# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fgkA 310 1.18e-31 1fgkA d.144.1.7 41693 1gz8A 299 2.56e-31 d.144.1.7 83405 1p4oA 322 6.80e-31 d.144.1.7 87775 2evaA 307 8.65e-31 1rdqE 350 3.14e-30 d.144.1.7 97314 1ia8A 289 7.24e-30 1ia8A d.144.1.7 62112 1t4hA 290 1.11e-27 d.144.1.7 106420 1j1bA 420 3.48e-27 d.144.1.7 90758 2bikB 313 4.04e-27 1z57A 339 3.83e-25 1csn 298 1.06e-21 1csn d.144.1.7 41664 1e8yA 966 2.32e-01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1e7uA 961 5.88e-01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1dtdA 303 5.97e-01 1aye c.56.5.1 33823 1jb3A 131 1.68e+00 1jc7A b.40.3.2 62833 1whzA 70 1.75e+00 2gq1A 332 1.81e+00 1auiB 169 1.87e+00 1auiB a.39.1.5 17325 1x6iA 91 2.33e+00 1uuzA 137 2.38e+00 d.233.1.1 100024 1d2mA 665 3.27e+00 1d2mA c.37.1.19,c.37.1.19 32417,32418 1w2fA 276 3.47e+00 d.143.1.3 109125 1b5l 172 3.70e+00 1b5l a.26.1.3 16900 1na3A 91 4.10e+00 k.38.1.1 85481 1bcpB 199 4.12e+00 1bcpB b.40.2.1,d.169.1.2 25120,42429 1t6t1 118 4.56e+00 1j6oA 268 4.61e+00 c.1.9.12 77088 1g8iA 190 5.18e+00 1rec a.39.1.5 60363 1sfxA 109 5.96e+00 a.4.5.50 105505 1k94A 165 6.23e+00 a.39.1.8 68333 1gsoA 431 6.70e+00 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1sg6A 393 8.23e+00 e.22.1.1 105522 1fepA 724 9.81e+00 1fepA f.4.3.3 43808 1twdA 256 1.05e+01 c.1.30.1 107397 1jbeA 128 1.07e+01 3chy c.23.1.1 62845 1c4oA 664 1.14e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1d7oA 297 1.33e+01 1enp c.2.1.2 29907 1rwiA 270 1.35e+01 b.68.9.1 97987 1g8sA 230 1.43e+01 c.66.1.3 90507 1aj8A 371 1.43e+01 1aj8A a.103.1.1 18900 1czaN 917 1.48e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1wp5A 323 1.51e+01 1kw4A 89 1.52e+01 a.60.1.2 73077 1c75A 71 1.56e+01 451c a.3.1.1 15796 1te2A 226 1.58e+01 c.108.1.6 106792 1n40A 396 1.58e+01 a.104.1.1 79977 2gfaA 119 1.68e+01 1i7hA 111 1.70e+01 d.15.4.1 71122 1v2bA 177 1.71e+01 d.107.1.2 108279 1o9gA 250 1.72e+01 c.66.1.29 86692 1p3dA 475 1.74e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2bkaA 242 1.78e+01 2gnxA 365 1.80e+01 1erjA 393 1.81e+01 1erjA b.69.4.1 27660 1dpe 507 1.82e+01 1dpe c.94.1.1 35799 1go4A 205 1.82e+01 d.135.1.1 70292 1iy8A 267 1.87e+01 c.2.1.2 83774 1a64A 97 1.96e+01 1cdcA b.1.1.1 19750 1m4lA 307 1.96e+01 c.56.5.1 78604 1b35B 255 2.05e+01 1b35B b.121.4.1 23334 1j24A 143 2.06e+01 c.52.1.20 84008 1iu8A 206 2.10e+01 c.56.4.1 71436 1yn9A 169 2.16e+01 1ej6D 418 2.24e+01 i.7.1.1 45970 1dqeA 137 2.42e+01 1dqeA a.39.2.1 17388 1usgA 346 2.45e+01 c.93.1.1 99864 3nul 130 2.46e+01 3nul d.110.1.1 40891 1ho8A 480 2.46e+01 1ho8A a.118.1.9 61107 