# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1t3gA 159 1.26e-01 1iro 54 5.75e-01 1rb9 g.41.5.1 45223 1wdyA 285 8.92e-01 1y7bA 542 1.02e+00 1qoyA 318 1.40e+00 1qoyA h.4.4.1 45788 1x9iA 302 1.54e+00 1yk4A 52 2.21e+00 1rdg 53 2.45e+00 1rb9 g.41.5.1 45221 1vmaA 306 2.52e+00 a.24.13.1,c.37.1.10 108887,108888 1e4yA 214 2.75e+00 1zin c.37.1.1,g.41.2.1 31901,45181 1s9uA 207 2.79e+00 a.184.1.1 105390 1z8sA 146 3.22e+00 2cspA 130 3.79e+00 1vqoQ 96 3.85e+00 1brfA 53 3.88e+00 1rb9 g.41.5.1 45236 1m7vA 363 3.91e+00 d.174.1.1 78748 1ywzA 175 4.65e+00 2g03A 194 5.29e+00 1rb9 53 5.36e+00 1rb9 g.41.5.1 45214 2ci1A 275 6.55e+00 1uanA 227 6.92e+00 c.134.1.1 99135 1t77A 414 7.01e+00 3sil 379 8.31e+00 3sil b.68.1.1 27542 1regX 122 8.76e+00 1regX d.58.27.1 39406 1g26A 31 8.77e+00 1g26A g.3.16.1 44381 1z3eA 132 9.04e+00 2exnA 136 9.11e+00 1skz 119 9.22e+00 1skz g.3.15.1,g.3.15.1 44366,44367 1prxA 224 9.44e+00 1prxA c.47.1.10 33076 2csgA 424 1.04e+01 1xvqA 175 1.07e+01 1wiwA 290 1.14e+01 2d83A 363 1.14e+01 6rxn 46 1.24e+01 1rb9 g.41.5.1 45222 1u5mA 73 1.29e+01 2bc4A 211 1.30e+01 1fe0A 68 1.34e+01 1cc8A d.58.17.1 39345 1s12A 94 1.38e+01 1wyuA 438 1.53e+01 1v3wA 173 1.68e+01 b.81.1.5 100291 1sz7A 200 1.70e+01 1m93B 245 1.73e+01 1xi1A 575 1.76e+01 1kq6A 141 1.78e+01 d.189.1.1 91020 1iapA 211 1.86e+01 a.91.1.1 62119 2cw5A 255 1.88e+01 1t5bA 201 1.88e+01 c.23.5.3 106433 1a76 326 1.98e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1vqrA 297 2.06e+01 1fjnA 39 2.30e+01 1fjnA g.3.7.3 44171 1l1eA 287 2.34e+01 c.66.1.18 73454 2bycA 137 2.40e+01 2bepA 159 2.41e+01 1yzxA 226 2.46e+01 2fhqA 141 2.51e+01 1lm8C 96 2.55e+01 d.42.1.1 74034 1ofcX 304 2.56e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2cxkA 95 2.62e+01 2b68A 43 2.67e+01 1fgkA 310 2.69e+01 1fgkA d.144.1.7 41693 2aq5A 402 2.76e+01 1hfoA 113 2.78e+01 d.80.1.3 61006 1ik9A 213 2.96e+01 b.59.1.1,h.1.11.1 66176,66177 1bsg 266 3.11e+01 1btl e.3.1.1 42729 2c1xA 456 3.12e+01 1iseA 185 3.12e+01 d.67.3.1 90691 1sazA 381 3.17e+01 1zo0A 126 3.23e+01 1q60A 99 3.30e+01 2fnjC 96 3.47e+01 1mhnA 59 3.49e+01 b.34.9.1 84964 1ufyA 122 3.51e+01 d.79.1.2 88489 1z2uA 150 3.51e+01 2d4pA 141 3.55e+01 1r5rA 119 3.59e+01 a.39.2.1 97104 2eifA 136 3.69e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1irdB 146 3.71e+01 a.1.1.2 66287 1vecA 206 3.75e+01 c.37.1.19 100575 1zdrA 164 