# TARGET T0293 # Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0293.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 17 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 V 0.422 0.015 0.003 0.005 0.017 0.005 0.533 2 S 0.664 0.011 0.002 0.008 0.017 0.004 0.294 3 L 0.633 0.027 0.004 0.015 0.047 0.011 0.263 4 N 0.469 0.017 0.009 0.027 0.064 0.040 0.375 5 F 0.140 0.021 0.027 0.040 0.105 0.193 0.473 6 K 0.031 0.025 0.010 0.025 0.463 0.104 0.343 7 D 0.004 0.002 0.002 0.023 0.465 0.016 0.489 8 P 0.001 0.001 0.022 0.886 0.037 0.041 0.014 9 E 0.001 0.001 0.014 0.946 0.008 0.029 0.003 10 A 0.001 0.001 0.008 0.977 0.002 0.010 0.002 11 V 0.001 0.001 0.002 0.990 0.001 0.005 0.002 12 R 0.001 0.001 0.001 0.993 0.002 0.004 0.001 13 A 0.001 0.001 0.001 0.991 0.001 0.006 0.002 14 L 0.001 0.001 0.001 0.994 0.001 0.003 0.002 15 T 0.001 0.001 0.001 0.994 0.001 0.003 0.001 16 C 0.001 0.001 0.001 0.994 0.001 0.004 0.001 17 T 0.001 0.001 0.001 0.988 0.001 0.010 0.001 18 L 0.001 0.001 0.001 0.960 0.002 0.035 0.002 19 L 0.001 0.001 0.004 0.908 0.008 0.055 0.023 20 R 0.002 0.001 0.049 0.830 0.018 0.077 0.023 21 E 0.002 0.001 0.054 0.697 0.025 0.208 0.013 22 D 0.003 0.006 0.085 0.480 0.094 0.223 0.110 23 F 0.008 0.013 0.046 0.196 0.170 0.469 0.098 24 G 0.011 0.005 0.017 0.017 0.130 0.642 0.178 25 L 0.042 0.013 0.005 0.014 0.244 0.038 0.644 26 S 0.265 0.023 0.003 0.005 0.055 0.017 0.633 27 I 0.289 0.011 0.003 0.004 0.023 0.006 0.664 28 D 0.583 0.029 0.005 0.005 0.023 0.010 0.344 29 I 0.302 0.065 0.006 0.008 0.073 0.007 0.539 30 P 0.052 0.007 0.012 0.003 0.042 0.013 0.871 31 L 0.001 0.001 0.059 0.005 0.044 0.876 0.013 32 E 0.001 0.001 0.073 0.003 0.039 0.874 0.010 33 R 0.044 0.032 0.124 0.013 0.191 0.114 0.482 34 L 0.160 0.143 0.022 0.011 0.092 0.058 0.513 35 I 0.145 0.059 0.014 0.005 0.152 0.034 0.592 36 P 0.146 0.039 0.025 0.004 0.149 0.100 0.536 37 T 0.062 0.012 0.022 0.004 0.243 0.187 0.469 38 V 0.052 0.022 0.038 0.003 0.190 0.051 0.643 39 P 0.025 0.005 0.200 0.013 0.210 0.322 0.224 40 L 0.067 0.011 0.166 0.011 0.318 0.299 0.129 41 R 0.352 0.058 0.077 0.019 0.052 0.026 0.416 42 L 0.696 0.021 0.013 0.014 0.020 0.038 0.198 43 N 0.729 0.003 0.015 0.016 0.061 0.057 0.120 44 Y 0.886 0.011 0.009 0.011 0.021 0.014 0.048 45 I 0.940 0.005 0.002 0.005 0.007 0.004 0.036 46 H 0.946 0.002 0.002 0.003 0.008 0.004 0.034 47 W 0.885 0.004 0.003 0.005 0.018 0.010 0.074 48 V 0.710 0.015 0.004 0.005 0.003 0.017 0.246 49 E 0.001 0.001 0.001 0.001 0.001 0.001 0.999