# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1opjA 293 1.61e-33 d.144.1.7 87230 1ir3A 306 1.39e-32 1fmk d.144.1.7 41702 1fgkA 310 2.58e-32 1fgkA d.144.1.7 41693 1qpcA 279 2.94e-32 1fgkA d.144.1.7 41685 1jpaA 312 3.49e-32 d.144.1.7 67011 1lufA 343 3.67e-32 d.144.1.7 78223 3lck 271 3.87e-32 1fmk d.144.1.7 41686 1p4oA 322 9.11e-32 d.144.1.7 87775 1t46A 313 9.75e-32 d.144.1.7 106397 1irk 306 1.04e-31 1fmk d.144.1.7 41703 1fmk 452 2.04e-31 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24511,40436,41690 1jqhA 308 2.28e-31 d.144.1.7 71793 1fvrA 327 8.60e-31 d.144.1.7 60047 1r0pA 312 9.03e-31 d.144.1.7 96734 2b7aA 293 1.48e-30 1mp8A 281 6.87e-30 d.144.1.7 91384 1u59A 287 7.36e-30 d.144.1.7 107681 1mq4A 272 7.83e-30 d.144.1.7 91391 1u46A 291 1.03e-29 d.144.1.7 107656 1xbbA 291 1.39e-29 1ywnA 316 2.75e-29 1yhvA 297 3.82e-29 2evaA 307 6.22e-29 2bfxA 284 8.09e-29 2bdwA 362 1.10e-28 2f57A 317 1.83e-28 1f3mC 297 2.35e-28 1hcl d.144.1.7 41677 1xjdA 345 2.57e-28 1jksA 294 4.71e-28 d.144.1.7 71710 1ia8A 289 6.92e-28 1ia8A d.144.1.7 62112 1o6lA 337 7.14e-28 d.144.1.7 81092 1hcl 298 8.62e-28 1hcl d.144.1.7 41593 1gz8A 299 1.09e-27 d.144.1.7 83405 2c30A 321 1.11e-27 1phk 298 1.54e-27 1cdkA d.144.1.7 41635 1e1xA 299 1.79e-27 1hcl d.144.1.7 59157 1jvpP 298 2.80e-27 d.144.1.7 67371 1p4fA 293 3.91e-27 d.144.1.7 104063 1h1wA 289 5.20e-27 d.144.1.7 83460 1uu3A 310 5.46e-27 d.144.1.7 99999 1cmkE 350 6.06e-27 1cdkA d.144.1.7 41623 1q8uA 350 6.99e-27 d.144.1.7 96230 1cdkA 350 7.37e-27 1cdkA d.144.1.7 41620 1xh9A 350 9.18e-27 1s9jA 341 1.33e-26 2bvaA 292 1.70e-26 1zrzA 364 1.71e-26 1apmE 350 1.84e-26 1cdkA d.144.1.7 41628 1kobA 387 1.90e-26 1tkiA d.144.1.7 41640 1vzoA 355 2.81e-26 d.144.1.7 108971 1rdqE 350 6.86e-26 d.144.1.7 97314 2eueA 279 1.06e-25 1blxA 326 1.08e-25 1hcl d.144.1.7 41596 1o6yA 299 1.27e-25 d.144.1.7 81106 1tvoA 368 3.27e-25 1t4hA 290 3.40e-25 d.144.1.7 106420 3erk 364 3.96e-25 1hcl d.144.1.7 41654 1zy4A 303 5.50e-25 1pme 380 7.59e-25 1hcl d.144.1.7 41653 2b9hA 353 1.06e-24 1tkiA 321 1.30e-24 1tkiA d.144.1.7 41638 2a19B 284 2.27e-24 1omwA 689 3.27e-24 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1xwsA 313 3.54e-24 2bikB 313 3.78e-24 1pmnA 364 6.10e-24 d.144.1.7 94907 1q41A 424 1.01e-23 d.144.1.7 95774 1wbsA 360 1.54e-23 1zzlA 351 1.55e-23 1ywrA 360 1.79e-23 1r3cA 366 1.86e-23 d.144.1.7 96906 1j1bA 420 2.05e-23 d.144.1.7 90758 2ac5A 316 2.25e-23 2ac3A 316 3.10e-23 