# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zq9A 285 4.18e-29 1a3aA 148 1.73e-01 1a3aA d.112.1.1 40917 1nxuA 333 4.50e-01 c.122.1.1 86389 2f4lA 297 6.39e-01 1fs1B 141 8.17e-01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1xclA 235 8.97e-01 1mvwC 147 1.25e+00 i.15.1.1 79525 1jmsA 381 1.45e+00 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1j8uA 325 1.72e+00 d.178.1.1 71611 1y82A 157 2.04e+00 1vb3A 428 2.20e+00 1zrn 232 2.24e+00 1qq5A c.108.1.1 43323 1lvaA 258 2.68e+00 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1xqoA 256 2.89e+00 1gcvB 136 3.67e+00 1cg5B a.1.1.2 15589 1cnzA 363 3.87e+00 1cnzA c.77.1.1 35061 1p1cA 199 4.00e+00 c.66.1.16 87669 4pah 308 4.43e+00 4pah d.178.1.1 42576 1wwiA 148 4.44e+00 2ch4A 320 4.69e+00 1s5lA 344 4.75e+00 2ax3A 502 4.79e+00 1p1mA 406 5.42e+00 b.92.1.4,c.1.9.9 87696,87697 1j6pA 418 5.45e+00 b.92.1.4,c.1.9.9 77089,77090 1i4wA 353 6.19e+00 c.66.1.24 66028 1t4hA 290 6.47e+00 d.144.1.7 106420 2bjfA 329 6.79e+00 2awpA 198 7.95e+00 1dp3A 55 7.95e+00 1dp3A a.55.1.2 59128 1y1xA 191 8.73e+00 2ba2A 85 8.85e+00 1dk0A 188 9.33e+00 1b2vA d.35.1.1 38530 1hlvA 131 9.99e+00 a.4.1.7,a.4.1.7 65854,65855 1v97A 1332 1.02e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1ynuA 473 1.03e+01 2azqA 311 1.06e+01 1zx0A 236 1.08e+01 1mlwA 301 1.09e+01 d.178.1.1 79289 1m7yA 435 1.12e+01 c.67.1.4 78761 1q8cA 151 1.13e+01 a.79.1.2 96202 1fo4A 1332 1.19e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 17910,37695,38586,40227,41416,41758 1p57B 255 1.21e+01 b.47.1.2 94126 1i58A 189 1.23e+01 1b3qA d.122.1.3 61773 1cy5A 97 1.36e+01 1cy5A a.77.1.3 18430 1lqtA 456 1.39e+01 c.3.1.1,c.4.1.1 74198,74199 1vljA 407 1.45e+01 e.22.1.2 108832 1mgtA 174 1.46e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1w33A 181 1.47e+01 1yf3A 259 1.49e+01 1wy1A 172 1.51e+01 1q0sA 259 1.53e+01 c.66.1.28 95509 1h8dH 260 1.53e+01 5ptp 1w36B 1180 1.58e+01 1cjgA 62 1.61e+01 1pru a.35.1.5 17112 1mym 154 1.66e+01 1a6m a.1.1.2 15054 1a7s 221 1.68e+01 1a7s b.47.1.2 26284 1senA 164 1.72e+01 c.47.1.1 105465 2cwyA 94 1.80e+01 2byjA 439 1.81e+01 2oatA 439 1.82e+01 2dkb c.67.1.4 34452 1i5nA 146 1.83e+01 1i5nA a.24.10.3 61805 2bylA 439 1.84e+01 2fm9A 215 1.92e+01 1eljA 381 1.97e+01 4mbp c.94.1.1 35791 1mll 154 1.98e+01 1a6m a.1.1.2 15057 1v96A 149 1.98e+01 1wy6A 172 2.02e+01 1yadA 221 2.02e+01 1tffA 234 2.04e+01 d.3.1.11 106854 1b8gA 429 2.05e+01 1b8gA c.67.1.4 34499 2mgb 154 2.10e+01 1a6m a.1.1.2 15102 1ockA 412 2.11e+01 c.117.1.1 86802 1mod 154 2.19e+01 1a6m a.1.1.2 15107 1onqA 283 2.21e+01 b.1.1.2,d.19.1.1 93365,93366 1ton 235 2.28e+01 5ptp b.47.1.2 26307 1mlo 154 2.31e+01 1a6m a.1.1.2 15085 1oatA 439 2.33e+01 2dkb c.67.1.4 34461 2g7gA 213 2.34e+01 2spl 154 2.35e+01 1a6m a.1.1.2 15047 1q0rA 298 2.38e+01 c.69.1.28 95508 2a5vA 213 2.41e+01 1h3lA 87 2.47e+01 a.177.1.1 76639 1g8kA 825 2.50e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1qyrA 252 2.63e+01 c.66.1.24 104657 2bcqA 335 2.75e+01 103m 154 2.77e+01 1a6m a.1.1.2 15124 2mgg 154 2.83e+01 1a6m a.1.1.2 15069 2fh5A 185 2.88e+01 1sh7A 284 2.99e+01 2fz4A 237 3.05e+01 1q16C 225 3.09e+01 f.21.3.1 95549 1mlg 154 3.18e+01 1a6m a.1.1.2 15104 2f62A 161 3.26e+01 2gfnA 209 3.26e+01 2a0kA 161 3.29e+01 2f2tA 161 3.29e+01 1bzpA 153 3.31e+01 1a6m a.1.1.2 15020 1y1pA 342 3.32e+01 1x3sA 195 3.33e+01 2ethA 154 3.43e+01 2furA 209 3.48e+01 1rwtA 232 3.48e+01 f.43.1.1 97992 1j75A 67 3.56e+01 a.4.5.19 62673 1t3cA 421 3.60e+01 d.92.1.7 106343 1y5iC 225 3.60e+01 1rrmA 386 3.63e+01 e.22.1.2 105081 1ujmA 342 3.64e+01 1vsd 152 