PFRMAT RR TARGET T0294 AUTHOR 5370-1100-4902 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: logseploglen.5xt04_ent.3xnearNS_str2.miRvp_pplR.n28.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 SRPVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVA GAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRV GYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYG LTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVN QDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHR TRNTMSLLAANNLLAGLRGEPMPSELKL 9 54 0 8 0.604829968892 9 55 0 8 0.653344781618 9 56 0 8 0.646465449804 9 77 0 8 0.612471855302 9 78 0 8 0.632614190259 9 156 0 8 0.603250391516 9 158 0 8 0.631731805656 9 212 0 8 0.63052261194 9 240 0 8 0.619051612097 10 31 0 8 0.664739526002 10 54 0 8 0.65061592553 10 55 0 8 0.698689545954 10 56 0 8 0.697033713119 10 57 0 8 0.638001093794 10 77 0 8 0.6514002674 10 78 0 8 0.670948899136 10 156 0 8 0.63745641194 10 158 0 8 0.671613410998 10 180 0 8 0.62362693967 10 212 0 8 0.676341249489 10 240 0 8 0.646754131186 10 241 0 8 0.613043771249 10 289 0 8 0.614171262687 10 290 0 8 0.608174315475 11 31 0 8 0.690584679969 11 54 0 8 0.674881502121 11 55 0 8 0.709904545326 11 56 0 8 0.704430492694 11 57 0 8 0.629612993244 11 77 0 8 0.668732043991 11 78 0 8 0.685628075098 11 156 0 8 0.658666323331 11 158 0 8 0.677806443676 11 180 0 8 0.642402123174 11 212 0 8 0.679211722859 11 240 0 8 0.670976133229 11 241 0 8 0.613795432207 11 288 0 8 0.603697030636 11 289 0 8 0.616758501493 11 290 0 8 0.613397814454 33 55 0 8 0.613871687667 54 78 0 8 0.653393802985 54 158 0 8 0.616894671956 54 212 0 8 0.603185029694 54 240 0 8 0.604917117989 55 67 0 8 0.650528776434 55 68 0 8 0.606197120346 55 75 0 8 0.668072978947 55 77 0 8 0.729191729772 55 78 0 8 0.7436257989 55 79 0 8 0.685410202357 55 100 0 8 0.654739167164 55 156 0 8 0.688139058445 55 158 0 8 0.700013122859 55 180 0 8 0.677675720031 55 181 0 8 0.6247816652 55 212 0 8 0.704904365907 55 214 0 8 0.621213999057 55 239 0 8 0.611872705263 55 240 0 8 0.697011925844 55 241 0 8 0.649521115004 55 288 0 8 0.627456053103 55 289 0 8 0.638257094266 55 290 0 8 0.633540149411 56 67 0 8 0.65647125546 56 68 0 8 0.619743358052 56 71 0 8 0.609557807384 56 75 0 8 0.701293125216 56 77 0 8 0.758822422624 56 78 0 8 0.755113139199 56 79 0 8 0.726119724116 56 80 0 8 0.62385025923 56 93 0 8 0.617771609741 56 100 0 8 0.708428457502 56 156 0 8 0.702366148468 56 158 0 8 0.705966495522 56 159 0 8 0.612259429379 56 180 0 8 0.694539070228 56 181 0 8 0.634253682639 56 206 0 8 0.631639209741 56 211 0 8 0.606730908562 56 212 0 8 0.707812967007 56 213 0 8 0.672817157895 56 214 0 8 0.626263199843 56 239 0 8 0.627935373134 56 240 0 8 0.704267088138 56 241 0 8 0.671907539199 56 288 0 8 0.658840621524 56 289 0 8 0.667419360723 56 290 0 8 0.66459790872 57 75 0 8 0.66288216088 57 77 0 8 0.728913942027 57 78 0 8 0.742923159309 57 79 0 8 0.67175502828 57 100 0 8 0.652353460644 57 156 0 8 0.665627357423 57 158 0 8 0.68841684619 57 180 0 8 0.655223934014 57 212 0 8 0.688084590259 57 213 0 8 