# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o6lA 337 3.55e-40 d.144.1.7 81092 1xh9A 350 1.84e-39 1apmE 350 4.84e-39 1cdkA d.144.1.7 41628 1rdqE 350 7.60e-39 d.144.1.7 97314 1xjdA 345 8.00e-39 1mq4A 272 1.54e-38 d.144.1.7 91391 2bfxA 284 3.12e-38 2bdwA 362 3.41e-38 1uu3A 310 9.80e-37 d.144.1.7 99999 1phk 298 1.42e-36 1cdkA d.144.1.7 41635 1h1wA 289 1.89e-36 d.144.1.7 83460 1zrzA 364 3.04e-36 2eueA 279 7.30e-36 1jksA 294 1.21e-35 d.144.1.7 71710 1yhvA 297 2.23e-35 1vzoA 355 5.52e-35 d.144.1.7 108971 1f3mC 297 8.41e-35 1hcl d.144.1.7 41677 1p4fA 293 1.77e-34 d.144.1.7 104063 2f57A 317 6.30e-34 1ia8A 289 1.94e-33 1ia8A d.144.1.7 62112 2c30A 321 2.96e-33 2bvaA 292 3.77e-32 1omwA 689 2.25e-31 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1gz8A 299 6.95e-31 d.144.1.7 83405 1hcl 298 1.07e-30 1hcl d.144.1.7 41593 2ac3A 316 2.63e-30 2ac5A 316 2.97e-30 1tkiA 321 5.13e-30 1tkiA d.144.1.7 41638 1xwsA 313 8.13e-30 2bikB 313 8.88e-30 1s9jA 341 4.89e-29 1t4hA 290 6.42e-29 d.144.1.7 106420 1zy4A 303 5.42e-28 1o6yA 299 5.99e-28 d.144.1.7 81106 2evaA 307 6.75e-28 1blxA 326 2.51e-27 1hcl d.144.1.7 41596 2a19B 284 3.23e-27 3erk 364 6.61e-27 1hcl d.144.1.7 41654 2b9hA 353 7.08e-27 1tvoA 368 8.56e-27 1pme 380 1.54e-26 1hcl d.144.1.7 41653 1pmnA 364 2.72e-26 d.144.1.7 94907 1ymiA 334 3.66e-26 1opjA 293 4.12e-26 d.144.1.7 87230 1zzlA 351 7.90e-26 1r3cA 366 8.57e-26 d.144.1.7 96906 1j1bA 420 1.04e-25 d.144.1.7 90758 2b7aA 293 1.12e-25 1ywrA 360 1.28e-25 1om1A 332 1.36e-25 d.144.1.7 93347 1wbsA 360 1.43e-25 1zz2A 360 1.54e-25 1m2rA 327 2.32e-25 d.144.1.7 84760 2gfsA 372 4.27e-25 1mp8A 281 4.67e-25 d.144.1.7 91384 1xbbA 291 6.21e-25 1qpcA 279 7.78e-25 1fgkA d.144.1.7 41685 1u59A 287 1.67e-24 d.144.1.7 107681 1fvrA 327 1.93e-24 d.144.1.7 60047 1x8bA 289 3.37e-24 1fgkA 310 8.03e-24 1fgkA d.144.1.7 41693 1ir3A 306 8.15e-24 1fmk d.144.1.7 41702 1u46A 291 1.00e-23 d.144.1.7 107656 1jpaA 312 1.27e-23 d.144.1.7 67011 1t46A 313 1.31e-23 d.144.1.7 106397 1z57A 339 1.61e-23 1r0pA 312 2.56e-22 d.144.1.7 96734 1p4oA 322 3.04e-22 d.144.1.7 87775 1ywnA 316 1.30e-21 2eu9A 355 3.89e-21 1q8yA 373 9.80e-21 d.144.1.7 96234 1howA 373 1.61e-20 1hcl d.144.1.7 41679 1vjyA 303 2.12e-20 d.144.1.7 108633 1py5A 326 4.11e-20 d.144.1.7 104389 1ckiA 317 9.05e-19 1csn d.144.1.7 41660 1wbpA 397 2.83e-18 1csn 298 3.35e-17 1csn d.144.1.7 41664 1tqmA 282 1.70e-05 a.4.5.56,d.144.1.9 107236,107237 1zarA 282 2.03e-05 1zthA 258 1.89e-03 1e17A 150 4.24e-02 2hfh a.4.5.14 16143 