# List of top-scoring protein chains for T0292.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zmuA 327 3.40e-44 1zmvA 327 5.67e-44 1gzkA 315 7.43e-44 d.144.1.7 83406 1gznA 335 7.55e-44 d.144.1.7 83407 1o6kA 336 7.56e-44 d.144.1.7 81091 1o6lA 337 7.59e-44 d.144.1.7 81092 1mryA 339 7.64e-44 d.144.1.7 91451 1y8gA 327 1.48e-43 2fh9A 274 3.28e-43 1cdkA 350 3.65e-43 1cdkA d.144.1.7 41620 1cmkE 351 3.65e-43 1cdkA d.144.1.7 41623 1ctpE 350 3.93e-43 1cdkA d.144.1.7 41622 1xh9A 350 4.45e-43 1q61A 350 4.89e-43 d.144.1.7 95955 2c1aA 351 5.18e-43 1xh8A 350 5.18e-43 1ydrE 350 6.05e-43 1cdkA d.144.1.7 41624 2eueA 275 6.81e-43 1jbpE 350 7.77e-43 1cdkA d.144.1.7 62849 1smhA 350 8.04e-43 d.144.1.7 105757 1fotA 318 8.44e-43 1cdkA d.144.1.7 59938 2erzE 351 8.47e-43 1l3rE 350 8.47e-43 d.144.1.7 73552 1q62A 350 8.85e-43 d.144.1.7 95956 1apmE 350 1.27e-42 1cdkA d.144.1.7 41628 1sykA 350 1.29e-42 1u7eA 350 2.26e-42 1rdqE 350 4.55e-42 d.144.1.7 97314 1a06 332 5.23e-42 1tkiA d.144.1.7 41634 1xjdA 345 1.32e-41 2bdwA 362 1.36e-40 1ol5A 282 1.70e-40 d.144.1.7 93310 1muoA 297 1.76e-40 d.144.1.7 85110 2bfxA 284 1.77e-40 1mq4A 272 1.85e-40 d.144.1.7 91391 2bfyA 284 2.20e-40 2c6dA 275 2.84e-40 2c6eA 283 2.88e-40 2bmcA 306 3.26e-40 1ol6A 282 3.74e-40 d.144.1.7 93311 1zrzA 364 4.28e-39 1uu9A 286 9.42e-39 d.144.1.7 100002 1z5mA 286 9.43e-39 1h1wA 289 9.44e-39 d.144.1.7 83460 1uu3A 310 9.54e-39 d.144.1.7 99999 2biyA 310 1.44e-38 1vzoA 355 4.08e-38 d.144.1.7 108971 1ql6A 298 5.53e-38 1cdkA d.144.1.7 41636 1yhwA 297 6.28e-38 1phk 298 6.98e-38 1cdkA d.144.1.7 41635 2phkA 277 9.40e-38 1cdkA d.144.1.7 41637 1yhvA 297 1.19e-37 2etrA 415 8.07e-37 1p4fA 293 1.03e-36 d.144.1.7 104063 1jksA 294 1.03e-36 d.144.1.7 71710 1wvwA 278 1.56e-36 2f2uA 402 2.78e-36 1wmkA 321 1.02e-35 2f57A 317 1.21e-35 2bvaA 292 2.48e-35 2cdzA 303 2.49e-35 2acxA 576 6.69e-35 2c30A 321 7.70e-35 1ia8A 289 1.86e-34 1ia8A d.144.1.7 62112 2br1A 297 1.86e-34 1kobA 387 5.93e-34 1tkiA d.144.1.7 41640 1nxkA 400 1.02e-33 d.144.1.7 92302 1koa 491 1.26e-33 1tkiA b.1.1.4,d.144.1.7 21712,41642 1omwA 689 1.25e-32 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 2ac5A 316 2.70e-32 1u5rA 348 2.94e-32 2ac3A 316 1.17e-31 1h1rA 303 1.26e-31 d.144.1.7 76489 1oiuA 302 1.26e-31 d.144.1.7 103958 1oitA 299 1.41e-31 d.144.1.7 93075 1vywA 309 1.42e-31 d.144.1.7 108922 1qmzA 299 1.49e-31 1hcl d.144.1.7 41604 1gz8A 299 1.51e-31 d.144.1.7 83405 1w98A 298 1.53e-31 1pkdA 297 1.55e-31 d.144.1.7 88141 1jvpP 298 1.84e-31 d.144.1.7 67371 1giiA 298 2.16e-31 d.144.1.7 65218 1yxsA 293 4.45e-30 1yxtA 293 6.73e-30 1xqzA 300 6.75e-30 1xwsA 313 6.75e-30 1yhsA 273 6.90e-30 2bikB 313 7.44e-30 1s9jA 341 1.30e-29 