# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wmaA 276 7.39e-02 1t3gA 159 1.35e-01 1hu4A 288 1.41e-01 1hu4A 1n5dA 288 1.41e-01 c.2.1.2 80030 1ey4A 149 4.14e-01 1snc b.40.1.1 24815 1regX 122 8.38e-01 1regX d.58.27.1 39406 1tqhA 247 2.56e+00 c.69.1.29 107225 1r1dA 247 2.70e+00 c.69.1.29 96813 1n40A 396 2.88e+00 a.104.1.1 79977 2bd0A 244 2.89e+00 1t71A 281 3.42e+00 2b9dA 52 3.56e+00 2aaa 484 3.86e+00 7taa b.71.1.1,c.1.8.1 27777,28764 1k7kA 221 3.96e+00 c.51.4.1 72104 1s2oA 244 4.03e+00 2ci1A 275 4.11e+00 1us8A 147 4.27e+00 c.37.1.12 99859 1t77A 414 4.45e+00 2a0fA 310 5.02e+00 2bwnA 401 5.31e+00 1f2tA 149 5.57e+00 1f2tA c.37.1.12 32373 1kq6A 141 6.05e+00 d.189.1.1 91020 1jixA 351 6.35e+00 1c3jA c.87.1.1 63081 3csuA 310 6.36e+00 3csuA c.78.1.1,c.78.1.1 35094,35095 3bamA 213 6.44e+00 1bam c.52.1.3 33288 1zo0A 126 6.47e+00 1qlpA 394 6.73e+00 1ovaA e.1.1.1 42628 2a1iA 146 6.79e+00 1ws6A 171 6.98e+00 1snyA 267 7.04e+00 c.2.1.2 105833 2d4pA 141 7.25e+00 2bgkA 278 7.44e+00 1xaoA 121 7.60e+00 1c3jA 351 8.18e+00 1c3jA c.87.1.1 35459 1wiwA 290 8.22e+00 1oz9A 150 8.73e+00 d.92.1.15 93808 1o7kA 131 8.95e+00 d.189.1.1 81144 7taa 478 9.10e+00 7taa b.71.1.1,c.1.8.1 27778,28765 1z2wA 192 1.02e+01 2ew8A 249 1.06e+01 2d83A 363 1.08e+01 1ypcI 64 1.13e+01 2sniI d.40.1.1 38570 1m4vA 204 1.14e+01 b.40.2.2,d.15.6.1 74459,74460 1f0cA 305 1.15e+01 1c8oA e.1.1.1 42676 1o26A 232 1.16e+01 d.207.1.1 86566 1i3zA 103 1.25e+01 d.93.1.1 83667 1g61A 228 1.34e+01 1g61A d.126.1.1 41126 1c3hA 137 1.34e+01 b.22.1.1 90405 1vig 71 1.37e+01 1vih d.51.1.1 38806 1yj7A 171 1.37e+01 1w24A 182 1.61e+01 1wdtA 665 1.65e+01 1m93B 245 1.71e+01 2f9dA 125 1.76e+01 1jae 471 1.79e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1vcvA 226 1.82e+01 1lw6I 64 1.89e+01 d.40.1.1 74294 1ash 150 2.06e+01 1ash a.1.1.2 15622 1rf6A 427 2.13e+01 d.68.2.2 97366 1ihoA 283 2.15e+01 1ihoA c.26.1.4 62390 1sc3A 178 2.15e+01 c.17.1.1 105416 1c28A 135 2.16e+01 1c28A b.22.1.1 23857 2sns 149 2.21e+01 1snc b.40.1.1 24860 1n7hA 381 2.22e+01 c.2.1.2 80250 1o57A 291 2.24e+01 a.4.5.40,c.61.1.1 92483,92484 1ek8A 185 2.27e+01 1ek8A d.67.3.1 59444 2fb0A 94 2.27e+01 1esgA 213 2.37e+01 1bam c.52.1.3 33286 1ob8A 135 2.38e+01 1rwxA 178 2.44e+01 1v76A 96 2.45e+01 1cjcA 460 2.51e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1g26A 31 2.52e+01 1g26A g.3.16.1 44381 1u5hA 273 2.57e+01 1z6kA 293 2.61e+01 1vid 221 2.67e+01 1vid c.66.1.1 34178 1utaA 81 2.70e+01 d.58.52.1 108029 1ht6A 405 2.77e+01 b.71.1.1,c.1.8.1 83629,83630 1vl8A 267 2.77e+01 c.2.1.2 108733 1u5mA 73 2.88e+01 2ca6A 386 2.93e+01 1ooeA 236 2.96e+01 c.2.1.2 87196 1wdyA 285 2.98e+01 1gypA 358 3.05e+01 1dssG c.2.1.3,d.81.1.1 30004,39919 1gz6A 319 3.07e+01 