# List of top-scoring protein chains for t06-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1n9eA 787 8.11e-01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1o26A 232 8.11e-01 d.207.1.1 86566 1bsg 266 1.06e+00 1btl e.3.1.1 42729 2gdzA 267 1.45e+00 2airB 153 1.86e+00 1jsf 130 2.07e+00 3lzt d.2.1.2 36410 1mtzA 293 2.49e+00 c.69.1.7 79467 1vns 609 2.49e+00 1vns a.111.1.3 19061 2c0rA 362 2.55e+00 1xkyA 301 2.61e+00 2f57A 317 2.70e+00 1xwwA 157 3.01e+00 1yfsA 465 3.34e+00 1epwA 1290 3.37e+00 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1yhtA 367 3.46e+00 1t0bA 252 3.60e+00 c.23.16.6 106199 1jae 471 3.72e+00 1smd b.71.1.1,c.1.8.1 27773,28760 2an3A 289 4.10e+00 1qv9A 283 4.63e+00 c.127.1.1 96356 1xqwA 293 5.01e+00 1wmaA 276 5.24e+00 1zkcA 197 6.07e+00 1m3yA 413 6.25e+00 b.121.2.3,b.121.2.3 78579,78580 1v4pA 157 6.53e+00 1y08A 323 6.89e+00 1xmbA 418 7.06e+00 1iugA 352 7.06e+00 c.67.1.3 90699 1cnv 299 7.19e+00 1cnv c.1.8.5 28989 1kq6A 141 9.11e+00 d.189.1.1 91020 1p2fA 220 1.06e+01 a.4.6.1,c.23.1.1 87720,87721 2d1eA 248 1.07e+01 1yj7A 171 1.08e+01 1enfA 212 1.11e+01 3seb b.40.2.2,d.15.6.1 25198,37787 1lqaA 346 1.12e+01 c.1.7.1 84674 1q35A 320 1.14e+01 c.94.1.1 95661 1t3gA 159 1.16e+01 2b9dA 52 1.20e+01 1heiA 451 1.22e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1ll2A 333 1.22e+01 c.68.1.14 74005 1sz7A 200 1.26e+01 2c07A 285 1.27e+01 2ffeA 311 1.29e+01 1vyiA 112 1.31e+01 1zosA 230 1.35e+01 1lniA 96 1.39e+01 d.1.1.2 74046 1h1yA 228 1.40e+01 c.1.2.2 76506 1uylA 236 1.41e+01 d.122.1.1 108147 1a8rA 221 1.45e+01 1a8rA d.96.1.1 40587 1o59A 355 1.45e+01 b.18.1.22,b.18.1.22 92495,92496 2fp4B 395 1.46e+01 1e4yA 214 1.48e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1rypB 250 1.50e+01 1rypB d.153.1.4 41933 4ubpC 570 1.57e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 2fnaA 357 1.62e+01 1d2zB 153 1.64e+01 1d2zB a.77.1.2 18439 1cr5A 189 1.66e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1ua7A 422 1.66e+01 b.71.1.1,c.1.8.1 107759,107760 1wkyA 464 1.70e+01 1x88A 359 1.71e+01 1ohvA 472 1.71e+01 c.67.1.4 93031 1y0yA 353 1.72e+01 1iro 54 1.72e+01 1rb9 g.41.5.1 45223 1wdtA 665 1.74e+01 1b7yB 785 1.76e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1hy7A 173 1.77e+01 d.92.1.11 65957 1k7kA 221 1.85e+01 c.51.4.1 72104 1jfrA 262 1.87e+01 1jfrA c.69.1.16 34724 2bd0A 244 1.87e+01 1xo7A 166 1.89e+01 1vquA 374 1.93e+01 1uanA 227 1.94e+01 c.134.1.1 99135 1vb5A 276 1.96e+01 1nbaA 264 1.99e+01 1nbaA c.33.1.3 31753 1edqA 540 2.01e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1fecA 490 