0.637783221053 57 214 0 8 0.601578218225 57 240 0 8 0.676368483582 57 241 0 8 0.622951534171 57 288 0 8 0.602395241005 57 289 0 8 0.619220463472 57 290 0 8 0.616518841477 58 77 0 8 0.631971465672 77 156 0 8 0.628273075884 77 158 0 8 0.645332511548 77 180 0 8 0.60718844132 77 212 0 8 0.64535974564 77 240 0 8 0.641269184918 78 93 0 8 0.635871387745 78 100 0 8 0.706276964179 78 156 0 8 0.70157635978 78 157 0 8 0.627140137628 78 158 0 8 0.707998158837 78 159 0 8 0.622902512804 78 180 0 8 0.692311321445 78 181 0 8 0.626034433464 78 206 0 8 0.610843256559 78 211 0 8 0.604862649804 78 212 0 8 0.708412117046 78 214 0 8 0.623147619639 78 239 0 8 0.612253982561 78 240 0 8 0.70414725813 78 241 0 8 0.675012225766 78 288 0 8 0.651460182404 78 289 0 8 0.649847924116 78 290 0 8 0.652348013826 79 93 0 8 0.601191494108 79 100 0 8 0.64610595978 79 156 0 8 0.685971224666 79 159 0 8 0.621448212255 79 240 0 8 0.6880083348 79 289 0 8 0.614955604556 79 290 0 8 0.610903171563 80 158 0 8 0.632162104321 100 158 0 8 0.611262661587 156 180 0 8 0.670344302278 156 181 0 8 0.641922803142 156 182 0 8 0.615189817753 156 212 0 8 0.672664646976 156 214 0 8 0.618136546583 156 240 0 8 0.658960451532 156 241 0 8 0.616317309191 156 289 0 8 0.607983676826 156 290 0 8 0.601256855931 157 180 0 8 0.704986068185 157 181 0 8 0.660550922545 157 182 0 8 0.619323953024 157 212 0 8 0.705127685467 157 213 0 8 0.636764665986 157 240 0 8 0.67507214077 157 241 0 8 0.627526861744 158 168 0 8 0.653677037549 158 172 0 8 0.658328620581 158 180 0 8 0.762629748782 158 181 0 8 0.702121041634 158 182 0 8 0.659494239749 158 205 0 8 0.606349631265 158 206 0 8 0.660801476198 158 211 0 8 0.634547810841 158 212 0 8 0.728445515632 158 213 0 8 0.692681705106 158 214 0 8 0.650997202828 158 239 0 8 0.655469040848 158 240 0 8 0.721293842891 158 241 0 8 0.693417025609 158 288 0 8 0.667642680283 158 289 0 8 0.676243206756 158 290 0 8 0.675905504006 159 168 0 8 0.65520214674 159 172 0 8 0.662326585389 159 175 0 8 0.608746231422 159 180 0 8 0.764410858445 159 181 0 8 0.708929564808 159 182 0 8 0.688291569364 159 205 0 8 0.60569601304 159 206 0 8 0.650087584132 159 211 0 8 0.635849600471 159 212 0 8 0.743086563865 159 213 0 8 0.710688887196 159 214 0 8 0.662408287667 159 239 0 8 0.644493701493 159 240 0 8 0.72852721791 159 241 0 8 0.69225685326 159 254 0 8 0.624286004713 159 288 0 8 0.669064299921 159 289 0 8 0.674859714847 159 290 0 8 0.67294788154 160 180 0 8 0.660480113904 160 212 0 8 0.652053885625 161 180 0 8 0.61292938806 161 212 0 8 0.601954048704 180 211 0 8 0.626824222152 180 212 0 8 0.725700319089 180 214 0 8 0.642701698193 180 239 0 8 0.63130695381 180 240 0 8 0.710607184918 180 241 0 8 0.678416487353 180 288 0 8 0.633698107148 180 289 0 8 0.63801743425 180 290 0 8 0.635991217753 181 206 0 8 0.615897904163 181 211 0 8 0.627123797172 181 212 0 8 0.738620172663 181 213 0 8 0.683177006756 181 214 0 8 0.669565407227 181 239 0 8 0.626731626237 181 240 0 8 0.695497710291 181 241 0 8 0.643044847761 181 288 0 8 0.606398652632 181 289 0 8 0.625484304792 181 290 0 8 