# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1t3gA 159 8.78e-01 1s9uA 207 2.54e+00 a.184.1.1 105390 1qoyA 318 6.62e+00 1qoyA h.4.4.1 45788 1wdyA 285 7.25e+00 1vmaA 306 7.51e+00 a.24.13.1,c.37.1.10 108887,108888 1v76A 96 8.95e+00 1htjF 210 1.27e+01 1htjF a.91.1.1 61254 1vig 71 1.52e+01 1vih d.51.1.1 38806 1iro 54 1.62e+01 1rb9 g.41.5.1 45223 2cspA 130 1.95e+01 1t71A 281 2.14e+01 1uanA 227 2.45e+01 c.134.1.1 99135 1ek8A 185 2.66e+01 1ek8A d.67.3.1 59444 1o26A 232 2.72e+01 d.207.1.1 86566 1v5mA 136 2.76e+01 b.55.1.1 108379 1regX 122 2.76e+01 1regX d.58.27.1 39406 1umhA 184 2.89e+01 b.18.1.21 99605 2cw5A 255 2.90e+01 2bl8A 103 3.02e+01 1xvqA 175 3.05e+01 1yk4A 52 3.07e+01 1f0cA 305 3.15e+01 1c8oA e.1.1.1 42676 1d9cA 121 3.21e+01 1d9cA a.26.1.3 16901 1bq9A 54 3.45e+01 1rb9 g.41.5.1 45238 1brfA 53 3.47e+01 1rb9 g.41.5.1 45236 1tzbA 302 3.50e+01 c.80.1.1 107470 1iapA 211 3.51e+01 a.91.1.1 62119 1y7bA 542 3.59e+01 1kq6A 141 3.61e+01 d.189.1.1 91020 1x9iA 302 3.61e+01 1wc9A 169 3.66e+01 1sz7A 200 3.74e+01 1o7kA 131 3.76e+01 d.189.1.1 81144 1v5aA 28 3.77e+01 1otgA 125 3.80e+01 1otgA d.80.1.2 39831 1dun 134 3.81e+01 1dun b.85.4.1 28371 1rdg 53 4.01e+01 1rb9 g.41.5.1 45221 2f6sA 201 4.17e+01 1iseA 185 4.38e+01 d.67.3.1 90691 2covD 104 4.47e+01 1x1mA 107 4.48e+01 1mhnA 59 4.55e+01 b.34.9.1 84964 1ytlA 174 4.64e+01 1g26A 31 4.83e+01 1g26A g.3.16.1 44381 1k7kA 221 4.89e+01 c.51.4.1 72104 2bc4A 211 4.93e+01 1z7mA 344 4.98e+01 1zo0A 126 5.00e+01 1ywzA 175 5.00e+01 1cy5A 97 5.10e+01 1cy5A a.77.1.3 18430 1h5rA 293 5.11e+01 c.68.1.6 65623 1puzA 82 5.15e+01 a.218.1.1 104320 1rykA 69 5.16e+01 a.60.11.1 98105 1le6A 123 5.19e+01 a.133.1.2 73862 2sns 149 5.24e+01 1snc b.40.1.1 24860 1u5mA 73 5.30e+01 1ey4A 149 5.35e+01 1snc b.40.1.1 24815 1wiwA 290 5.39e+01 1t8sA 484 5.41e+01 c.56.2.1 106679 1o57A 291 5.47e+01 a.4.5.40,c.61.1.1 92483,92484 1hdmA 201 5.51e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 1xtmA 175 5.70e+01 1nqjA 119 5.71e+01 b.23.2.1 86031 2d83A 363 5.74e+01 1z3eA 132 5.79e+01 1nxiA 132 5.87e+01 d.58.47.1 86381 1wmaA 276 5.87e+01 1lgpA 116 5.96e+01 b.26.1.2 73890 1yovA 537 6.15e+01 1djtA 64 6.17e+01 1aho g.3.7.1 44132 1s7zA 117 6.21e+01 a.159.3.1 98715 1t77A 414 6.28e+01 1ws6A 171 6.33e+01 1l1eA 287 6.38e+01 c.66.1.18 73454 1fe0A 68 6.45e+01 1cc8A d.58.17.1 39345 1x79A 98 6.45e+01 1z8sA 146 6.47e+01 1prxA 224 6.60e+01 1prxA c.47.1.10 33076 1rb9 53 6.62e+01 1rb9 g.41.5.1 45214 1ruwA 69 6.74e+01 1ugpA 203 6.75e+01 d.149.1.1 107831 1jj2V 154 6.81e+01 1ffkT d.59.1.1 63107 1vqrA 297 6.87e+01 1wosA 364 6.96e+01 b.44.2.1,d.250.1.1 109468,109469 1twuA 139 7.18e+01 d.32.1.8 107413 1n3yA 198 7.19e+01 c.62.1.1 79976 2b68A 43 7.28e+01 1skz 119 7.41e+01 1skz g.3.15.1,g.3.15.1 44366,44367 1c28A 135 7.45e+01 1c28A b.22.1.1 23857 1s72W 154 7.48e+01 d.59.1.1 105342 1vlaA 150 7.50e+01 d.227.1.2 108735 1ireA 204 7.63e+01 d.149.1.1 76769 1fgkA 310 7.64e+01 1fgkA d.144.1.7 41693 2brqA 97 7.74e+01 1oi6A 205 7.78e+01 b.82.1.1 103940 1is1A 185 7.80e+01 d.67.3.1 83704 1ofnA 205 7.84e+01 b.82.1.1 92830 1vpgA 192 8.28e+01 6rxn 46 8.29e+01 1rb9 g.41.5.1 45222 1ooeA 236 8.32e+01 c.2.1.2 87196 1xaoA 121 8.35e+01 1f80D 81 8.78e+01 1acp a.28.1.1 59686 1q33A 292 8.78e+01 d.113.1.1 95657 1ufzA 83 8.82e+01 a.5.9.1 107821 2exnA 136 8.87e+01 2ayvA 166 8.89e+01 1vqoQ 96 8.93e+01