2.05e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1pgvA 197 2.08e+01 c.10.1.1 88073 2cwcA 303 2.13e+01 1czfA 362 2.14e+01 1czfA b.80.1.3 28031 1t5oA 351 2.21e+01 c.124.1.5 106459 2g30A 258 2.22e+01 1ockA 412 2.25e+01 c.117.1.1 86802 1in4A 334 2.33e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1h0hA 977 2.34e+01 b.52.2.2,c.81.1.1 76435,76436 1sflA 238 2.35e+01 1xx6A 191 2.37e+01 1u5hA 273 2.45e+01 1zd0A 150 2.46e+01 1mrzA 293 2.46e+01 b.43.5.1,c.26.1.3 91452,91453 1suwA 249 2.61e+01 e.52.1.1 106027 1nxcA 478 2.67e+01 a.102.2.1 92293 1mucA 373 2.70e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1s7zA 117 2.76e+01 a.159.3.1 98715 1kjqA 391 2.78e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1dg9A 157 2.90e+01 1dg9A c.44.1.1 32637 1gadO 330 2.92e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1a3c 181 2.93e+01 1a3c c.61.1.1 34095 1m1nA 491 2.95e+01 c.92.2.3 78417 1m3sA 186 2.96e+01 c.80.1.3 78573 1vj0A 380 2.97e+01 b.35.1.2,c.2.1.1 100786,100787 1f46A 140 2.98e+01 1f46A d.129.4.1 59643 1eejA 216 3.05e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1ysjA 404 3.07e+01 1muwA 386 3.11e+01 c.1.15.3 79495 1olmA 403 3.12e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2bw0A 329 3.16e+01 1uf3A 228 3.18e+01 d.159.1.6 99317 1mtyD 512 3.21e+01 1mhyD a.25.1.2 16742 1ppjB 439 3.29e+01 d.185.1.1,d.185.1.1 104254,104255 2b7kA 200 3.39e+01 1sg6A 393 3.43e+01 e.22.1.1 105522 1lmq 129 3.44e+01 3lzt d.2.1.2 36588 1sffA 426 3.49e+01 c.67.1.4 105482 2b67A 204 3.54e+01 1jmxA 494 3.59e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1poiA 317 3.60e+01 1poiA c.124.1.2 34153 1wdyA 285 3.61e+01 1ezfA 340 3.63e+01 1ezfA a.128.1.2 19440 1r9dA 787 3.67e+01 c.7.1.1 104865 1qopB 396 3.67e+01 2tysB c.79.1.1 35270 1a8l 226 3.77e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 2c6qA 351 3.79e+01 2chnA 716 3.86e+01 2ez3A 302 3.86e+01 1f2tA 149 3.86e+01 1f2tA c.37.1.12 32373 1yk4A 52 3.89e+01 1zl0A 311 3.90e+01 1rb9 53 3.95e+01 1rb9 g.41.5.1 45214 1vprA 374 4.09e+01 2gdnA 267 4.20e+01 1uyjA 296 4.26e+01 f.8.1.2 108143 1bd8 156 4.29e+01 1bd8 d.211.1.1 19157 1odkA 235 4.33e+01 c.56.2.1 86863 1pk6C 129 4.41e+01 b.22.1.1 94803 1xaoA 121 4.48e+01 1rm6A 769 4.67e+01 1stzA 338 4.78e+01 a.4.5.51,d.110.2.3 106009,106010 1wlzA 105 4.86e+01 1q9uA 130 4.96e+01 d.129.7.1 96314 1m93B 245 5.12e+01 1e58A 249 5.17e+01 1qhfA c.60.1.1 59262 1k07A 263 5.22e+01 d.157.1.1 77218 1yspA 181 5.23e+01 1v5eA 590 5.25e+01 1s9uA 207 5.27e+01 a.184.1.1 105390 1p1xA 260 5.29e+01 c.1.10.1 104060 1ht6A 405 5.31e+01 b.71.1.1,c.1.8.1 83629,83630 1dszA 86 5.32e+01 2nllB g.39.1.2 45129 1xknA 