3.80e+01 1r1a1 287 3.85e+01 1aym1 1zpwX 90 4.08e+01 1vjyA 303 4.10e+01 d.144.1.7 108633 1n4qB 377 4.10e+01 a.102.4.3 91636 1sgmA 191 4.11e+01 a.4.1.9,a.121.1.1 105537,105538 2fswA 107 4.14e+01 1qz8A 113 4.16e+01 b.140.1.1 96619 1lmb3 92 4.26e+01 1lmb3 2aa1A 144 4.27e+01 1idpA 172 4.34e+01 d.17.4.1 83685 1twuA 139 4.37e+01 d.32.1.8 107413 1du3A 130 4.45e+01 1d4vA g.24.1.1,g.24.1.1,g.24.1.1 44927,44928,44929 1y4eA 27 4.49e+01 1jae 471 4.50e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1naqA 112 4.52e+01 d.58.5.2 91761 1v76A 96 4.61e+01 1rv9A 259 4.62e+01 d.194.1.2 105105 1v5mA 136 4.64e+01 b.55.1.1 108379 1u09A 476 4.76e+01 e.8.1.4 107545 1g63A 181 4.76e+01 1g5qA c.34.1.1 60299 1i8nA 126 4.82e+01 1i8nA g.10.1.2 61976 1cy5A 97 4.82e+01 1cy5A a.77.1.3 18430 1mwwA 128 4.85e+01 d.80.1.4 91483 1ruwA 69 4.94e+01 2erbA 125 5.09e+01 1yr1A 119 5.18e+01 1hc7A 477 5.23e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1t8kA 77 5.27e+01 a.28.1.1 106666 1k92A 455 5.29e+01 c.26.2.1,d.210.1.1 68325,68326 1y9qA 192 5.53e+01 1wwzA 159 5.84e+01 1oaoA 674 5.89e+01 e.26.1.2 86744 1s5aA 150 5.90e+01 d.17.4.10 98525 2d69A 430 5.92e+01 1n3yA 198 5.93e+01 c.62.1.1 79976 1w6kA 732 6.00e+01 2covD 104 6.03e+01 1gcvB 136 6.18e+01 1cg5B a.1.1.2 15589 1wi9A 72 6.20e+01 2cwxA 430 6.24e+01 1m4vA 204 6.33e+01 b.40.2.2,d.15.6.1 74459,74460 2cbzA 237 6.33e+01 1le6A 123 6.50e+01 a.133.1.2 73862 2d5xA 141 6.53e+01 1uc2A 481 6.61e+01 d.261.1.1 99161 1flcA 432 6.62e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1ywnA 316 6.87e+01 1l6pA 125 6.88e+01 b.1.17.1 73626 1ywqA 200 6.90e+01 1qxoA 388 7.03e+01 d.258.1.1 96539 1ayoA 130 7.04e+01 1ayoA b.2.4.1 22431 1c3mA 147 7.26e+01 1jotA b.77.3.1 27983 1xw3A 110 7.54e+01 2fqpA 97 7.59e+01 1x89A 178 7.63e+01 1unlD 208 7.80e+01 1tx4A 198 7.86e+01 1tx4A a.116.1.1 19098 1v5aA 28 7.92e+01 2g7gA 213 7.97e+01 1p3dA 475 7.98e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2cs3A 93 8.01e+01 2c30A 321 8.01e+01 1lfdA 87 8.20e+01 1lfdA d.15.1.5 37622 1vqoW 154 8.27e+01 1y80A 210 8.27e+01 2bl8A 103 8.27e+01 2napA 723 8.27e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1zanL 214 8.30e+01 2bi7A 384 8.37e+01 1js3A 486 8.54e+01 c.67.1.6 67215 1gz8A 299 8.60e+01 d.144.1.7 83405 1ejdA 419 8.63e+01 1uae d.68.2.2 39576 1upqA 123 8.78e+01 1v4xA 144 8.84e+01 a.1.1.2 108363 1wcwA 261 8.88e+01