2gfsA 372 3.35e-23 1zz2A 360 6.10e-23 1py5A 326 1.90e-22 d.144.1.7 104389 1b6cB 342 2.84e-22 1b6cB d.144.1.7 41673 1vjyA 303 4.08e-22 d.144.1.7 108633 1ymiA 334 7.12e-22 1z57A 339 2.15e-21 1a6o 332 2.26e-21 1a6o 1om1A 332 3.07e-21 d.144.1.7 93347 1x8bA 289 3.18e-21 1lpuA 332 3.76e-21 d.144.1.7 74177 1lp4A 332 3.79e-21 d.144.1.7 74170 1jwhA 337 3.97e-21 d.144.1.7 71913 1m2rA 327 6.54e-21 d.144.1.7 84760 2eu9A 355 5.77e-20 1wbpA 397 2.09e-19 1ckiA 317 1.39e-18 1csn d.144.1.7 41660 1howA 373 3.97e-18 1hcl d.144.1.7 41679 1q8yA 373 6.71e-18 d.144.1.7 96234 1csn 298 1.50e-16 1csn d.144.1.7 41664 1tqmA 282 3.86e-04 a.4.5.56,d.144.1.9 107236,107237 1zarA 282 1.15e-03 1j7lA 264 4.75e-01 d.144.1.6 62697 1e17A 150 5.05e-01 2hfh a.4.5.14 16143 1j7iA 264 8.75e-01 1j7iA d.144.1.6 62694 2ct9A 208 1.35e+00 1nd4A 264 2.18e+00 d.144.1.6 91815 2bkkA 264 3.10e+00 1zbsA 291 3.60e+00 2gnxA 365 3.79e+00 1g8iA 190 4.36e+00 1rec a.39.1.5 60363 1h6zA 913 4.56e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 2fnaA 357 5.12e+00 2c6yA 111 5.68e+00 1nw1A 429 7.33e+00 d.144.1.8 86286 1esc 306 9.03e+00 1esc c.23.10.1 31334 1e4mM 501 1.08e+01 1e70M c.1.8.4 59226 1txqA 93 1.21e+01 1e6qM 501 1.26e+01 1e70M c.1.8.4 28920 1zxoA 291 1.26e+01 1f07A 321 1.39e+01 1ezwA c.1.16.3 59560 1e70M 501 1.44e+01 1e70M c.1.8.4 28926 1lywA 97 1.64e+01 1lywA b.50.1.2 26861 1c3pA 375 1.88e+01 1c3pA c.42.1.2 32606 1zthA 258 1.99e+01 1bcpB 199 2.03e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1ki0A 253 2.03e+01 g.14.1.1,g.14.1.1,g.14.1.1 72493,72494,72495 1bxwA 172 2.06e+01 1bxwA f.4.1.1 43743 1wu4A 396 2.12e+01 1fadA 99 2.41e+01 1fadA a.77.1.2 18428 1lybA 97 2.76e+01 1smrA b.50.1.2 26857 2myr 501 2.78e+01 1xdfA 157 2.92e+01 1qnoA 344 3.09e+01 1qnoA c.1.8.3 28838 1gxqA 106 3.14e+01 a.4.6.1 70721 2comA 124 3.22e+01 2b0oE 301 3.26e+01 1zzpA 130 3.42e+01 1ksfX 758 3.45e+01 a.174.1.1,c.37.1.20,c.37.1.20 77522,77523,77524 1x92A 199 3.58e+01 1qnrA 344 3.73e+01 1qnoA c.1.8.3 28834 1cwwA 102 3.76e+01 1cy5A a.77.1.3 18434 1ala 321 3.93e+01 1avc a.65.1.1 18153 1yiiA 320 3.97e+01 1kblA 873 3.98e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1go4A 205 4.04e+01 d.135.1.1 70292 1qzgA 187 4.30e+01 b.40.4.3 96643 1b2iA 83 4.31e+01 5hpgA g.14.1.1 44640 1iznB 277 4.35e+01 e.43.1.2 83848 2b06A 155 4.36e+01 1cyx 205 4.59e+01 1cyx b.6.1.2 23023 1dik 874 4.68e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1dr9A 201 4.84e+01 