152 7.76e+01 1dvoA a.136.1.1 19623 1a41 234 7.77e+01 1a41 d.163.1.2 42174 1jsuC 84 7.98e+01 1jsuC j.55.1.1 46339 1f7cA 231 8.00e+01 1f7cA a.116.1.1 19107 1feuA 206 8.02e+01 1feuA b.53.1.1 59801 1jdw 423 8.03e+01 1jdw d.126.1.2 41129 1a8o 70 8.05e+01 1a8o a.28.3.1 16953 1dqaA 467 8.08e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1oaiA 59 8.16e+01 a.5.2.3 81255 1j55A 95 8.21e+01 a.39.1.2 77078 1h6gA 256 8.21e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 1idrA 136 8.22e+01 1dlyA a.1.1.1 62301 1bkrA 109 8.22e+01 1bkrA a.40.1.1 17394 1eteA 134 8.28e+01 1eteA a.26.1.2 16869 1ny1A 240 8.38e+01 c.6.2.3 86395 1orrA 347 8.39e+01 c.2.1.2 93460 1k20A 310 8.45e+01 c.107.1.1 68027 1v2zA 111 8.50e+01 a.186.1.1 108300 1pdo 135 8.52e+01 1pdo c.54.1.1 33376 2bhuA 602 8.56e+01 1fc4A 401 8.56e+01 1bs0A c.67.1.4 59760 1g8iA 190 8.57e+01 1rec a.39.1.5 60363 1csn 298 8.62e+01 1csn d.144.1.7 41664 1vfjA 116 8.63e+01 1vmeA 410 8.65e+01 c.23.5.1,d.157.1.3 108893,108894 1ep3A 311 8.66e+01 2dorA c.1.4.1 28597 1iybA 208 8.76e+01 d.124.1.1 90720 1e4cP 215 8.79e+01 2fua c.74.1.1 34969 3sdhA 146 8.83e+01 3sdhA a.1.1.2 14984 1bcpB 199 8.83e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1tfe 145 8.87e+01 1tfe d.43.1.1 38680 1bco 327 8.88e+01 1bco b.48.1.1,c.55.3.3 26431,33676