1ha3A 405 6.11e-01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1jb3A 131 6.83e-01 1jc7A b.40.3.2 62833 1j7lA 264 8.02e-01 d.144.1.6 62697 1z5rA 306 1.11e+00 2bkkA 264 1.46e+00 1exmA 405 2.05e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1z7mA 344 2.09e+00 1nw1A 429 2.45e+00 d.144.1.8 86286 1x6iA 91 2.67e+00 1e8yA 966 2.87e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1pu1A 94 2.98e+00 d.266.1.1 104307 1d2nA 272 3.01e+00 1d2nA c.37.1.20 32428 2c78A 405 3.32e+00 1e7uA 961 3.34e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1nsf 273 3.54e+00 1d2nA c.37.1.20 32429 1nd4A 264 3.66e+00 d.144.1.6 91815 1lm5A 214 4.18e+00 d.211.2.1 74029 2bp1A 360 4.34e+00 2a65A 519 4.96e+00 1sd4A 126 5.66e+00 a.4.5.39 105428 1ugmA 125 5.85e+00 d.15.1.3 107827 1f0jA 377 6.93e+00 1f0jA a.211.1.2 19346 1z7aA 308 6.99e+00 1ls1A 295 8.03e+00 a.24.13.1,c.37.1.10 78170,78171 1w7jB 151 8.74e+00 1ur3M 319 9.51e+00 c.1.7.1 99806 1fepA 724 9.88e+00 1fepA f.4.3.3 43808 1ifqA 138 9.96e+00 1ifqA d.110.4.1 62350 1szhA 161 1.01e+01 a.226.1.1 106157 1okrA 123 1.04e+01 a.4.5.39 93269 2cwoA 197 1.08e+01 1x92A 199 1.12e+01 1usgA 346 1.16e+01 c.93.1.1 99864 1iu8A 206 1.21e+01 c.56.4.1 71436 2lbp 346 1.28e+01 2liv c.93.1.1 35709 1txqA 93 1.28e+01 2ct9A 208 1.33e+01 1q1vA 70 1.33e+01 a.159.4.1 104479 1dtdA 303 1.43e+01 1aye c.56.5.1 33823 1kwmA 402 1.47e+01 c.56.5.1,d.58.3.1 73079,73080 1a0p 290 1.51e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1uuzA 137 1.58e+01 d.233.1.1 100024 1o86A 589 1.61e+01 d.92.1.5 81177 1o1zA 234 1.73e+01 c.1.18.3 86555 2arcA 164 1.74e+01 2arcA b.82.4.1 28148 1wznA 252 1.75e+01 1iujA 106 1.87e+01 d.58.4.5 90701 1uddA 226 1.87e+01 a.132.1.3 107776 1wlzA 105 1.96e+01 1w2fA 276 1.99e+01 d.143.1.3 109125 1ad2 228 2.00e+01 1ad2 e.24.1.1 43353 1vdmA 153 2.01e+01 1go3F 107 2.04e+01 a.60.8.2 65407 1gwiA 411 2.07e+01 a.104.1.1 76364 1yb3A 175 2.11e+01 1gveA 327 2.14e+01 c.1.7.1 70597 2ng1 293 2.15e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 2gq1A 332 2.17e+01 2cqeA 98 2.17e+01 1u7kA 131 2.21e+01 1ycqA 107 2.21e+01 1ycqA a.42.1.1 17419 1q1hA 110 2.35e+01 a.4.5.41 95580 1cpt 412 2.35e+01 1cpt a.104.1.1 18968 1i7hA 111 2.38e+01 d.15.4.1 71122 1iooA 196 2.43e+01 d.124.1.1 71250 1tuzA 118 2.47e+01 1upkA 341 2.57e+01 a.118.1.15 99758 2be4A 272 2.61e+01 1yixA 265 2.61e+01 1uzeA 589 2.65e+01 d.92.1.5 108174 1sheA 103 2.68e+01 d.274.1.1 105551 1yucA 255 2.68e+01 2ftzA 284 2.73e+01 1s72S 85 2.77e+01 d.12.1.1 105338 1fnsA 