# List of top-scoring protein chains for T0291.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jpaA 312 2.28e-41 d.144.1.7 67011 1zmuA 327 5.56e-41 1a06 332 1.10e-40 1tkiA d.144.1.7 41634 1zmvA 327 1.24e-40 1y8gA 327 1.59e-40 1mqbA 333 1.67e-40 d.144.1.7 91392 2fh9A 274 4.62e-40 1opjA 293 7.15e-40 d.144.1.7 87230 1fotA 318 1.07e-39 1cdkA d.144.1.7 59938 2f4jA 287 1.18e-39 2eueA 275 1.30e-39 1muoA 297 1.80e-39 d.144.1.7 85110 1opkA 495 2.13e-39 b.34.2.1,d.93.1.1,d.144.1.7 87232,87233,87234 2fo0A 495 2.32e-39 1oplA 537 2.35e-39 b.34.2.1,d.93.1.1,d.144.1.7 87235,87236,87237 1ol5A 282 2.78e-39 d.144.1.7 93310 1mq4A 272 3.23e-39 d.144.1.7 91391 2bmcA 306 3.42e-39 2c6eA 283 3.45e-39 1xjdA 345 3.50e-39 1mryA 339 4.32e-39 d.144.1.7 91451 1fgkA 310 4.38e-39 1fgkA d.144.1.7 41693 2c6dA 275 4.49e-39 1gzkA 315 5.02e-39 d.144.1.7 83406 1o6lA 337 5.11e-39 d.144.1.7 81092 1gznA 335 5.21e-39 d.144.1.7 83407 1o6kA 336 5.26e-39 d.144.1.7 81091 1y57A 452 5.73e-39 1fmk 452 5.86e-39 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24511,40436,41690 2ptk 453 8.51e-39 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24517,40457,41692 1ol6A 282 8.58e-39 d.144.1.7 93311 1oecA 316 1.05e-38 1mp8A 281 1.10e-38 d.144.1.7 91384 1kswA 452 1.15e-38 b.34.2.1,d.93.1.1,d.144.1.7 68860,68861,68862 1yolA 283 1.19e-38 1vywA 309 1.22e-38 d.144.1.7 108922 2bdwA 362 1.33e-38 1qpcA 279 1.37e-38 1fgkA d.144.1.7 41685 1yojA 283 1.51e-38 1t45A 331 1.56e-38 d.144.1.7 106396 1pkgA 329 1.80e-38 d.144.1.7 94830 1t46A 313 1.82e-38 d.144.1.7 106397 3lck 271 1.84e-38 1fmk d.144.1.7 41686 1qcfA 454 2.01e-38 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24498,40490,41680 1yi6A 276 2.08e-38 1h1rA 303 2.13e-38 d.144.1.7 76489 1oiuA 302 2.32e-38 d.144.1.7 103958 1qmzA 299 2.81e-38 1hcl d.144.1.7 41604 1gz8A 299 2.83e-38 d.144.1.7 83405 1w98A 298 2.87e-38 1pkdA 297 3.01e-38 d.144.1.7 88141 1jvpP 298 3.29e-38 d.144.1.7 67371 1yhwA 297 3.61e-38 1giiA 298 4.39e-38 d.144.1.7 65218 1oitA 299 4.64e-38 d.144.1.7 93075 1yhvA 297 5.18e-38 1fvrA 327 5.41e-38 d.144.1.7 60047 1xh9A 350 5.89e-38 1k9aA 450 7.27e-38 b.34.2.1,d.93.1.1,d.144.1.7 72188,72189,72190 1q61A 350 7.93e-38 d.144.1.7 95955 1rjbA 344 8.78e-38 d.144.1.7 97557 1qpdA 279 8.95e-38 1fmk d.144.1.7 41687 1vzoA 355 8.96e-38 d.144.1.7 108971 1irk 306 9.11e-38 1fmk d.144.1.7 41703 1bygA 278 9.35e-38 1fmk d.144.1.7 41705 2bfxA 284 1.04e-37 1lufA 343 1.16e-37 d.144.1.7 78223 1ir3A 306 1.24e-37 1fmk d.144.1.7 41702 2bfyA 284 1.24e-37 2b4sB 306 1.26e-37 1cdkA 350 1.41e-37 1cdkA d.144.1.7 41620 1cmkE 351 1.42e-37 1cdkA d.144.1.7 41623 1ctpE 350 1.54e-37 1cdkA d.144.1.7 41622 1smhA 350 1.55e-37 d.144.1.7 105757 1i44A 306 1.60e-37 