0.621208552239 182 211 0 8 0.617531949725 182 212 0 8 0.722906101178 182 213 0 8 0.677223634093 182 214 0 8 0.609307253731 182 240 0 8 0.698662311862 182 241 0 8 0.638507647918 182 289 0 8 0.611807343441 182 290 0 8 0.613283431265 183 212 0 8 0.684380753653 210 240 0 8 0.608512018225 211 240 0 8 0.672577497879 211 241 0 8 0.642325867714 211 289 0 8 0.605712353496 212 225 0 8 0.610156957423 212 231 0 8 0.656950575491 212 238 0 8 0.694114218382 212 239 0 8 0.711255356324 212 240 0 8 0.766965416339 212 241 0 8 0.73188245813 212 242 0 8 0.610309468342 212 254 0 8 0.677583124116 212 258 0 8 0.609094827808 212 266 0 8 0.644057956009 212 268 0 8 0.660785135742 212 270 0 8 0.614705050903 212 282 0 8 0.601937708248 212 288 0 8 0.700138399686 212 289 0 8 0.703493639906 212 290 0 8 0.699648186017 213 238 0 8 0.734589526944 213 239 0 8 0.736632083896 213 241 0 8 0.746218484525 213 242 0 8 0.602956263315 213 254 0 8 0.66455978099 213 267 0 8 0.65568691359 213 290 0 8 0.693471493794 214 231 0 8 0.658916876984 214 238 0 8 0.729322453417 214 239 0 8 0.725476999529 214 240 0 8 0.754470414611 214 241 0 8 0.743614905263 214 254 0 8 0.663982418225 214 266 0 8 0.626530093951 214 268 0 8 0.655218487196 214 288 0 8 0.700230995601 214 289 0 8 0.710067949882 214 290 0 8 0.696717797643 215 238 0 8 0.611916279811 215 239 0 8 0.660066155695 215 240 0 8 0.736490466614 215 241 0 8 0.695121879811 215 254 0 8 0.614149475412 215 289 0 8 0.623163960094 215 290 0 8 0.618283610683 216 239 0 8 0.62053314674 216 240 0 8 0.704533982247 216 241 0 8 0.641525185389 226 240 0 8 0.609530573291 226 241 0 8 0.612428280754 239 254 0 8 0.658143428751 239 268 0 8 0.631611975648 239 288 0 8 0.641726717675 239 289 0 8 0.65777304509 239 290 0 8 0.650310903692 240 253 0 8 0.639575224352 240 254 0 8 0.724491125373 240 257 0 8 0.643142890495 240 258 0 8 0.635255897251 240 266 0 8 0.719823201885 240 268 0 8 0.733342205499 240 270 0 8 0.659766580676 240 282 0 8 0.62265740597 240 288 0 8 0.720019287353 240 289 0 8 0.716849238963 240 290 0 8 0.712949316889 240 291 0 8 0.613986070856 240 313 0 8 0.602144687353 241 253 0 8 0.634918194501 241 254 0 8 0.710274928987 241 257 0 8 0.640490289866 241 258 0 8 0.645016596072 241 266 0 8 0.729997858916 241 268 0 8 0.744017969835 241 270 0 8 0.664652376905 241 282 0 8 0.611279002042 241 288 0 8 0.727797344226 241 289 0 8 0.72304771846 241 290 0 8 0.724594614925 241 291 0 8 0.60908938099 241 313 0 8 0.602956263315 242 254 0 8 0.662037904006 242 257 0 8 0.612199514375 242 258 0 8 0.611600364336 242 288 0 8 0.642679910919 242 289 0 8 0.66455978099 242 290 0 8 0.653905803928 243 254 0 8 0.651580012412 243 288 0 8 0.628463714533 243 289 0 8 0.656503936371 243 290 0 8 0.648273793559 268 288 0 8 0.67003928044 268 289 0 8 0.73986204729 268 290 0 8 0.719823201885 270 289 0 8 0.654477719874 270 290 0 8 0.622722767793 289 305 0 8 0.628790523645 289 309 0 8 0.634907300864 289 313 0 8 0.632641424352 289 317 0 8 0.601305877298 290 305 0 8 0.61904071846 290 309 0 8 0.637734199686 290 313 0 8 0.639629692537 290 317 0 8 0.614165815868 END