InFilePrefix /projects/compbio/lib/alphabet/ ReadAlphabet anglevector.alphabet InFilePrefix // bystroff alphabet CreateCombinedNNet bys_t2k single T0294.t2k.bys.rdb CreateCombinedNNet bys_t04 single T0294.t04.bys.rdb CreateCombinedNNet bys_t06 single T0294.t06.bys.rdb CreateCombinedNNet bys_mean mean T0294.t2k.bys.rdb 1 T0294.t04.bys.rdb 1 T0294.t06.bys.rdb 1 CreatePredAngleVectorCost pred_bys_t2k BystroffAV bys_t2k CreatePredAngleVectorCost pred_bys_t04 BystroffAV bys_t04 CreatePredAngleVectorCost pred_bys_t06 BystroffAV bys_t06 CreatePredAngleVectorCost pred_bys_mean BystroffAV bys_mean // deBrevern's protein blocks CreateCombinedNNet pb_t2k single T0294.t2k.pb.rdb CreateCombinedNNet pb_t04 single T0294.t04.pb.rdb CreateCombinedNNet pb_t06 single T0294.t06.pb.rdb CreateCombinedNNet pb_mean mean T0294.t2k.pb.rdb 1 T0294.t04.pb.rdb 1 T0294.t06.pb.rdb 1 CreatePredAngleVectorCost pred_pb_t2k deBrevernAV pb_t2k CreatePredAngleVectorCost pred_pb_t04 deBrevernAV pb_t04 CreatePredAngleVectorCost pred_pb_t06 deBrevernAV pb_t06 CreatePredAngleVectorCost pred_pb_mean deBrevernAV pb_mean SetCost bystroff 5 \ pred_bys_t2k 5 \ pred_bys_t04 5 \ pred_bys_t06 5 \ pred_bys_mean 5 \ pred_pb_t2k 5 \ pred_pb_t04 5 \ pred_pb_t06 5 \ pred_pb_mean 5