1fmk d.144.1.7 61664 1u46A 291 1.67e-37 d.144.1.7 107656 1q62A 350 2.10e-37 d.144.1.7 95956 1p14A 306 2.24e-37 d.144.1.7 87660 1u54A 291 2.38e-37 d.144.1.7 107675 1xh8A 350 3.04e-37 2c1aA 351 3.05e-37 1m7nA 322 3.09e-37 d.144.1.7 78738 2f57A 317 3.39e-37 1p4oA 322 3.52e-37 d.144.1.7 87775 1ql6A 298 3.62e-37 1cdkA d.144.1.7 41636 1ad5A 438 3.65e-37 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24505,40491,41681 1zrzA 364 3.89e-37 1jqhA 308 4.25e-37 d.144.1.7 71793 2evaA 307 4.44e-37 1sm2A 264 4.46e-37 d.144.1.7 105754 1phk 298 4.67e-37 1cdkA d.144.1.7 41635 1ydrE 350 5.20e-37 1cdkA d.144.1.7 41624 1jbpE 350 5.27e-37 1cdkA d.144.1.7 62849 1y6bA 366 5.92e-37 1l3rE 350 6.08e-37 d.144.1.7 73552 2erzE 351 6.09e-37 1vr2A 316 6.80e-37 1fgkA d.144.1.7 41701 1ywnA 316 6.99e-37 2cdzA 303 8.18e-37 2bvaA 292 8.58e-37 2g15A 318 9.36e-37 1u7eA 350 1.09e-36 1r0pA 312 1.13e-36 d.144.1.7 96734 1apmE 350 1.14e-36 1cdkA d.144.1.7 41628 2etrA 415 1.14e-36 2phkA 277 1.16e-36 1cdkA d.144.1.7 41637 1u5rA 348 1.24e-36 1k3aA 299 1.31e-36 d.144.1.7 68098 1sykA 350 1.32e-36 1ua2A 346 1.44e-36 1v0oA 288 1.45e-36 d.144.1.7 100243 1v0bA 288 1.52e-36 d.144.1.7 100241 1k2pA 263 1.72e-36 d.144.1.7 72012 1ob3A 288 1.75e-36 d.144.1.7 92747 1uu3A 310 1.88e-36 d.144.1.7 99999 1s9jA 341 1.89e-36 2biyA 310 2.52e-36 1h1wA 289 3.09e-36 d.144.1.7 83460 1jksA 294 3.38e-36 d.144.1.7 71710 1p4fA 293 3.48e-36 d.144.1.7 104063 1uu9A 286 3.50e-36 d.144.1.7 100002 2c30A 321 3.63e-36 1blxA 326 3.81e-36 1hcl d.144.1.7 41596 1z5mA 286 3.89e-36 1s9iA 354 4.48e-36 2acxA 576 4.72e-36 1xo2B 308 5.40e-36 1rdqE 350 5.65e-36 d.144.1.7 97314 1wvwA 278 6.30e-36 1unlA 292 8.33e-36 1h4lA 292 8.68e-36 d.144.1.7 70871 2f2uA 402 9.69e-36 2b7aA 293 1.13e-35 1u59A 287 1.36e-35 d.144.1.7 107681 1tvoA 368 1.51e-35 1wzyA 368 1.55e-35 3erk 364 1.73e-35 1hcl d.144.1.7 41654 1xkkA 352 1.89e-35 2br1A 297 1.94e-35 1ia8A 289 2.07e-35 1ia8A d.144.1.7 62112 2erk 365 2.09e-35 1hcl d.144.1.7 41655 1m14A 333 2.10e-35 d.144.1.7 78367 1pme 380 2.19e-35 1hcl d.144.1.7 41653 1koa 491 2.38e-35 1tkiA b.1.1.4,d.144.1.7 21712,41642 1pmnA 364 2.65e-35 d.144.1.7 94907 1jnk 423 2.73e-35 1hcl d.144.1.7 41659 1yvjA 290 2.83e-35 1wmkA 321 3.12e-35 1gol 364 3.89e-35 1hcl d.144.1.7 41658 1cm8A 367 4.32e-35 1hcl d.144.1.7 41651 1uwjA 276 4.80e-35 d.144.1.7 100125 1uwhA 276 5.54e-35 d.144.1.7 100123 1ukhA 369 6.83e-35 d.144.1.7 107913 1xbbA 291 9.75e-35 1kobA 387 1.02e-34 1tkiA d.144.1.7 41640 1mruA 311 1.16e-34 d.144.1.7 79425 1o6yA 299 1.59e-34 d.144.1.7 81106 2baqA 365 2.21e-34 2g01A 370 2.31e-34 1p38 379 3.71e-34 1hcl d.144.1.7 41650 1ian 366 3.84e-34 1hcl d.144.1.7 41645 1a9u 379 3.85e-34 1hcl d.144.1.7 41646 2balA 365 