196 2.77e+01 1auq c.62.1.1 34136 4ubpA 101 2.79e+01 1ubpA d.8.1.1 37352 1uuqA 440 2.79e+01 c.1.8.3 100015 1rf6A 427 2.89e+01 d.68.2.2 97366 1jj2R 84 2.90e+01 1ffkP d.12.1.1 63103 1wgwA 99 3.00e+01 1yqyA 523 3.00e+01 1zkoA 136 3.02e+01 1wfxA 186 3.10e+01 1ji7A 89 3.11e+01 a.60.1.1 71682 1vdxA 184 3.12e+01 2vsgA 358 3.14e+01 2vsgA h.4.1.1 45780 2ctc 307 3.14e+01 1aye c.56.5.1 33802 1dqpA 230 3.28e+01 1dqnA c.61.1.1 34069 2f0aA 98 3.30e+01 1wj7A 104 3.30e+01 1z8uA 102 3.38e+01 1a3c 181 3.45e+01 1a3c c.61.1.1 34095 1zxkA 98 3.47e+01 1dqnA 230 3.50e+01 1dqnA c.61.1.1 34067 2coeA 120 3.58e+01 2fnaA 357 3.66e+01 1rfeA 162 3.68e+01 1vqoS 85 3.73e+01 1y8aA 332 3.75e+01 2sqcA 631 3.84e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1te2A 226 3.88e+01 c.108.1.6 106792 1us8A 147 3.91e+01 c.37.1.12 99859 1oglA 283 4.00e+01 a.204.1.1 92922 1qbkB 890 4.08e+01 1qbkB a.118.1.1 19127 1va0A 239 4.09e+01 1oahA 519 4.09e+01 a.138.1.3 86736 1syyA 346 4.10e+01 a.25.1.2 106126 1vsrA 136 4.18e+01 1vsrA c.52.1.15 33332 1aj2 282 4.25e+01 1aj2 c.1.21.1 29665 1rr7A 129 4.33e+01 a.4.1.14 105075 1y01A 102 4.34e+01 1uu1A 335 4.43e+01 c.67.1.1 99993 1ztxH 219 4.54e+01 1eu8A 409 4.57e+01 1eu8A c.94.1.1 59502 1qusA 322 4.64e+01 1ltm d.2.1.6 36991 1uqtA 482 4.72e+01 c.87.1.6 99794 1aj8A 371 4.86e+01 1aj8A a.103.1.1 18900 1vgjA 184 4.89e+01 1vflA 356 4.90e+01 1omrA 201 4.92e+01 a.39.1.5 93349 1gklA 297 4.95e+01 c.69.1.2 65250 1uhvA 500 4.98e+01 b.71.1.2,c.1.8.3 99402,99403 1ufyA 122 5.00e+01 d.79.1.2 88489 1vchA 175 5.01e+01 2ac4A 309 5.02e+01 1wb4A 297 5.07e+01 3bamA 213 5.08e+01 1bam c.52.1.3 33288 1kutA 230 5.15e+01 d.143.1.1 73017 2apoA 357 5.21e+01 1rec 201 5.23e+01 1rec a.39.1.5 17326 1nnlA 225 5.26e+01 c.108.1.4 85906 2b5rC 165 5.29e+01 1tx4A 198 5.29e+01 1tx4A a.116.1.1 19098 2aeuA 374 5.31e+01 1io7A 368 5.35e+01 1f4tA a.104.1.1 18971 1n40A 396 5.43e+01 a.104.1.1 79977 2es9A 115 5.45e+01 2c6yA 111 5.50e+01 1v8aA 265 5.51e+01 c.72.1.2 100494 1liiA 363 5.53e+01 c.72.1.1 73921 1hx6A 394 5.55e+01 1cjdA b.121.2.1,b.121.2.1 58995,58996 1cb8A 678 5.56e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2ac2A 309 5.59e+01 1fcjA 322 5.66e+01 1oasA c.79.1.1 35289 1tzyD 103 5.67e+01 a.22.1.1 107533 2a19A 175 5.71e+01 1dozA 309 5.72e+01 1ak1 c.92.1.1 35592 1exbA 332 5.75e+01 1qrqA c.1.7.1 28666 1n8vA 112 5.81e+01 a.118.21.1 85457 1wdcC 156 5.82e+01 1wdcC a.39.1.5 17317 1tllA 688 5.86e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 1ylhA 560 5.90e+01 1qczA 