c.2.1.2 76410 1u5vA 273 3.15e+01 8tlnE 316 3.24e+01 1hyt d.92.1.2 59075 1yqeA 282 3.24e+01 1j77A 209 3.25e+01 1j77A a.132.1.2 62674 2tmnE 316 3.27e+01 1hyt d.92.1.2 59055 1s7zA 117 3.39e+01 a.159.3.1 98715 1bcpD 110 3.44e+01 1bcpD b.40.2.1 25132 1wimA 94 3.46e+01 1s5aA 150 3.47e+01 d.17.4.10 98525 1z57A 339 3.48e+01 1fe0A 68 3.60e+01 1cc8A d.58.17.1 39345 1ugpA 203 3.61e+01 d.149.1.1 107831 1ireA 204 3.63e+01 d.149.1.1 76769 1k3tA 359 3.70e+01 c.2.1.3,d.81.1.1 72022,72023 1iseA 185 3.70e+01 d.67.3.1 90691 3seb 238 3.88e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1ve3A 227 3.90e+01 1xtmA 175 3.91e+01 1v5aA 28 3.92e+01 1ctn 540 4.00e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21876,29005,38439 1wxaA 116 4.00e+01 1edqA 540 4.00e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1h1dA 221 4.05e+01 c.66.1.1 83452 1zip 217 4.08e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1hrhA 136 4.10e+01 1rthA c.55.3.1 33577 2c07A 285 4.10e+01 1fx2A 235 4.15e+01 1fx2A d.58.29.1 39430 1bmqA 167 4.22e+01 1pauA c.17.1.1 30998 1cbf 285 4.33e+01 1cbf c.90.1.1 35587 12asA 330 4.37e+01 12asA d.104.1.1 40783 1lgpA 116 4.42e+01 b.26.1.2 73890 1x1mA 107 4.43e+01 1e4yA 214 4.55e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1udxA 416 4.55e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1nzaA 103 4.62e+01 d.58.5.2 86444 1djtA 64 4.62e+01 1aho g.3.7.1 44132 1h1yA 228 4.66e+01 c.1.2.2 76506 1ocsA 162 4.67e+01 d.189.1.1 92776 1nykA 165 4.68e+01 b.33.1.1 86408 1jl5A 454 4.74e+01 c.10.2.6 66830 1yr1A 119 4.74e+01 1x9iA 302 4.78e+01 1tzbA 302 4.84e+01 c.80.1.1 107470 1oaa 259 4.92e+01 1oaa c.2.1.2 29829 1dun 134 4.93e+01 1dun b.85.4.1 28371 1uanA 227 4.94e+01 c.134.1.1 99135 1h5rA 293 4.94e+01 c.68.1.6 65623 1mrzA 293 4.97e+01 b.43.5.1,c.26.1.3 91452,91453 1ytlA 174 5.00e+01 1aie 31 5.02e+01 1aie a.53.1.1 17829 1ud9A 245 5.04e+01 d.131.1.2,d.131.1.2 107768,107769 1i5gA 144 5.08e+01 1ewxA c.47.1.10 61784 1z6oM 191 5.12e+01 1p5hA 428 5.14e+01 c.123.1.1 87802 1pieA 419 5.15e+01 d.14.1.5,d.58.26.7 94706,94707 2gzqA 200 5.18e+01 1d4tA 104 5.20e+01 1d4tA d.93.1.1 40537 2ez9A 603 5.24e+01 2erfA 209 5.30e+01 1bd8 156 5.33e+01 1bd8 d.211.1.1 19157 1zin 217 5.40e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1y7bA 542 5.41e+01 1xg8A 111 5.45e+01 1gu2A 124 5.45e+01 a.3.1.1 76348 1f8vA 355 5.45e+01 2bbvA b.121.4.4 23329 1vlmA 219 5.56e+01 c.66.1.41 108836 1w5fA 353 5.59e+01 3xis 387 5.69e+01 4xis c.1.15.3 29423 4xis 387 5.71e+01 4xis c.1.15.3 29421 1gmxA 108 5.71e+01 c.46.1.3 65355 1y60A 169 5.72e+01 1vkrA 125 5.83e+01 c.44.2.1 108689 1u3nA 162 5.88e+01 1ew4A 106 5.91e+01 1ew4A d.82.2.1 40023 1bm8 99 5.92e+01 1bm8 d.34.1.1 38528 1ruwA 69 5.99e+01 