1i27A 73 2.60e+01 1i27A a.4.5.30 61555 1ef1C 90 2.65e+01 1ef1C a.137.5.1 19642 1djxA 624 2.74e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1jfzA 154 2.80e+01 a.149.1.1 66655 1f60B 94 2.93e+01 1b64 d.58.12.1 39307 1sgwA 214 2.99e+01 c.37.1.12 105541 3bamA 213 3.06e+01 1bam c.52.1.3 33288 1g0oA 283 3.07e+01 1ybvA c.2.1.2 60181 1uuqA 440 3.12e+01 c.1.8.3 100015 1dciA 275 3.13e+01 1dciA c.14.1.3 30918 1fs5A 266 3.15e+01 c.124.1.1 65044 1m45A 148 3.17e+01 a.39.1.5 78598 1jmcA 246 3.17e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1cojA 212 3.26e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1t6cA 315 3.34e+01 c.55.1.8,c.55.1.8 106558,106559 1qnrA 344 3.34e+01 1qnoA c.1.8.3 28834 1qksA 567 3.37e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1l7aA 318 3.46e+01 c.69.1.25 77772 1a8y 367 3.49e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1gw5S 142 3.56e+01 d.110.4.2 70633 1ufoA 238 3.59e+01 c.69.1.27 99344 1gz2A 142 3.63e+01 d.169.1.1 83392 1f0lA 535 3.64e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1pot 325 3.67e+01 1pot c.94.1.1 35807 1j7gA 144 3.68e+01 c.110.1.1 84130 1tvxA 75 3.71e+01 1tvxA d.9.1.1 37441 1uzvA 114 3.72e+01 1q7eA 428 3.75e+01 c.123.1.1 96035 1sauA 115 3.77e+01 1lzlA 323 3.84e+01 c.69.1.2 78306 1ufyA 122 3.84e+01 d.79.1.2 88489 1jdc 429 3.87e+01 1jdc b.71.1.1,c.1.8.1 27789,28776 1ir21 140 3.91e+01 1t8kA 77 3.96e+01 a.28.1.1 106666 1gveA 327 3.98e+01 c.1.7.1 70597 1feuA 206 4.02e+01 1feuA b.53.1.1 59801 2gk9A 426 4.02e+01 1uekA 275 4.05e+01 d.14.1.5,d.58.26.5 88483,88484 1w0hA 204 4.30e+01 1mzbA 136 4.33e+01 a.4.5.42 91497 1n97A 389 4.35e+01 a.104.1.1 80335 1k6iA 352 4.45e+01 c.2.1.2 68223 1ia9A 280 4.46e+01 1ia9A d.144.1.5 62113 1h99A 224 4.49e+01 a.142.1.1,a.142.1.1 60814,60815 1syyA 346 4.49e+01 a.25.1.2 106126 1iw0A 215 4.59e+01 a.132.1.1 83720 1nogA 177 4.59e+01 a.25.2.2 85923 1cjaA 342 4.61e+01 1cjaA d.144.1.3 41708 1g291 372 4.62e+01 1g291 1gmjA 84 4.63e+01 h.4.8.1 65310 1gk8I 140 4.64e+01 d.73.1.1 65242 1fxxA 482 4.66e+01 1fxxA c.55.3.5 33726 1jjtA 228 4.70e+01 1a7tA d.157.1.1 63139 1g8aA 227 4.70e+01 c.66.1.3 90506 1dkuA 317 4.71e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1hm9A 468 4.75e+01 b.81.1.4,c.68.1.5 65866,65867 1oygA 447 4.87e+01 b.67.2.2 93726 1bf6A 291 4.95e+01 1pscA c.1.9.3 29065 1aa7A 158 4.98e+01 1aa7A a.95.1.1 18741 1gvzA 237 4.99e+01 b.47.1.2 76360 1di2A 69 5.04e+01 1di2A d.50.1.1 38780 1jfrA 262 5.11e+01 1jfrA c.69.1.16 34724 1izmA 184 5.14e+01 a.199.1.1 90725 1im3D 95 5.32e+01 1im3D b.1.18.5 62568 1bli 483 5.38e+01 1bli b.71.1.1,c.1.8.1 