# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gz8A 299 1.42e-24 d.144.1.7 83405 1rdqE 350 4.44e-23 d.144.1.7 97314 2evaA 307 1.69e-22 1fgkA 310 2.82e-22 1fgkA d.144.1.7 41693 1p4oA 322 4.17e-22 d.144.1.7 87775 1ia8A 289 4.99e-22 1ia8A d.144.1.7 62112 1t4hA 290 5.37e-22 d.144.1.7 106420 1j1bA 420 2.41e-21 d.144.1.7 90758 2bikB 313 6.58e-21 1z57A 339 2.34e-20 1csn 298 3.98e-16 1csn d.144.1.7 41664 1e7uA 961 2.94e-02 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1e8yA 966 1.48e-01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1e2kA 331 4.58e-01 1qhiA c.37.1.1 31854 1cjaA 342 4.65e-01 1cjaA d.144.1.3 41708 1e8aA 91 9.94e-01 1b4cA a.39.1.2 17188 1cjcA 460 1.30e+00 1cjcA c.3.1.1,c.4.1.1 30319,30604 1f8rA 498 1.73e+00 1f8rA c.3.1.2,d.16.1.5 30410,37974 1hzdA 272 1.81e+00 c.14.1.3 65969 1a99A 344 3.15e+00 1pot c.94.1.1 35812 1je0A 236 3.53e+00 c.56.2.1 66581 1g6aA 271 3.92e+00 1btl e.3.1.1 42704 1dkzA 219 4.13e+00 1dkzA a.8.4.1,b.130.1.1 90345,90346 1tvxA 75 4.28e+00 1tvxA d.9.1.1 37441 1fs5A 266 4.39e+00 c.124.1.1 65044 1g7sA 594 4.90e+00 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1w1oA 534 5.04e+00 d.58.32.4,d.145.1.1 109071,109072 1gvnB 287 5.77e+00 c.37.1.21 76354 1inlA 296 6.01e+00 c.66.1.17 66220 1n4wA 504 6.35e+00 c.3.1.2,d.16.1.1 91676,91677 1gsoA 431 6.74e+00 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1gw5S 142 6.77e+00 d.110.4.2 70633 1i2sA 282 7.56e+00 e.3.1.1 71104 1jb3A 131 7.71e+00 1jc7A b.40.3.2 62833 1bjt 793 7.92e+00 1bjt e.11.1.1 43249 1ako 268 8.45e+00 1ako d.151.1.1 41779 1uebA 184 9.22e+00 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1whzA 70 9.72e+00 1f7lA 121 9.99e+00 1f7lA d.150.1.2 59666 1y8aA 332 1.00e+01 1c3pA 375 1.03e+01 1c3pA c.42.1.2 32606 1epxA 370 1.03e+01 1fbaA c.1.10.1 29150 1g0cA 364 1.11e+01 7a3hA c.1.8.3 60165 1m40A 263 1.13e+01 e.3.1.1 74437 1hztA 190 1.15e+01 1i9aA d.113.1.2 61459 1bupA 386 1.16e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1pwgA 349 1.17e+01 e.3.1.1 104340 1fpzA 212 1.18e+01 1fpzA c.45.1.1 59976 1ggzA 148 1.21e+01 a.39.1.5 70176 1em2A 229 1.26e+01 1em2A d.129.3.2 41321 2gk9A 426 1.30e+01 1kw4A 89 1.31e+01 a.60.1.2 73077 1kwfA 363 1.39e+01 a.102.1.2 73078 1r5rA 119 1.47e+01 a.39.2.1 97104 1g0sA 209 1.50e+01 1g0sA d.113.1.1 60187 1omrA 201 1.51e+01 a.39.1.5 93349 1hzoA 271 1.51e+01 e.3.1.1 71092 1t6cA 315 1.53e+01 c.55.1.8,c.55.1.8 106558,106559 1fxkC 133 1.60e+01 1fxkC a.2.5.1 15702 1qksA 567 