3.85e-34 1oz1A 372 3.91e-34 d.144.1.7 93780 2gfsA 372 3.91e-34 1lewA 360 3.93e-34 d.144.1.7 73875 1yqjA 366 3.95e-34 1wbsA 360 4.09e-34 1zzlA 351 4.33e-34 2b9fA 353 4.55e-34 1yw2A 360 5.60e-34 1ywrA 360 5.80e-34 1r3cA 366 5.88e-34 d.144.1.7 96906 2ghlA 348 6.08e-34 2b9hA 353 6.11e-34 1zy4A 303 6.82e-34 1zydA 303 1.83e-33 2ac5A 316 2.09e-33 1omwA 689 2.39e-33 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1zxeA 303 4.43e-33 2ac3A 316 9.65e-33 1nxkA 400 1.10e-32 d.144.1.7 92302 1r0eA 391 2.27e-32 1q5kA 414 2.28e-32 d.144.1.7 104537 1j1bA 420 2.29e-32 d.144.1.7 90758 1pyxA 422 2.29e-32 d.144.1.7 95383 1q41A 424 2.29e-32 d.144.1.7 95774 1gngA 378 2.70e-32 d.144.1.7 76239 1uv5A 350 2.95e-32 d.144.1.7 100029 1h8fB 350 3.04e-32 d.144.1.7 65734 1h8fA 352 3.04e-32 d.144.1.7 65733 2a19B 284 3.62e-32 1t4hA 290 3.66e-32 d.144.1.7 106420 1o9uA 350 3.68e-32 d.144.1.7 92691 1yxsA 293 1.01e-31 2bikB 313 1.29e-31 1xwsA 313 1.30e-31 1xqzA 300 1.33e-31 1yxtA 293 2.32e-31 1yhsA 273 3.77e-31 1tkiA 321 7.08e-30 1tkiA d.144.1.7 41638 1z57A 339 1.13e-29 1ymiA 334 1.19e-29 2bujA 317 2.34e-29 1jwhA 337 4.21e-29 d.144.1.7 71913 1pjkA 334 4.36e-29 d.144.1.7 88122 1na7A 329 9.28e-29 d.144.1.7 91752 1om1A 332 1.39e-28 d.144.1.7 93347 1m2rA 327 1.49e-28 d.144.1.7 84760 1m2pA 325 1.60e-28 d.144.1.7 84758 1x8bA 289 4.04e-27 1q8yA 373 4.85e-27 d.144.1.7 96234 1howA 373 4.86e-27 1hcl d.144.1.7 41679 1b6cB 342 8.62e-27 1b6cB d.144.1.7 41673 1py5A 326 9.55e-27 d.144.1.7 104389 2eu9A 355 1.54e-26 2exeA 357 1.68e-26 1vjyA 303 1.69e-26 d.144.1.7 108633 1rw8A 301 1.87e-26 1ckiA 317 3.25e-25 1csn d.144.1.7 41660 1wbpA 397 7.16e-25 2chlA 351 2.45e-24 2c47A 313 6.66e-24 2csn 297 5.73e-22 1csn d.144.1.7 41665 1csn 298 5.78e-22 1csn d.144.1.7 41664 1zarA 282 1.19e-05 1zthA 258 2.04e-02 2bkkA 264 1.89e+00 1u7tA 261 2.04e+00 1j7lA 264 2.11e+00 d.144.1.6 62697 1l8tA 263 2.20e+00 d.144.1.6 73702 1so8A 261 2.27e+00 c.2.1.2 98940 2ahbA 356 2.76e+00 1mb8A 243 3.08e+00 a.40.1.1,a.40.1.1 84925,84926 1sh5A 245 3.71e+00 a.40.1.1,a.40.1.1 105543,105544 1u6eA 335 3.84e+00 1hzpA 335 3.89e+00 1hn9A c.95.1.2,c.95.1.2 61455,61456 2aj9A 356 3.94e+00 1e6mA 128 3.96e+00 3chy c.23.1.1 31039 1m1mA 355 3.99e+00 c.95.1.2,c.95.1.2 74409,74410 1gsoA 431 6.42e+00 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1zosA 230 8.10e+00 2etvA 346 8.90e+00 1dcqA 278 9.90e+00 1dcqA d.211.1.1,g.45.1.1 19178,45326 1c4wA 128 1.10e+01 3chy c.23.1.1 31046 1zdmA 129 1.13e+01 1kb9C 385 1.19e+01 f.32.1.1,f.21.1.2 77315,77316 1xiqA 157 1.51e+01 1dtp 190 1.67e+01 1ddt d.166.1.1 42248 1ziwA 680 1.77e+01 1j5cA 98 1.79e+01 b.6.1.1 71541 1a28A 256 1.79e+01 1a28A a.123.1.1 19290 2a0zA 705 1.80e+01 1m9wA 98 1.80e+01 b.6.1.1 