1dr9A b.1.1.1,b.1.1.3 19762,21684 2ctdA 96 4.95e+01 1auiB 169 5.08e+01 1auiB a.39.1.5 17325 1w33A 181 5.12e+01 1x0rA 249 5.17e+01 1emn 82 5.24e+01 1emn g.3.11.1,g.3.11.1 44322,44323 1j24A 143 5.32e+01 c.52.1.20 84008 1qqiA 104 5.36e+01 1opc a.4.6.1 16233 1z0xA 220 5.37e+01 1x42A 232 5.42e+01 1top 162 5.42e+01 1ncx a.39.1.5 17223 1ncx 162 5.60e+01 1ncx a.39.1.5 17222 1wraA 308 5.64e+01 1y1xA 191 5.72e+01 1tib 269 5.75e+01 3tgl c.69.1.17 34738 1e6mA 128 5.76e+01 3chy c.23.1.1 31039 1gt6A 269 5.88e+01 c.69.1.17 76342 1w7jB 151 5.90e+01 1u7iA 136 5.94e+01 d.32.1.7 107724 1yhlA 362 6.15e+01 2fbyA 205 6.21e+01 1b6fA 159 6.22e+01 1bv1 d.129.3.1 41316 1ni4A 365 6.22e+01 c.36.1.11 85728 1pm4A 119 6.23e+01 b.135.1.1 94891 1fjgI 128 6.32e+01 1fjfI d.14.1.1 37559 1s5dA 240 6.33e+01 d.166.1.1 98541 1qg7A 67 6.35e+01 1a15A d.9.1.1 37449 1n9lA 109 6.39e+01 d.110.3.6 85468 1n40A 396 6.45e+01 a.104.1.1 79977 1sfxA 109 6.49e+01 a.4.5.50 105505 1qmrA 159 6.56e+01 1bv1 d.129.3.1 41314 1tw0A 157 6.63e+01 1fo1A 271 6.68e+01 1fo1A c.10.2.3,d.58.7.2 30869,39213 1lr0A 129 6.84e+01 d.212.1.1 74213 1w2fA 276 6.85e+01 d.143.1.3 109125 1t0qA 498 6.89e+01 a.25.1.2 106220 1p68A 102 6.89e+01 k.8.1.1 94158 1fm4A 159 6.89e+01 1bv1 d.129.3.1 76186 1c4xA 285 7.03e+01 1c4xA c.69.1.10 34684 1lliA 92 7.03e+01 1lmb3 a.35.1.2 17025 1ji8A 111 7.04e+01 d.203.1.1 66733 1bv1 159 7.36e+01 1bv1 d.129.3.1 41313 2ygsA 92 7.41e+01 1cy5A a.77.1.3 18431 2f46A 156 7.45e+01 1vknA 351 7.49e+01 c.2.1.3,d.81.1.1 108676,108677 1nnvA 110 7.65e+01 d.17.7.1 92012 1ox3A 109 7.70e+01 h.1.17.1 93668 2aaoA 166 7.79e+01 2fa1A 160 7.85e+01 1f1uA 323 7.86e+01 d.32.1.3,d.32.1.3 83200,83201 1dcqA 278 7.90e+01 1dcqA d.211.1.1,g.45.1.1 19178,45326 1xewX 182 7.90e+01 1a05A 358 8.05e+01 1cnzA c.77.1.1 35059 1aj4 161 8.08e+01 1ncx a.39.1.5 17244 1f1xA 322 8.09e+01 d.32.1.3,d.32.1.3 83208,83209 1hfoA 113 8.09e+01 d.80.1.3 61006 1zbdB 134 8.10e+01 1zbdB g.50.1.1 45359 2g0wA 296 8.12e+01 1z2mA 155 8.31e+01 1lnsA 763 8.38e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2cwoA 197 8.42e+01 1jfrA 262 8.44e+01 1jfrA c.69.1.16 34724 1sheA 103 8.52e+01 d.274.1.1 105551 1zj8A 566 8.56e+01 1jbeA 128 8.68e+01 3chy c.23.1.1 62845 1cojA 212 8.72e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1smxA 96 8.79e+01 b.40.4.5 105772 1zghA 260 8.84e+01 1xg9A 260 8.84e+01 1wxrA 1048 8.88e+01 1tvxB 75 8.95e+01 1tvxA d.9.1.1 37442 1tvxA 75 8.97e+01 1tvxA d.9.1.1 37441