1s7kA 182 6.06e+01 1f2vA 219 6.08e+01 1f2vA c.23.17.1 59627 1fexA 59 6.10e+01 a.4.1.3 59803 2fa8A 105 6.11e+01 1bmv2 374 6.11e+01 1bmv2 3cla 213 6.12e+01 3cla c.43.1.1 32610 1evlA 401 6.18e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1e4mM 501 6.26e+01 1e70M c.1.8.4 59226 1hdoA 206 6.31e+01 1he2A c.2.1.2 60965 1poxA 585 6.37e+01 1poxA c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2f06A 144 6.46e+01 1j2jB 45 6.48e+01 a.7.8.1 84017 2eifA 136 6.57e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1el4A 195 6.73e+01 1ej3A a.39.1.5 59453 2b6cA 220 6.74e+01 1r94A 118 6.76e+01 b.124.1.1 97251 1muwA 386 6.78e+01 c.1.15.3 79495 2axyA 73 6.84e+01 2bzgA 232 6.86e+01 1vddA 228 6.86e+01 e.49.1.1 108519 1mi1A 414 6.96e+01 a.169.1.1,b.55.1.6 79137,79138 1g4wR 383 7.08e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1vdmA 153 7.08e+01 1jfbA 404 7.11e+01 a.104.1.1 66624 1pfsA 78 7.14e+01 1pfsA b.40.4.7 25391 2bh1A 250 7.15e+01 1feuA 206 7.17e+01 1feuA b.53.1.1 59801 1pyoA 167 7.21e+01 c.17.1.1 95370 1f24A 402 7.23e+01 1rom a.104.1.1 18953 1fcyA 236 7.27e+01 2lbd a.123.1.1 19282 1bebA 162 7.32e+01 1bebA b.60.1.1 27115 1jf2A 195 7.45e+01 1ej3A a.39.1.5 62930 1fa0A 537 7.51e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1r0pA 312 7.52e+01 d.144.1.7 96734 1jfzA 154 7.59e+01 a.149.1.1 66655 1xg5A 279 7.65e+01 2gaxA 135 7.66e+01 1mtpA 323 7.66e+01 e.1.1.1 85107 1x1tA 260 7.67e+01 1kafA 108 7.68e+01 d.199.1.1 68372 1tjyA 316 7.69e+01 c.93.1.1 107062 1v65A 64 7.70e+01 a.212.1.1 108393 1vjoA 393 7.74e+01 c.67.1.3 100827 1ufzA 83 7.76e+01 a.5.9.1 107821 2c36A 285 7.76e+01 1to2I 64 7.78e+01 2f2lA 167 7.85e+01 1blxA 326 7.86e+01 1hcl d.144.1.7 41596 2cspA 130 7.91e+01 1chmA 401 7.98e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 2bbvA 363 8.06e+01 2bbvA b.121.4.4 23323 1k8kB 394 8.08e+01 c.55.1.1 68307 1ejdA 419 8.08e+01 1uae d.68.2.2 39576 1lssA 140 8.11e+01 c.2.1.9 74246 1b12A 248 8.20e+01 1b12A b.87.1.2 28388 1zymA 258 8.22e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1pymA 295 8.27e+01 1pymA c.1.12.7 29308 1nmoA 247 8.28e+01 c.135.1.1 91980 1pbgA 468 8.40e+01 1e70M c.1.8.4 28946 1ln4A 104 8.44e+01 d.68.4.1 74043 1gxjA 186 8.46e+01 d.215.1.1 70707 1rvkA 382 8.54e+01 c.1.11.2,d.54.1.1 97928,97929 1z7xW 461 8.54e+01 1jsdA 319 8.56e+01 b.19.1.2 63258 1n2eA 300 8.56e+01 c.26.1.4 85268 1yovA 537 8.57e+01 1lb2B 84 8.62e+01 a.60.3.1 77871 1wt9B 123 8.64e+01 2f6sA 201 8.70e+01 1gln 468 8.85e+01 1gln a.97.1.1,c.26.1.1 18752,31588 1lba 146 8.88e+01 1lba d.118.1.1 41062 1bxm 99 8.88e+01 1bxm a.134.1.1 19618 1xqaA 113 8.90e+01 1a4yA 460 8.94e+01 1a4yA c.10.1.1 30852 2cdcA 366 8.97e+01 1jihA 531 8.99e+01 d.240.1.1,e.8.1.7 90374,90375