74604 1e3kA 258 1.83e+01 1a28A a.123.1.1 59193 1mf8B 170 1.84e+01 a.39.1.5 79041 1sr7A 259 1.84e+01 a.123.1.1 105957 1auiB 169 1.84e+01 1auiB a.39.1.5 17325 2atvA 196 1.89e+01 1sqnA 261 1.89e+01 a.123.1.1 105944 1wstA 417 2.02e+01 1vheA 373 2.18e+01 b.49.3.1,c.56.5.4 100669,100670 2apjA 260 2.20e+01 1nd4A 264 2.28e+01 d.144.1.6 91815 1f0lA 535 2.29e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1ymv 129 2.29e+01 3chy c.23.1.1 31045 1ymuA 130 2.40e+01 3chy c.23.1.1 31066 1pcs 98 2.49e+01 1plc b.6.1.1 22871 1e6lA 127 2.71e+01 3chy c.23.1.1 59307 1ab6A 125 2.71e+01 3chy c.23.1.1 31054 1mihA 129 2.73e+01 c.23.1.1 84975 1vlzA 128 2.74e+01 3chy c.23.1.1 31048 2fnaA 357 2.77e+01 1hey 128 2.84e+01 3chy c.23.1.1 31061 1ehc 128 2.88e+01 3chy c.23.1.1 31053 2bkaA 242 2.92e+01 6chyA 128 2.97e+01 3chy c.23.1.1 31062 1ab5A 125 3.00e+01 3chy c.23.1.1 31056 1pxuA 131 3.01e+01 b.40.3.2 104383 1jb3A 131 3.06e+01 1jc7A b.40.3.2 62833 1jbeA 128 3.07e+01 3chy c.23.1.1 62845 1u8tA 128 3.09e+01 1jc7A 131 3.11e+01 1jc7A b.40.3.2 62873 1cye 129 3.12e+01 3chy c.23.1.1 31077 1kmiY 129 3.14e+01 c.23.1.1 72751 1nw1A 429 3.17e+01 d.144.1.8 86286 5chy 128 3.30e+01 3chy c.23.1.1 31050 1e6kA 130 3.34e+01 3chy c.23.1.1 59306 1udrA 129 3.39e+01 3chy c.23.1.1 31041 1d4zA 128 3.51e+01 3chy c.23.1.1 31047 1xxxA 303 3.60e+01 1qvzA 237 4.14e+01 c.23.16.2 96453 2ashA 381 4.16e+01 1z1eA 390 4.29e+01 2chy 128 4.30e+01 3chy c.23.1.1 31081 1qvvA 237 4.42e+01 c.23.16.2 96442 1rw7A 243 4.43e+01 c.23.16.2 97963 2chf 128 4.45e+01 3chy c.23.1.1 31079 1rzmA 338 4.46e+01 c.1.10.4 105137 1vr6A 350 4.64e+01 1g0hA 252 4.68e+01 1dk4A e.7.1.1 60171 1i94Q 104 4.82e+01 1fjfQ b.40.4.5 62008 2a62A 322 5.09e+01 1b48A 221 5.33e+01 1pgtA a.45.1.1,c.47.1.5 17703,32997 1gukA 222 5.34e+01 1pgtA a.45.1.1,c.47.1.5 17705,32999 1be4C 152 5.34e+01 1npk d.58.6.1 39092 1be4A 151 5.39e+01 1npk d.58.6.1 39090 1ef8A 261 5.51e+01 1ef8A c.14.1.3 30921 1iu8A 206 6.40e+01 c.56.4.1 71436 1w44A 331 6.50e+01 1prtB 196 6.66e+01 1bcpB b.40.2.1,d.169.1.2 25116,42425 1ptoH 198 6.74e+01 1bcpB b.40.2.1,d.169.1.2 25126,42435 1bcpB 199 6.78e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1qb0A 211 6.96e+01 1c25 c.46.1.1 32699 2ap9A 299 6.98e+01 1x6iA 91 7.15e+01 2d4eA 515 7.36e+01 2be4A 272 7.45e+01 1f3aA 222 7.54e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1evyA 366 7.74e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 2ckgA 225 7.88e+01 1fb7A 99 7.88e+01 1hvc b.50.1.1 26683 1pg5B 168 8.00e+01 d.58.2.1,g.41.7.1 104148,104149 1um0A 365 8.23e+01 d.258.1.1 107942 1e17A 150 8.36e+01 2hfh a.4.5.14 16143 1to6A 371 8.52e+01 c.141.1.1 107170 1o9hA 250 8.68e+01 c.66.1.29 86693 1rv6V 101 8.99e+01 g.17.1.1 97912