169 5.98e+01 1qczA c.23.8.1 31276 1y63A 184 6.01e+01 1vc3B 97 6.05e+01 1kw4A 89 6.05e+01 a.60.1.2 73077 1li4A 432 6.12e+01 c.2.1.4,c.23.12.3 84616,84617 1l6oA 95 6.18e+01 b.36.1.1 84534 1onqA 283 6.20e+01 b.1.1.2,d.19.1.1 93365,93366 3sdhA 146 6.25e+01 3sdhA a.1.1.2 14984 1j7gA 144 6.29e+01 c.110.1.1 84130 1ovnA 248 6.29e+01 a.71.1.1,c.47.1.7 93602,93603 1o6dA 163 6.33e+01 c.116.1.3 92567 1khyA 148 6.35e+01 a.174.1.1 77410 1cpo 299 6.46e+01 1cpo a.39.3.1,a.39.3.1 17390,17391 1d4aA 273 6.48e+01 1d4aA c.23.5.3 31219 1ymtA 246 6.48e+01 2bo9A 308 6.57e+01 1t4fM 110 6.58e+01 2axiA 115 6.66e+01 1w2yA 229 6.73e+01 a.204.1.1 109140 1m4lA 307 6.85e+01 c.56.5.1 78604 1vh4A 435 6.86e+01 b.80.6.1 100640 1tl2A 236 6.91e+01 1tl2A b.67.1.1 27541 1avpA 204 6.93e+01 1avpA d.3.1.7 37132 1kfuL 699 6.94e+01 a.39.1.8,b.14.1.1,d.3.1.3 68571,68572,68573 1opoA 348 7.00e+01 b.121.4.7 87240 1yiiA 320 7.07e+01 2absA 383 7.07e+01 1kx5B 102 7.07e+01 a.22.1.1 77594 1txjA 171 7.09e+01 b.88.1.2 107424 1j7nA 776 7.13e+01 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1wzuA 300 7.17e+01 1ash 150 7.18e+01 1ash a.1.1.2 15622 2ahqA 76 7.19e+01 1go3E 187 7.22e+01 b.40.4.5,d.230.1.1 83054,83055 2gaiA 633 7.35e+01 1w6kA 732 7.42e+01 1koe 172 7.46e+01 1koe d.169.1.5 42448 1xo5A 183 7.51e+01 1f9aA 168 7.54e+01 1f9aA c.26.1.3 31602 1nm2A 317 7.58e+01 c.19.1.1,d.58.23.1 80654,80655 1pxfA 111 7.65e+01 b.40.4.4 88341 1bf6A 291 7.74e+01 1pscA c.1.9.3 29065 1kxoA 184 7.75e+01 b.60.1.1 84475 1pjqA 457 7.80e+01 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1zuwA 272 7.85e+01 1souA 194 7.89e+01 c.124.1.6 105858 1c4xA 285 7.91e+01 1c4xA c.69.1.10 34684 1b8gA 429 7.97e+01 1b8gA c.67.1.4 34499 1tmy 120 7.99e+01 1dbwA c.23.1.1 31083 1ajsA 412 8.01e+01 1ajsA c.67.1.1 34276 1yioA 208 8.02e+01 1fezA 256 8.04e+01 1fezA c.108.1.3 43343 1oaa 259 8.06e+01 1oaa c.2.1.2 29829 2fm9A 215 8.14e+01 1hdkA 141 8.16e+01 b.29.1.3 65807 1twdA 256 8.25e+01 c.1.30.1 107397 1rcqA 357 8.33e+01 b.49.2.2,c.1.6.1 104882,104883 1k94A 165 8.36e+01 a.39.1.8 68333 2a1xA 308 8.39e+01 1ofuA 320 8.40e+01 c.32.1.1,d.79.2.1 86972,86973 1p99A 295 8.43e+01 c.94.1.1 94384 1yfnA 118 8.44e+01 1b5l 172 8.50e+01 1b5l a.26.1.3 16900 5ukdA 194 8.61e+01 1zin c.37.1.1 31851 1ka2A 499 8.62e+01 d.92.1.5 77305 1or4A 178 8.75e+01 a.1.1.2 93447 1ijbA 202 8.79e+01 c.62.1.1 71229 1wgzA 510 8.86e+01 1soxA 466 8.88e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 1iapA 211 8.91e+01 a.91.1.1 62119 1rkbA 173 8.98e+01