1.60e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1oi7A 288 1.63e+01 c.2.1.8,c.23.4.1 87049,87050 1a0cA 438 1.63e+01 1a0cA c.1.15.3 29529 1nykA 165 1.68e+01 b.33.1.1 86408 1di1A 300 1.68e+01 1di1A a.128.1.4 19446 1y0yA 353 1.68e+01 1iy8A 267 1.69e+01 c.2.1.2 83774 1p1jA 533 1.69e+01 c.2.1.3,d.81.1.3 87687,87688 1szhA 161 1.70e+01 a.226.1.1 106157 1qnrA 344 1.71e+01 1qnoA c.1.8.3 28834 1c93A 265 1.72e+01 2ebn c.1.8.5 28998 1i27A 73 1.81e+01 1i27A a.4.5.30 61555 1pdo 135 1.82e+01 1pdo c.54.1.1 33376 1kid 203 1.86e+01 1derA c.8.5.1 30771 1xkzA 255 1.88e+01 1edt 271 1.90e+01 2ebn c.1.8.5 28993 1gveA 327 1.94e+01 c.1.7.1 70597 1vlyA 338 1.95e+01 b.44.2.1,d.250.1.1 108871,108872 1ju3A 583 1.97e+01 b.18.1.13,c.69.1.21 67300,67301 1g8iA 190 1.99e+01 1rec a.39.1.5 60363 1nu0A 138 1.99e+01 c.55.3.8 92165 1go3F 107 2.01e+01 a.60.8.2 65407 1u7lA 392 2.05e+01 1u4gA 301 2.07e+01 d.92.1.2 107670 1j6qA 136 2.10e+01 b.40.9.1 77091 1hi9A 274 2.17e+01 1hi9A c.99.1.1 61063 1kq3A 376 2.23e+01 e.22.1.2 68790 1i6aA 219 2.31e+01 c.94.1.1 61827 1gmyA 261 2.33e+01 d.3.1.1 76236 1eg5A 384 2.35e+01 1ecxA c.67.1.3 34429 1dciA 275 2.38e+01 1dciA c.14.1.3 30918 1bsg 266 2.44e+01 1btl e.3.1.1 42729 1jl2A 156 2.45e+01 c.55.3.1 66822 1ifrA 121 2.45e+01 b.1.16.1 71203 1gky 187 2.45e+01 1gky c.37.1.1 31839 1cliA 345 2.45e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 2ddrA 306 2.48e+01 1i9zA 347 2.50e+01 1i9yA d.151.1.2 62102 1xszA 356 2.51e+01 1huxA 270 2.52e+01 1huxA c.55.1.5 61278 1jw9B 249 2.52e+01 c.111.1.1 67377 2dpmA 284 2.54e+01 2dpmA c.66.1.28 34246 1jtvA 327 2.60e+01 c.2.1.2 84230 1c75A 71 2.64e+01 451c a.3.1.1 15796 1y0hA 105 2.64e+01 1a8y 367 2.68e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1dusA 194 2.72e+01 1dusA c.66.1.4 34182 1vpt 348 2.74e+01 3mag c.66.1.25 34207 1fepA 724 2.77e+01 1fepA f.4.3.3 43808 1c0pA 363 2.84e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1oafA 261 2.88e+01 a.93.1.1 86734 1woqA 267 2.88e+01 c.55.1.10,c.55.1.10 109462,109463 1f0lA 535 2.94e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1bueA 265 2.95e+01 1btl e.3.1.1 42727 1ls1A 295 2.95e+01 a.24.13.1,c.37.1.10 78170,78171 1cxzB 86 2.95e+01 1cxzB a.2.6.1 15705 1bgp 309 3.02e+01 1bgp a.93.1.1 18690 1im8A 244 3.05e+01 c.66.1.14 66212 1i76A 163 3.08e+01 1hfc d.92.1.11 61877 1cojA 212 3.09e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1uuzA 137 3.17e+01 d.233.1.1 100024 1cuk 203 3.19e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1p5zB 263 3.23e+01 