1zy4A 303 3.44e-29 1tkiA 321 3.53e-29 1tkiA d.144.1.7 41638 1s9iA 354 4.95e-29 1ua2A 346 6.36e-29 1v0oA 288 1.18e-28 d.144.1.7 100243 1zydA 303 1.22e-28 1v0bA 288 1.24e-28 d.144.1.7 100241 1h4lA 292 1.33e-28 d.144.1.7 70871 1ob3A 288 1.37e-28 d.144.1.7 92747 1unlA 292 2.57e-28 1zxeA 303 2.97e-28 1t4hA 290 4.36e-28 d.144.1.7 106420 2evaA 307 5.81e-28 1mruA 311 8.49e-28 d.144.1.7 79425 1o6yA 299 1.02e-27 d.144.1.7 81106 1blxA 326 1.64e-27 1hcl d.144.1.7 41596 1xo2B 308 1.85e-27 1wzyA 368 2.14e-27 1tvoA 368 2.14e-27 1pmnA 364 2.20e-27 d.144.1.7 94907 3erk 364 2.22e-27 1hcl d.144.1.7 41654 1jnk 423 2.38e-27 1hcl d.144.1.7 41659 2erk 365 2.41e-27 1hcl d.144.1.7 41655 1pme 380 3.13e-27 1hcl d.144.1.7 41653 1gol 364 3.89e-27 1hcl d.144.1.7 41658 2b9hA 353 4.95e-27 1ukhA 369 5.31e-27 d.144.1.7 107913 2a19B 284 6.22e-27 2b9fA 353 6.43e-27 2g01A 370 7.00e-27 1cm8A 367 1.12e-26 1hcl d.144.1.7 41651 2baqA 365 1.17e-26 2ghlA 348 1.41e-26 1yw2A 360 1.42e-26 1ywrA 360 1.43e-26 1r3cA 366 1.47e-26 d.144.1.7 96906 1lewA 360 1.71e-26 d.144.1.7 73875 1p38 379 1.72e-26 1hcl d.144.1.7 41650 1zzlA 351 1.80e-26 1wbsA 360 1.81e-26 2balA 365 1.81e-26 1ian 366 1.81e-26 1hcl d.144.1.7 41645 1oz1A 372 1.82e-26 d.144.1.7 93780 2gfsA 372 1.82e-26 1a9u 379 1.82e-26 1hcl d.144.1.7 41646 1yqjA 366 1.83e-26 1ymiA 334 6.91e-26 1r0eA 391 9.24e-26 1gngA 378 9.26e-26 d.144.1.7 76239 1q5kA 414 9.51e-26 d.144.1.7 104537 1j1bA 420 9.54e-26 d.144.1.7 90758 1pyxA 422 9.55e-26 d.144.1.7 95383 1q41A 424 9.56e-26 d.144.1.7 95774 1opjA 293 9.75e-26 d.144.1.7 87230 1h8fB 350 1.14e-25 d.144.1.7 65734 1uv5A 350 1.14e-25 d.144.1.7 100029 1h8fA 352 1.14e-25 d.144.1.7 65733 2f4jA 287 1.15e-25 1o9uA 350 1.33e-25 d.144.1.7 92691 1uwjA 276 1.45e-25 d.144.1.7 100125 1uwhA 276 1.88e-25 d.144.1.7 100123 1jwhA 337 2.13e-25 d.144.1.7 71913 1pjkA 334 2.17e-25 d.144.1.7 88122 1opkA 495 2.83e-25 b.34.2.1,d.93.1.1,d.144.1.7 87232,87233,87234 2fo0A 495 3.05e-25 1mp8A 281 3.06e-25 d.144.1.7 91384 1oplA 537 3.19e-25 b.34.2.1,d.93.1.1,d.144.1.7 87235,87236,87237 1na7A 329 3.31e-25 d.144.1.7 91752 1om1A 332 5.88e-25 d.144.1.7 93347 1m2rA 327 6.21e-25 d.144.1.7 84760 1m2pA 325 6.75e-25 d.144.1.7 84758 2bujA 317 1.15e-24 1k9aA 450 2.37e-24 b.34.2.1,d.93.1.1,d.144.1.7 72188,72189,72190 1sm2A 264 3.03e-24 d.144.1.7 105754 1bygA 278 4.07e-24 1fmk d.144.1.7 41705 1fgkA 310 7.67e-24 1fgkA d.144.1.7 41693 1yvjA 290 1.05e-23 1jpaA 312 1.40e-23 d.144.1.7 67011 1fvrA 327 1.60e-23 d.144.1.7 60047 2b7aA 293 1.64e-23 1qpcA 279 1.74e-23 1fgkA d.144.1.7 41685 1k2pA 263 1.84e-23 d.144.1.7 72012 3lck 271 1.86e-23 1fmk d.144.1.7 41686 1oecA 316 1.96e-23 1y57A 452 1.98e-23 2ptk 453 1.99e-23 