27715,28702 1ew6A 137 5.39e+01 1ewaA a.1.1.2 15637 1w2wA 211 5.48e+01 c.124.1.5 109130 1vioA 243 5.52e+01 d.265.1.3,d.66.1.5 100762,100763 1ji7A 89 5.58e+01 a.60.1.1 71682 1o5kA 306 5.61e+01 c.1.10.1 92504 1dpgA 485 5.88e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1ff9A 450 5.92e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1f3vA 179 5.95e+01 1f3vA d.58.22.1 39382 1fqiA 147 5.99e+01 1agrE a.91.1.1 18542 1oflA 481 6.01e+01 b.80.1.4 103934 1g2bA 62 6.08e+01 1tud b.34.2.1 24488 1b79A 119 6.08e+01 1b79A a.81.1.1 18451 1esc 306 6.16e+01 1esc c.23.10.1 31334 1ad2 228 6.17e+01 1ad2 e.24.1.1 43353 1msk 331 6.23e+01 1msk d.173.1.1 42495 1hx6A 394 6.24e+01 1cjdA b.121.2.1,b.121.2.1 58995,58996 1nszA 347 6.26e+01 b.30.5.4 80724 1r89A 437 6.27e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2dfkA 402 6.40e+01 1luzA 88 6.44e+01 b.40.4.5 74271 1dbqA 289 6.54e+01 1qpzA c.93.1.1 35666 1dbfA 127 6.74e+01 2chsA d.79.1.2 39761 1s95A 333 6.82e+01 d.159.1.3 105375 1fexA 59 6.91e+01 a.4.1.3 59803 1eu8A 409 7.04e+01 1eu8A c.94.1.1 59502 1xgkA 352 7.19e+01 1nykA 165 7.33e+01 b.33.1.1 86408 2gkpA 167 7.36e+01 1yc5A 246 7.36e+01 1di1A 300 7.41e+01 1di1A a.128.1.4 19446 1f2tA 149 7.42e+01 1f2tA c.37.1.12 32373 1iwmA 186 7.51e+01 b.125.1.2 83758 1vlyA 338 7.63e+01 b.44.2.1,d.250.1.1 108871,108872 1dzkA 157 7.77e+01 1obpA b.60.1.1 27096 1kid 203 7.77e+01 1derA c.8.5.1 30771 1g4yB 101 7.77e+01 1g4yB f.15.1.1 60251 1c3pA 375 7.87e+01 1c3pA c.42.1.2 32606 1cliA 345 7.88e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1aj2 282 7.92e+01 1aj2 c.1.21.1 29665 1gxqA 106 7.99e+01 a.4.6.1 70721 1xkpA 246 8.02e+01 1vkpA 383 8.02e+01 d.126.1.6 108686 1ypyA 184 8.04e+01 1e8gA 560 8.10e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1qusA 322 8.21e+01 1ltm d.2.1.6 36991 1ymtA 246 8.23e+01 1wnaA 131 8.26e+01 1e4mM 501 8.27e+01 1e70M c.1.8.4 59226 1h8bA 75 8.35e+01 a.39.1.7 60736 1iapA 211 8.45e+01 a.91.1.1 62119 1hbnA 549 8.46e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 1v2zA 111 8.49e+01 a.186.1.1 108300 1ex2A 189 8.55e+01 1ex2A c.51.4.2 33225 1gqiA 708 8.61e+01 c.1.8.10,d.92.2.2 76279,76280 1psrA 100 8.66e+01 1psrA a.39.1.2 17180 1uasA 362 8.66e+01 b.71.1.1,c.1.8.1 88388,88389 1f00I 282 8.72e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1gq8A 319 8.75e+01 b.80.1.5 70350 1ggzA 148 8.77e+01 a.39.1.5 70176 1e43A 483 8.82e+01 1bli b.71.1.1,c.1.8.1 59217,59218 1vpjA 192 8.83e+01 1wddS 128 8.88e+01 1gcyA 527 8.90e+01 1jdc b.71.1.1,c.1.8.1 27788,28775 1pmi 440 8.94e+01 1pmi b.82.1.3 28114 1g6gA 127 8.95e+01 1g6gA b.26.1.2 23916