c.37.1.1 87815 1uzvA 114 3.23e+01 1rl0A 255 3.25e+01 1eljA 381 3.28e+01 4mbp c.94.1.1 35791 1bif 469 3.30e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1xkpC 143 3.40e+01 1l5oA 356 3.41e+01 c.39.1.1 77711 1r6wA 322 3.42e+01 c.1.11.2,d.54.1.1 97165,97166 3bamA 213 3.44e+01 1bam c.52.1.3 33288 1mk0A 97 3.53e+01 d.226.1.1 79216 1dqpA 230 3.54e+01 1dqnA c.61.1.1 34069 1qf8A 182 3.57e+01 1qf8A g.41.4.1 45212 1a9xA 1058 3.57e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1cf7B 95 3.72e+01 1cf7B a.4.5.17 16152 1ea7A 310 3.72e+01 c.41.1.1 70086 1i9gA 280 3.76e+01 c.66.1.13 62090 1b8aA 438 3.76e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1ej6D 418 3.77e+01 i.7.1.1 45970 1dgfA 497 3.81e+01 1cf9A e.5.1.1 42782 1hf2A 210 3.83e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1m45A 148 3.83e+01 a.39.1.5 78598 1vqqA 646 3.86e+01 1ifqA 138 3.88e+01 1ifqA d.110.4.1 62350 1gvfA 286 3.92e+01 c.1.10.2 70599 1s9uA 207 3.94e+01 a.184.1.1 105390 2dfkA 402 3.94e+01 1ee8A 266 3.95e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1r2qA 170 3.99e+01 c.37.1.8 96874 1e9gA 286 4.02e+01 1wgjA b.40.5.1 59393 1xfsA 178 4.03e+01 d.129.3.5 109589 1eyeA 280 4.06e+01 1aj2 c.1.21.1 29672 1kjwA 295 4.06e+01 b.34.2.1,c.37.1.1 68643,68644 1dzlA 505 4.08e+01 1dzlA b.121.6.1 23586 1dbiA 280 4.12e+01 1gci c.41.1.1 32543 1ex2A 189 4.17e+01 1ex2A c.51.4.2 33225 1j55A 95 4.18e+01 a.39.1.2 77078 1chuA 540 4.19e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1bob 320 4.20e+01 1bob d.108.1.1 40816 1w3iA 293 4.21e+01 c.1.10.1 109152 1gjjA 168 4.26e+01 a.140.1.1,a.140.1.1 83291,83292 1jfrA 262 4.27e+01 1jfrA c.69.1.16 34724 1jdpA 441 4.29e+01 c.93.1.1 62906 1xd3A 230 4.40e+01 1xkpB 124 4.40e+01 1ia9A 280 4.45e+01 1ia9A d.144.1.5 62113 1ryiA 382 4.51e+01 1rm6A 769 4.53e+01 1hw1A 239 4.54e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1aquA 297 4.57e+01 1aquA c.37.1.5 31942 1tqhA 247 4.61e+01 c.69.1.29 107225 1izoA 417 4.61e+01 a.104.1.1 83851 1lyvA 306 4.63e+01 c.45.1.2 74348 1dzkA 157 4.65e+01 1obpA b.60.1.1 27096 1ooeA 236 4.69e+01 c.2.1.2 87196 1kolA 398 4.74e+01 b.35.1.2,c.2.1.1 77474,77475 1rhcA 330 4.74e+01 c.1.16.3 97468 1bw3 125 4.82e+01 1bw4 b.52.1.2 26899 1vybA 238 4.83e+01 d.151.1.1 108897 1dy9A 187 4.93e+01 1jxpA b.47.1.3 26400 1guiA 155 4.97e+01 b.18.1.14 76351 1jqnA 883 4.98e+01 c.1.12.3 77159 1yiiA 320 5.00e+01 1dbqA 289 5.01e+01 1qpzA c.93.1.1 35666 1h2wA 710 5.02e+01 b.69.7.1,c.69.1.4 76596,76597 1jpzA 473 5.03e+01 a.104.1.1 