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24517,40457,41692 1fmk 452 1.99e-23 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24511,40436,41690 1yolA 283 2.06e-23 1yojA 283 2.09e-23 1mqbA 333 2.34e-23 d.144.1.7 91392 1kswA 452 2.89e-23 b.34.2.1,d.93.1.1,d.144.1.7 68860,68861,68862 1yi6A 276 3.05e-23 1qcfA 454 6.54e-23 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24498,40490,41680 1qpdA 279 8.10e-23 1fmk d.144.1.7 41687 1u59A 287 1.07e-22 d.144.1.7 107681 1ad5A 438 1.82e-22 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24505,40491,41681 1t46A 313 1.99e-22 d.144.1.7 106397 1t45A 331 2.05e-22 d.144.1.7 106396 1pkgA 329 2.07e-22 d.144.1.7 94830 1z57A 339 2.41e-22 1xbbA 291 2.93e-22 1ir3A 306 3.30e-22 1fmk d.144.1.7 41702 2b4sB 306 3.42e-22 1u54A 291 3.90e-22 d.144.1.7 107675 1irk 306 4.03e-22 1fmk d.144.1.7 41703 1u46A 291 4.09e-22 d.144.1.7 107656 1x8bA 289 4.66e-22 1rjbA 344 5.14e-22 d.144.1.7 97557 1vr2A 316 5.28e-22 1fgkA d.144.1.7 41701 1ywnA 316 5.37e-22 1i44A 306 5.66e-22 1fmk d.144.1.7 61664 2g15A 318 1.04e-21 1p14A 306 1.10e-21 d.144.1.7 87660 1r0pA 312 1.27e-21 d.144.1.7 96734 1lufA 343 1.48e-21 d.144.1.7 78223 1m14A 333 1.96e-21 d.144.1.7 78367 1xkkA 352 1.96e-21 1k3aA 299 2.93e-21 d.144.1.7 68098 1jqhA 308 3.42e-21 d.144.1.7 71793 1m7nA 322 3.48e-21 d.144.1.7 78738 1p4oA 322 4.24e-21 d.144.1.7 87775 1howA 373 4.95e-21 1hcl d.144.1.7 41679 1q8yA 373 4.98e-21 d.144.1.7 96234 2eu9A 355 4.02e-20 2exeA 357 4.26e-20 1y6bA 366 2.21e-18 1rw8A 301 1.28e-17 1vjyA 303 1.29e-17 d.144.1.7 108633 1py5A 326 1.35e-17 d.144.1.7 104389 1b6cB 342 1.47e-17 1b6cB d.144.1.7 41673 1ckiA 317 2.61e-16 1csn d.144.1.7 41660 2chlA 351 4.94e-16 2c47A 313 6.85e-16 1wbpA 397 1.13e-15 2csn 297 9.33e-15 1csn d.144.1.7 41665 1csn 298 9.34e-15 1csn d.144.1.7 41664 1zarA 282 1.17e-02 1zthA 258 5.62e-02 1z56C 264 2.18e+00 1dseA 292 4.42e+00 1ryc a.93.1.1 59130 1ccg 291 4.49e+00 1ryc a.93.1.1 18627 1ds4A 292 4.52e+00 1ryc a.93.1.1 59129 1b23P 405 4.76e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25689,25729,32124 1eft 405 4.80e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1pxuA 131 4.94e+00 b.40.3.2 104383 1jb3A 131 5.08e+00 1jc7A b.40.3.2 62833 1jc7A 131 5.10e+00 1jc7A b.40.3.2 62873 2c78A 405 5.47e+00 2c77A 405 5.49e+00 1exmA 405 5.49e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1aipA 405 5.57e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1bg6 359 5.81e+00 1bg6 a.100.1.5,c.2.1.6 18810,30214 1aj2 282 7.42e+00 1aj2 c.1.21.1 29665 1e17A 150 7.88e+00 2hfh a.4.5.14 16143 2c91A 338 8.01e+00 1qj4A 257 9.82e+00 1qj4A c.69.1.20 34796 1yb6A 256 9.87e+00 1sckA 257 1.00e+01 c.69.1.20 