# TARGET T0293 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0293.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 4.73833 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 V 0.010 0.739 0.144 0.010 0.059 0.015 0.001 0.001 0.021 0.001 0.001 2 S 0.011 0.609 0.291 0.004 0.019 0.040 0.001 0.001 0.024 0.001 0.001 3 L 0.033 0.686 0.141 0.012 0.037 0.042 0.002 0.001 0.045 0.001 0.001 4 N 0.033 0.258 0.157 0.047 0.025 0.278 0.059 0.002 0.139 0.001 0.001 5 F 0.164 0.217 0.191 0.135 0.165 0.045 0.037 0.014 0.019 0.010 0.003 6 K 0.203 0.213 0.237 0.246 0.048 0.035 0.005 0.002 0.009 0.002 0.001 7 D 0.005 0.116 0.554 0.003 0.058 0.090 0.002 0.001 0.167 0.004 0.001 8 P 0.990 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 E 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 A 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 V 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 A 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 T 0.992 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 C 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 T 0.987 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 L 0.979 0.001 0.003 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 L 0.870 0.010 0.019 0.090 0.002 0.004 0.002 0.001 0.002 0.001 0.001 20 R 0.896 0.012 0.032 0.037 0.003 0.006 0.008 0.002 0.002 0.002 0.001 21 E 0.865 0.030 0.026 0.054 0.011 0.006 0.005 0.001 0.002 0.002 0.001 22 D 0.512 0.068 0.058 0.265 0.014 0.033 0.023 0.002 0.025 0.001 0.001 23 F 0.103 0.058 0.087 0.641 0.033 0.008 0.046 0.011 0.009 0.003 0.001 24 G 0.014 0.006 0.015 0.031 0.029 0.009 0.613 0.242 0.006 0.036 0.001 25 L 0.012 0.539 0.349 0.018 0.050 0.019 0.001 0.001 0.011 0.001 0.001 26 S 0.031 0.399 0.349 0.035 0.033 0.101 0.013 0.001 0.035 0.001 0.001 27 I 0.018 0.785 0.089 0.010 0.069 0.012 0.001 0.001 0.014 0.001 0.001 28 D 0.026 0.232 0.371 0.022 0.008 0.232 0.016 0.001 0.090 0.001 0.002 29 I 0.009 0.491 0.324 0.002 0.021 0.025 0.004 0.001 0.124 0.001 0.001 30 P 0.010 0.006 0.914 0.001 0.001 0.051 0.001 0.001 0.006 0.001 0.012 31 L 0.652 0.009 0.213 0.066 0.004 0.015 0.017 0.011 0.002 0.006 0.004 32 E 0.500 0.021 0.037 0.185 0.019 0.009 0.142 0.079 0.003 0.005 0.001 33 R 0.294 0.123 0.116 0.391 0.019 0.022 0.013 0.002 0.020 0.001 0.001 34 L 0.119 0.211 0.484 0.072 0.024 0.053 0.016 0.003 0.013 0.003 0.001 35 I 0.037 0.404 0.210 0.005 0.019 0.027 0.013 0.001 0.285 0.001 0.001 36 P 0.114 0.006 0.834 0.003 0.001 0.013 0.001 0.001 0.001 0.002 0.026 37 T 0.342 0.100 0.376 0.082 0.015 0.053 0.007 0.006 0.012 0.003 0.004 38 V 0.099 0.441 0.217 0.007 0.021 0.029 0.007 0.001 0.176 0.001 0.001 39 P 0.217 0.009 0.682 0.006 0.001 0.065 0.002 0.001 0.003 0.001 0.016 40 L 0.591 0.055 0.127 0.098 0.026 0.039 0.031 0.015 0.012 0.003 0.002 41 R 0.424 0.274 0.095 0.069 0.058 0.033 0.021 0.006 0.017 0.002 0.001 42 L 0.305 0.240 0.293 0.042 0.015 0.077 0.006 0.001 0.019 0.001 0.001 43 N 0.496 0.093 0.050 0.294 0.018 0.020 0.015 0.002 0.012 0.001 0.001 44 Y 0.144 0.481 0.091 0.050 0.157 0.024 0.029 0.003 0.017 0.001 0.001 45 I 0.172 0.586 0.161 0.018 0.013 0.028 0.001 0.001 0.020 0.001 0.001 46 H 0.217 0.482 0.090 0.064 0.048 0.033 0.008 0.001 0.058 0.001 0.001 47 W 0.196 0.263 0.305 0.048 0.053 0.076 0.024 0.004 0.028 0.002 0.001 48 V 0.250 0.351 0.202 0.105 0.026 0.037 0.004 0.001 0.021 0.001 0.001 49 E 0.313 0.196 0.258 0.065 0.071 0.031 0.027 0.006 0.016 0.017 0.001