67069 1dzfA 215 5.06e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 1v2bA 177 5.16e+01 d.107.1.2 108279 1eu8A 409 5.18e+01 1eu8A c.94.1.1 59502 1f2tA 149 5.19e+01 1f2tA c.37.1.12 32373 1b4pA 217 5.20e+01 a.45.1.1,c.47.1.5 83158,83159 1g9gA 629 5.22e+01 a.102.1.2 83279 1h5wA 309 5.22e+01 e.27.1.1 65635 1dk8A 147 5.24e+01 1agrE a.91.1.1 18548 1ew6A 137 5.31e+01 1ewaA a.1.1.2 15637 1o7nA 449 5.34e+01 b.33.1.2,d.129.3.3 81162,81163 1ji7A 89 5.37e+01 a.60.1.1 71682 1cp2A 269 5.50e+01 1cp2A c.37.1.10 32269 1gtfA 74 5.50e+01 b.82.5.1 70460 1nh8A 304 5.56e+01 c.94.1.1,d.58.5.3 80507,80508 1g3mA 294 5.64e+01 c.37.1.5 83268 1a2zA 220 5.69e+01 1a2zA c.56.4.1 33794 1cb8A 678 5.71e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1fmjA 351 5.73e+01 c.37.1.5 59879 1avqA 228 5.75e+01 1avqA c.52.1.13 33326 1vhwA 253 5.78e+01 c.56.2.1 100706 1q52A 314 5.79e+01 c.14.1.3 95846 1grj 158 5.81e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1b0uA 262 5.83e+01 1b0uA c.37.1.12 32370 1ixh 321 5.86e+01 1ixh c.94.1.1 35761 1ts9A 102 5.86e+01 1k07A 263 5.91e+01 d.157.1.1 77218 1icpA 376 5.99e+01 1oyc c.1.4.1 62270 1j1iA 296 6.01e+01 c.69.1.10 83977 1oc7A 364 6.01e+01 c.6.1.1 86794 1byrA 155 6.07e+01 1byrA d.136.1.1 41450 1w6uA 302 6.11e+01 1na3A 91 6.12e+01 k.38.1.1 85481 1am9A 82 6.12e+01 1am9A a.38.1.1 17140 1b25A 619 6.16e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1d2nA 272 6.17e+01 1d2nA c.37.1.20 32428 1erjA 393 6.25e+01 1erjA b.69.4.1 27660 1bg6 359 6.31e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1uekA 275 6.32e+01 d.14.1.5,d.58.26.5 88483,88484 1qq5A 253 6.35e+01 1qq5A c.108.1.1 43327 1nq7A 244 6.45e+01 a.123.1.1 92047 1jljA 189 6.51e+01 c.57.1.1 63169 1oxjA 173 6.55e+01 a.60.1.2,a.118.1.13 87517,87518 1d9cA 121 6.56e+01 1d9cA a.26.1.3 16901 1e4fT 419 6.58e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1cs0A 1073 6.59e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1cr5A 189 6.59e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1eejA 216 6.59e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1rwiA 270 6.59e+01 b.68.9.1 97987 1kqfA 1015 6.60e+01 b.52.2.2,c.81.1.1 72871,72872 1bli 483 6.65e+01 1bli b.71.1.1,c.1.8.1 27715,28702 1w2fA 276 6.70e+01 d.143.1.3 109125 1j8mF 297 6.72e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1dj8A 89 6.77e+01 1bg8A a.57.1.1 17919 1vjvA 415 6.79e+01 d.3.1.9 108632 1sxrA 183 6.81e+01 d.118.1.1 106101 1fpoA 171 6.82e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1z8kA 