105421 1cpo 299 1.10e+01 1cpo a.39.3.1,a.39.3.1 17390,17391 2bp1A 360 1.29e+01 1xiqA 157 1.40e+01 1mj1A 405 1.57e+01 i.1.1.1 79175 1x6iA 91 1.73e+01 1mb8A 243 1.93e+01 a.40.1.1,a.40.1.1 84925,84926 2aq5A 402 1.93e+01 1y7bA 542 2.21e+01 1w6kA 732 2.37e+01 1w6jA 732 2.38e+01 1a03A 90 2.38e+01 4icb a.39.1.2 17157 1so8A 261 2.41e+01 c.2.1.2 98940 1u7tA 261 2.42e+01 1be4A 151 2.54e+01 1npk d.58.6.1 39090 1be4C 152 2.55e+01 1npk d.58.6.1 39092 1bhnA 152 2.60e+01 1npk d.58.6.1 39093 1sh5A 245 2.70e+01 a.40.1.1,a.40.1.1 105543,105544 1jqkA 639 2.88e+01 e.26.1.2 67101 1j7lA 264 2.93e+01 d.144.1.6 62697 1l8tA 263 2.93e+01 d.144.1.6 73702 1ugmA 125 3.31e+01 d.15.1.3 107827 1knwA 425 3.42e+01 b.49.2.3,c.1.6.1 90969,90970 1y0yA 353 3.50e+01 1rqgA 722 3.57e+01 a.27.1.1,c.26.1.1,g.41.1.1 105063,105064,105065 2ftcM 110 3.78e+01 1s7oA 113 3.83e+01 a.4.13.3 105354 2bkkA 264 3.86e+01 1seiA 130 3.97e+01 1seiA d.140.1.1 41463 1v49A 120 4.12e+01 1sfcB 83 4.15e+01 1sfcB h.1.15.1 45644 1h2oA 159 4.21e+01 d.129.3.1 90547 1ualA 274 4.26e+01 c.116.1.4 88383 1kao 167 4.32e+01 1ctqA c.37.1.8 32014 1j5pA 253 4.52e+01 d.81.1.3,c.2.1.3 71577,83092 1gveB 327 4.66e+01 c.1.7.1 70598 1i5kA 84 4.68e+01 5hpgA g.14.1.1 61789 1peqA 714 4.81e+01 a.98.1.1,c.7.1.2 104131,104132 1qb7A 236 4.82e+01 1qb7A c.61.1.1 34087 1urqB 75 4.88e+01 h.1.15.1 107995 1akq 147 5.12e+01 5nul c.23.5.1 31159 2cep 296 5.12e+01 1ryc a.93.1.1 18633 1bf6A 291 5.13e+01 1pscA c.1.9.3 29065 1wueA 386 5.13e+01 1zy2A 150 5.18e+01 1dn1B 267 5.27e+01 1dn1B a.47.2.1 17771 1e09A 159 5.30e+01 1bv1 d.129.3.1 59146 1iu8A 206 5.40e+01 c.56.4.1 71436 1fb7A 99 5.42e+01 1hvc b.50.1.1 26683 1f8rA 498 5.42e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 2gb3A 409 5.72e+01 1xfoA 357 5.88e+01 1vkzA 412 6.02e+01 b.84.2.1,c.30.1.1,d.142.1.2 108698,108699,108700 1kilB 62 6.26e+01 h.1.15.1 72519 1n7sB 68 6.40e+01 h.1.15.1 80272 1hvvA 75 6.61e+01 1hvvA h.1.15.1 45639 1jkmA 358 6.65e+01 1jkmA c.69.1.2 34633 1opoA 348 6.65e+01 b.121.4.7 87240 1jkmB 361 6.67e+01 1jkmA c.69.1.2 34634 1kb9C 385 6.81e+01 f.32.1.1,f.21.1.2 77315,77316 1w2dA 265 6.91e+01 d.143.1.3 109121 2ch9A 131 6.91e+01 2aotA 292 6.98e+01 1ybeA 449 7.10e+01 1h2hA 241 7.24e+01 d.81.1.3,c.2.1.3 70861,83058 1w2fA 276 7.27e+01 d.143.1.3 109125 1jthB 77 7.32e+01 h.1.15.1 67271 1ne2A 200 7.39e+01 c.66.1.32 85586 1jqeA 292 7.58e+01 c.66.1.19 71789 1b2iA 83 7.79e+01 5hpgA g.14.1.1 44640 1dqiA 124 8.15e+01 1do6A b.1.13.1 22357 1ad9B 219 8.37e+01 1gc1H b.1.1.1,b.1.1.2 20215,21227 1oy5A 257 8.50e+01 c.116.1.4 93718 1u0oC 208 8.52e+01 2gfgA 193 8.52e+01 1ibgH 217 8.57e+01 1igtB b.1.1.1,b.1.1.2 20049,21091 1br1B 150 8.75e+01 1wdcC a.39.1.5 17309