3.66e+01 1cxqA c.55.3.2 33625 1g2nA 264 3.71e+01 1lbd a.123.1.1 60227 1bu6O 501 3.79e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1ym3A 215 3.82e+01 1wmhB 86 3.83e+01 1ioj 57 3.87e+01 1ioj j.39.1.1 46293 1mwyA 73 3.91e+01 d.58.17.1 79616 1mbxC 106 3.99e+01 d.45.1.2 78929 1vi0A 206 4.15e+01 a.4.1.9,a.121.1.1 100720,100721 2bjcA 62 4.16e+01 1wmbA 260 4.19e+01 1vjvA 415 4.21e+01 d.3.1.9 108632 1bob 320 4.34e+01 1bob d.108.1.1 40816 1jalA 363 4.35e+01 c.37.1.8,d.15.10.2 84138,84139 1r6oC 106 4.36e+01 1fiqC 763 4.36e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1o1xA 155 4.50e+01 c.121.1.1 86553 1kb9I 55 4.60e+01 f.23.14.1 77324 1ezvI 55 4.61e+01 1be3J f.23.14.1 59553 1zu4A 320 4.62e+01 1eg7A 557 4.68e+01 1eg7A c.37.1.10 32241 1huw 166 4.76e+01 1huw a.26.1.1 16831 1q0vA 81 4.80e+01 j.105.1.1 95514 2btoA 473 4.90e+01 1xvjA 109 4.93e+01 1abv 134 4.94e+01 1abv a.70.1.1 18317 1oa4A 222 4.95e+01 b.29.1.11 86731 1cjcA 460 5.09e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1dmhA 311 5.10e+01 1dmhA b.3.6.1 22633 1e3oC 160 5.21e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 2cruA 118 5.29e+01 1q5qA 259 5.39e+01 d.153.1.4 95904 1br1B 150 5.39e+01 1wdcC a.39.1.5 17309 1sczA 233 5.41e+01 c.43.1.1 98802 1mijA 152 5.49e+01 a.4.1.1 79150 1zlqA 502 5.57e+01 1a6m 151 5.58e+01 1a6m a.1.1.2 15018 1rwyA 109 5.60e+01 a.39.1.4 98002 1zcoA 262 5.60e+01 2anxA 146 5.66e+01 1scuA 288 5.83e+01 2scuA c.2.1.8,c.23.4.1 30307,31135 1xg7A 250 5.93e+01 1p35A 299 5.98e+01 1p35A b.28.1.1 23925 1i7dA 659 5.98e+01 1d6mA e.10.1.1 61886 1uiuA 502 6.03e+01 c.94.1.1 99434 2d2mC 147 6.07e+01 1sd4A 126 6.07e+01 a.4.5.39 105428 2b9lA 394 6.09e+01 1tag 324 6.11e+01 1cipA a.66.1.1,c.37.1.8 18197,32080 2aa1A 144 6.27e+01 1qcwA 410 6.31e+01 1gox c.1.4.1 28622 1lmzA 187 6.34e+01 a.96.1.4 74037 2g0qA 173 6.35e+01 1fp1D 372 6.51e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1yarA 233 6.51e+01 1lxnA 99 6.62e+01 d.58.48.1 84737 2ah5A 210 6.71e+01 1jy5A 212 6.84e+01 d.124.1.1 71940 2fbqA 235 6.86e+01 1kbjA 412 6.91e+01 c.1.4.1 72280 1elvA 333 6.91e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1x0vA 354 6.98e+01 1b43A 340 7.01e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1cxqA 162 7.09e+01 1cxqA c.55.3.2 33621 1xiuA 230 7.13e+01 1sgwA 214 7.17e+01 c.37.1.12 105541 1pyoB 105 7.17e+01 1f20A 435 7.23e+01 b.43.4.1,c.25.1.4 64932,64933 1mtyB 384 7.29e+01 1mtyB a.25.1.2 16740 1cpcA 162 7.29e+01 1cpcA a.1.1.3 15643 1paqA 189 7.36e+01 a.118.1.14 94413 2prd 174 7.37e+01 2prd b.40.5.1 25435 1t3wA 148 7.45e+01 2a9uA 144 7.48e+01 2b61A 377 7.52e+01 1pjr 724 7.57e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1fs7A 485 7.59e+01 1qdbA a.138.1.3 19691 1zthA 258 7.61e+01 2cb2A 318 7.64e+01 1pt7A 437 7.67e+01 c.123.1.1 95093 1izcA 339 7.75e+01 c.1.12.5 83838 1it2A 146 7.94e+01 a.1.1.2 66365 1wdcC 156 8.10e+01 1wdcC a.39.1.5 17317 1ng6A 148 8.24e+01 a.182.1.1 85670 1g2cB 43 8.30e+01 1g2cB 1hr6A 475 8.33e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1tvlA 454 8.35e+01 c.1.16.4 107366 9gafA 295 8.36e+01 1apyA d.153.1.5 42008 2f4qA 346 8.41e+01 1j6rA 214 8.43e+01 d.173.1.2 71598 1xl7A 612 8.48e+01 1vzqH 250 8.50e+01 1fnnA 389 8.52e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1nf3A 195 8.55e+01 c.37.1.8 85594 1x31D 99 8.67e+01 1b4pA 217 8.71e+01 a.45.1.1,c.47.1.5 83158,83159 1r1dA 247 8.78e+01 c.69.1.29 96813 1z98A 281 8.81e+01 1ciy 590 8.83e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1o1zA 234 8.87e+01 c.1.18.3 86555 1jcfA 344 8.94e+01 c.55.1.1,c.55.1.1 62878,62879