# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dk0A 188 8.62e-01 1b2vA d.35.1.1 38530 1hlvA 131 1.47e+00 a.4.1.7,a.4.1.7 65854,65855 1a8y 367 1.94e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1h8dH 260 2.14e+00 5ptp 1fs1B 141 2.78e+00 1vcbB a.157.1.1,d.42.1.1 19252,38664 1i4wA 353 3.53e+00 c.66.1.24 66028 1a7s 221 5.71e+00 1a7s b.47.1.2 26284 1h0hB 214 7.48e+00 d.58.1.5 76437 1ctj 89 7.51e+00 1ctj a.3.1.1 15798 1i58A 189 7.59e+00 1b3qA d.122.1.3 61773 1q7eA 428 7.94e+00 c.123.1.1 96035 1psrA 100 8.69e+00 1psrA a.39.1.2 17180 1dmhA 311 9.39e+00 1dmhA b.3.6.1 22633 1jy5A 212 9.79e+00 d.124.1.1 71940 1a3aA 148 9.81e+00 1a3aA d.112.1.1 40917 1g2hA 61 1.03e+01 1g2hA a.4.1.12 60224 1k0hA 117 1.04e+01 b.106.1.2 71975 1jmsA 381 1.12e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1avsA 90 1.17e+01 1cll a.39.1.5 17226 1v54H 85 1.18e+01 a.51.1.1 100329 1m65A 245 1.22e+01 c.6.3.1 84847 1kaeA 434 1.34e+01 c.82.1.2 72247 1g2bA 62 1.40e+01 1tud b.34.2.1 24488 1r6jA 82 1.42e+01 b.36.1.1 97151 2sak 121 1.44e+01 2sak d.15.5.1 37711 1dq3A 454 1.44e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1exrA 148 1.58e+01 1cll a.39.1.5 17299 1cpt 412 1.76e+01 1cpt a.104.1.1 18968 1avoA 60 1.77e+01 1avoA a.24.8.1 16619 1ls9A 91 1.82e+01 a.3.1.1 78177 1elvA 333 1.82e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1mqvA 125 1.84e+01 a.24.3.2 79415 1n8vA 112 1.87e+01 a.118.21.1 85457 1a64A 97 2.09e+01 1cdcA b.1.1.1 19750 1g6hA 257 2.27e+01 1gajA c.37.1.12 60318 1ecmA 109 2.43e+01 1ecmA a.130.1.1 19492 1xx1A 285 2.44e+01 1nkr 201 2.60e+01 1nkr b.1.1.4,b.1.1.4 21799,21800 1g2cB 43 2.69e+01 1g2cB 1e3oC 160 2.74e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1cy5A 97 2.91e+01 1cy5A a.77.1.3 18430 1m1nB 522 2.92e+01 c.92.2.3 78418 1jk7A 323 3.30e+01 1auiA d.159.1.3 63144 1rqpA 299 3.38e+01 b.141.1.1,c.132.1.1 97754,97755 1fseA 74 3.42e+01 1fseA a.4.6.2 60000 1bn7A 294 3.59e+01 1bn6A c.69.1.8 34677 1dcs 311 3.73e+01 1dcs b.82.2.1 28124 1dp7P 76 3.74e+01 1dp7P a.4.5.20 16159 2f42A 179 3.81e+01 1gcvB 136 3.93e+01 1cg5B a.1.1.2 15589 1ypyA 184 4.13e+01 1gteA 1025 4.17e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1h6gA 256 4.45e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 1aisA 182 4.46e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1c7qA 445 4.53e+01 2pgi c.80.1.2 35307 1ixcA 294 4.54e+01 a.4.5.37,c.94.1.1 83764,83765 1k20A 310 4.59e+01 c.107.1.1 68027 1ygtA 111 4.67e+01 1nxuA 333 4.77e+01 c.122.1.1 86389 1a4pA 96 4.86e+01 1b4cA a.39.1.2 17176 1gdvA 85 5.05e+01 1ctj a.3.1.1 60458 1pvgA 418 5.13e+01 d.14.1.3,d.122.1.2 95161,95162 1dszA 86 5.18e+01 2nllB g.39.1.2 45129 1jalA 363 5.34e+01 c.37.1.8,d.15.10.2 84138,84139 1eljA 381 5.40e+01 4mbp c.94.1.1 35791 1oa8A 133 5.60e+01 b.145.1.1 92698 1h3nA 878 5.60e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1b3aA 67 5.62e+01 1b3aA d.9.1.1 37410 1qy1A 174 5.63e+01 b.60.1.1 96568 1kveA 63 5.68e+01 1kveA d.70.1.2 39590 1jovA 270 5.70e+01 b.30.5.7 84192 1cxqA 162 5.77e+01 1cxqA c.55.3.2 33621 1mdc 133 5.79e+01 1hmt b.60.1.2 27198 1l3lA 234 5.97e+01 a.4.6.2,d.110.5.1 73541,73542 1vljA 407 6.14e+01 e.22.1.2 108832 1ukkA 142 6.18e+01 d.227.1.1 99491 1eyhA 144 6.20e+01 1eduA a.118.9.1 19214 1m45A 148 6.22e+01 a.39.1.5 78598 1pvmA 184 6.48e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1g8pA 350 6.52e+01 1g8pA c.37.1.20 60376 1tfzA 424 6.58e+01 d.32.1.3,d.32.1.3 106886,106887 1g79A 218 6.71e+01 1ci0A b.45.1.1 25752 1brwA 433 6.83e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1dl5A 317 6.84e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1gr0A 367 6.88e+01 c.2.1.3,d.81.1.3 70379,70380 1bby 69 6.92e+01 2bby a.4.5.15 16149 1l8bA 190 6.94e+01 d.86.1.1 73683 1uuzA 137 7.11e+01 d.233.1.1 100024 1j1jA 240 7.33e+01 a.118.16.1 90762 1jy2O 56 7.34e+01 h.1.8.1 67441 1fexA 59 7.49e+01 a.4.1.3 59803 1fjlA 81 7.52e+01 2hddA a.4.1.1 16017 1qj4A 257 7.76e+01 1qj4A c.69.1.20 34796 1ispA 181 7.79e+01 c.69.1.18 76778 1jkmB 361 7.86e+01 1jkmA c.69.1.2 34634 1d2vA 104 7.88e+01 1d2vA a.93.1.2 18697 1fiqC 763 7.90e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1oxjA 173 7.92e+01 a.60.1.2,a.118.1.13 87517,87518 1mgtA 174 8.08e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1rm6A 769 8.29e+01 1fp1D 372 8.34e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 2arcA 164 8.44e+01 2arcA b.82.4.1 28148 1tmxA 293 8.49e+01 1khxA 227 8.69e+01 b.26.1.1 68631 1elkA 157 8.79e+01 1dvpA a.118.9.2 19217 1ecrA 309 8.82e+01 1ecrA e.2.1.1 42678 1h3lA 87 8.83e+01 a.177.1.1 76639 1v8cA 168 8.94e+01 d.15.3.1,d.129.5.1 100495,100496 1u60A 310 8.96e+01 e.3.1.2 107692