193 6.86e+01 1l7lA 121 6.90e+01 b.18.1.16 77790 1d5tA 433 6.91e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1fyhB 229 6.92e+01 1jrhI b.1.2.1,b.1.2.1 22055,22056 1xkpA 246 6.98e+01 1ec7A 446 6.98e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1e25A 282 7.04e+01 1e25A e.3.1.1 42731 1h99A 224 7.05e+01 a.142.1.1,a.142.1.1 60814,60815 1vp6A 138 7.07e+01 1apyA 162 7.17e+01 1apyA d.153.1.5 42004 1s1fA 406 7.20e+01 1gd0A 122 7.21e+01 1dptA d.80.1.3 39834 1jfbA 404 7.22e+01 a.104.1.1 66624 1ctj 89 7.26e+01 1ctj a.3.1.1 15798 1x8qA 184 7.27e+01 1r5mA 425 7.31e+01 1dcoA 104 7.36e+01 1dcpA d.74.1.1 39680 2gfaA 119 7.41e+01 1fp2A 352 7.51e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1gqiA 708 7.52e+01 c.1.8.10,d.92.2.2 76279,76280 1g5cA 170 7.54e+01 1g5cA c.53.2.1 60264 1v8yA 170 7.54e+01 1ceo 343 7.63e+01 1ceo c.1.8.3 28808 1r77A 103 7.64e+01 1dtdA 303 7.66e+01 1aye c.56.5.1 33823 1k94A 165 7.69e+01 a.39.1.8 68333 1d7uA 433 7.71e+01 2dkb c.67.1.4 34439 1dxsA 80 7.72e+01 1cokA a.60.1.2 17944 1cpt 412 7.81e+01 1cpt a.104.1.1 18968 1fmcA 255 7.85e+01 1cydA c.2.1.2 29856 1hp8 68 7.91e+01 1hp8 a.17.1.1 16399 1d3vA 323 7.91e+01 1d3vA c.42.1.1 32559 1i7nA 309 7.98e+01 c.30.1.5,d.142.1.3 83681,83682 1o08A 221 8.09e+01 c.108.1.6 86525 1b8zA 90 8.09e+01 1huuA a.55.1.1 17902 1ehiA 377 8.10e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1vl2A 421 8.13e+01 c.26.2.1,d.210.1.1 108708,108709 1ignA 246 8.16e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 1uq5A 263 8.18e+01 d.165.1.1 99778 1alvA 173 8.19e+01 1alvA a.39.1.8 17370 1a3c 181 8.20e+01 1a3c c.61.1.1 34095 1sfxA 109 8.21e+01 a.4.5.50 105505 1iw0A 215 8.23e+01 a.132.1.1 83720 1jnyA 435 8.25e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1j6oA 268 8.25e+01 c.1.9.12 77088 1x74A 360 8.26e+01 1d0qA 103 8.31e+01 1d0qA g.41.3.2 45208 1c1yB 77 8.31e+01 1c1yB d.15.1.5 37618 1l8bA 190 8.34e+01 d.86.1.1 73683 1o97D 320 8.36e+01 c.26.2.3,c.31.1.2 81233,81234 1sqeA 109 8.42e+01 d.58.4.5 105908 1lfpA 249 8.47e+01 e.39.1.1 73885 1qsgA 265 8.53e+01 1eny c.2.1.2 29935 1s2wA 295 8.53e+01 c.1.12.7 98407 1hqsA 423 8.55e+01 1iso c.77.1.1 61154 1dlwA 116 8.55e+01 1dlyA a.1.1.1 14982 1us5A 314 8.55e+01 c.94.1.1 99856 1ls9A 91 8.60e+01 a.3.1.1 78177 1hdhA 536 8.60e+01 c.76.1.2 65805 1gtvA 214 8.70e+01 c.37.1.1 70537 1bea 127 8.71e+01 1bea a.52.1.2 17826 1iomA 377 8.77e+01 a.103.1.1 83698 1o2dA 371 8.78e+01 e.22.1.2 86591 2trxA 108 8.91e+01 1thx c.47.1.1 32719