355 5.33e+01 1yxmA 303 5.39e+01 1amuA 563 5.41e+01 1amuA e.23.1.1 43351 1ctt 294 5.45e+01 1ctt c.97.1.1,c.97.1.1 36022,36023 2gtrA 261 5.46e+01 1h0pA 182 5.53e+01 b.62.1.1 76450 1gk9B 557 5.54e+01 1ia6A 441 5.58e+01 a.102.1.2 76738 2ffyA 358 5.64e+01 1rdg 53 5.65e+01 1rb9 g.41.5.1 45221 1itxA 419 5.66e+01 c.1.8.5,d.26.3.1 71425,71426 1f1xA 322 5.68e+01 d.32.1.3,d.32.1.3 83208,83209 1l9kA 305 5.72e+01 c.66.1.25 84569 1goiA 499 5.75e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1oi0A 124 5.89e+01 c.97.3.1 93045 1vhwA 253 5.90e+01 c.56.2.1 100706 1zkdA 387 5.95e+01 1n7kA 234 5.95e+01 c.1.10.1 85374 2b4vA 468 5.99e+01 1b9oA 123 6.01e+01 3lzt d.2.1.2 36597 7taa 478 6.04e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1b63A 333 6.05e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1e9rA 437 6.12e+01 c.37.1.11 64827 1w8kA 447 6.18e+01 2apxA 112 6.19e+01 1n2sA 299 6.25e+01 c.2.1.2 79857 1gvnB 287 6.26e+01 c.37.1.21 76354 2aaoA 166 6.29e+01 1x7oA 287 6.33e+01 1yloA 348 6.66e+01 2d83A 363 6.75e+01 1pufB 73 6.76e+01 a.4.1.1 95132 1kmoA 774 6.78e+01 f.4.3.3 72753 1yndA 165 6.89e+01 2gfhA 260 7.04e+01 1xc3A 302 7.12e+01 1brfA 53 7.17e+01 1rb9 g.41.5.1 45236 1sv0C 82 7.36e+01 a.60.1.1 106037 1vf8A 377 7.40e+01 1unlD 208 7.53e+01 1nuyA 337 7.60e+01 e.7.1.1 86213 1r85A 379 7.65e+01 c.1.8.3 104839 1msk 331 7.66e+01 1msk d.173.1.1 42495 1g26A 31 7.72e+01 1g26A g.3.16.1 44381 1j4aA 333 7.72e+01 c.2.1.4,c.23.12.1 71502,71503 1wosA 364 7.74e+01 b.44.2.1,d.250.1.1 109468,109469 1rgyA 360 7.75e+01 e.3.1.1 97456 1f1uA 323 7.78e+01 d.32.1.3,d.32.1.3 83200,83201 1reqB 637 7.80e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 2g8mA 264 7.82e+01 1w7lA 422 7.83e+01 c.67.1.1 109226 1t5iA 172 7.84e+01 c.37.1.19 106450 1rx0A 393 7.86e+01 a.29.3.1,e.6.1.1 98007,98008 1n67A 359 7.90e+01 b.2.3.4,b.2.3.4 85354,85355 1lj8A 493 7.98e+01 a.100.1.9,c.2.1.6 90392,90393 1n40A 396 8.10e+01 a.104.1.1 79977 1x1iA 752 8.17e+01 1xmxA 385 8.22e+01 1wf3A 301 8.22e+01 1q74A 303 8.27e+01 c.134.1.1 96019 2bo9A 308 8.28e+01 2al3A 90 8.28e+01 1tkiA 321 8.32e+01 1tkiA d.144.1.7 41638 1m98A 317 8.34e+01 a.175.1.1,d.17.4.6 78866,78867 1jflA 228 8.40e+01 c.78.2.1,c.78.2.1 71656,71657 1o7eA 276 8.42e+01 e.3.1.1 92622 2bitX 165 8.45e+01 1l0wA 580 8.54e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1tt0A 623 8.60e+01 1o6zA 303 8.62e+01 c.2.1.5,d.162.1.1 81107,81108 6rxn 46 8.68e+01 1rb9 g.41.5.1 45222 1ub0A 258 8.75e+01 c.72.1.2 88394 1gpuA 680 8.78e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1qwkA 317 8.90e+01 c.1.7.1 96482 1ub3A 220 8.97e+01 c.1.10.1 88395