# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gz8A 299 1.04e-34 d.144.1.7 83405 1p4oA 322 2.74e-34 d.144.1.7 87775 1fgkA 310 7.41e-34 1fgkA d.144.1.7 41693 2evaA 307 1.58e-33 1rdqE 350 9.88e-33 d.144.1.7 97314 1ia8A 289 1.01e-31 1ia8A d.144.1.7 62112 1t4hA 290 4.47e-30 d.144.1.7 106420 1j1bA 420 6.29e-30 d.144.1.7 90758 2bikB 313 5.90e-29 1z57A 339 1.72e-28 1csn 298 5.23e-23 1csn d.144.1.7 41664 1e7uA 961 1.30e-02 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1e8yA 966 3.15e-02 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1cjaA 342 3.00e-01 1cjaA d.144.1.3 41708 1gnlA 544 8.79e-01 e.26.1.1 70287 1b8aA 438 1.08e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 1dtdA 303 2.45e+00 1aye c.56.5.1 33823 1e8aA 91 2.82e+00 1b4cA a.39.1.2 17188 1i2sA 282 3.05e+00 e.3.1.1 71104 1dv1A 449 3.12e+00 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1gw5S 142 3.57e+00 d.110.4.2 70633 1v2bA 177 4.10e+00 d.107.1.2 108279 1hzoA 271 4.57e+00 e.3.1.1 71092 1whzA 70 5.29e+00 1n4wA 504 5.51e+00 c.3.1.2,d.16.1.1 91676,91677 1g8iA 190 5.85e+00 1rec a.39.1.5 60363 1gntA 553 5.92e+00 e.26.1.1 70290 1je0A 236 6.78e+00 c.56.2.1 66581 1sfxA 109 7.76e+00 a.4.5.50 105505 1m40A 263 7.90e+00 e.3.1.1 74437 1e4fT 419 7.96e+00 1e4fT c.55.1.1,c.55.1.1 33453,33454 1w1oA 534 8.04e+00 d.58.32.4,d.145.1.1 109071,109072 1ako 268 9.31e+00 1ako d.151.1.1 41779 1f3vA 179 9.46e+00 1f3vA d.58.22.1 39382 2gk9A 426 9.67e+00 1w2fA 276 9.79e+00 d.143.1.3 109125 1obdA 306 1.01e+01 d.143.1.1 86767 1k94A 165 1.04e+01 a.39.1.8 68333 1jssA 224 1.05e+01 d.129.3.2 71844 1tvxA 75 1.06e+01 1tvxA d.9.1.1 37441 1jb3A 131 1.06e+01 1jc7A b.40.3.2 62833 1jl2A 156 1.08e+01 c.55.3.1 66822 1vhwA 253 1.09e+01 c.56.2.1 100706 1aj2 282 1.18e+01 1aj2 c.1.21.1 29665 1i9zA 347 1.21e+01 1i9yA d.151.1.2 62102 1x8gA 227 1.21e+01 1cjcA 460 1.23e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1kjwA 295 1.25e+01 b.34.2.1,c.37.1.1 68643,68644 1eu8A 409 1.33e+01 1eu8A c.94.1.1 59502 1f0lA 535 1.35e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1m4lA 307 1.40e+01 c.56.5.1 78604 1usgA 346 1.60e+01 c.93.1.1 99864 1huxA 270 1.67e+01 1huxA c.55.1.5 61278 1bueA 265 1.71e+01 1btl e.3.1.1 42727 1j98A 157 1.71e+01 1j98A d.185.1.2 62755 1btkA 169 1.73e+01 1btkA b.55.1.1 26959 1f8rA 498 1.73e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1gtfA 74 1.74e+01 b.82.5.1 70460 1qgvA 142 1.77e+01 1qgvA c.47.1.8 33056 1bupA 386 1.79e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1oc7A 364 1.87e+01 c.6.1.1 86794 1epxA 370 1.91e+01 1fbaA c.1.10.1 29150 1wddS 128 1.92e+01 1c93A 265 1.96e+01 2ebn c.1.8.5 28998 1byfA 125 2.03e+01 1byfA d.169.1.1 42419 1rl0A 255 2.03e+01 1inlA 296 2.04e+01 c.66.1.17 66220 1kolA 398 2.06e+01 b.35.1.2,c.2.1.1 77474,77475 1uzvA 114 2.10e+01 1dcoA 104 2.11e+01 1dcpA d.74.1.1 39680 1eyeA 280 2.13e+01 1aj2 c.1.21.1 29672 1bsg 266 2.16e+01 1btl e.3.1.1 42729 1edt 271 2.24e+01 2ebn c.1.8.5 28993 1bjt 793 2.32e+01 1bjt e.11.1.1 43249 1ia9A 280 2.37e+01 1ia9A d.144.1.5 62113 1tqhA 247 2.39e+01 c.69.1.29 107225 1ii7A 333 2.43e+01 1ii7A d.159.1.4 62415 1jfrA 262 2.43e+01 1jfrA c.69.1.16 34724 1gveA 327 2.43e+01 c.1.7.1 70597 1v8yA 170 2.57e+01 1ggzA 148 2.63e+01 a.39.1.5 70176 1uebA 184 2.78e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1wp5A 323 2.80e+01 1oboA 169 2.84e+01 c.23.5.1 86776 1j93A 353 2.86e+01 c.1.22.1 66454 1z8kA 193 2.88e+01 1j55A 95 2.95e+01 a.39.1.2 77078 1ryaA 160 2.96e+01 d.113.1.5 105122 1kw4A 89 3.05e+01 a.60.1.2 73077 1czaN 917 3.05e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1j6qA 136 3.13e+01 b.40.9.1 77091 1vpt 348 3.14e+01 3mag c.66.1.25 34207 1sg6A 393 3.20e+01 e.22.1.1 105522 1hzdA 272 3.22e+01 c.14.1.3 65969 1gegA 256 3.23e+01 1ybvA c.2.1.2 29888 1cliA 345 3.40e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1b8oA 284 3.51e+01 1b8oA c.56.2.1 33762 1t6cA 315 3.51e+01 c.55.1.8,c.55.1.8 106558,106559 1rm6A 769 3.57e+01 1c75A 71 3.65e+01 451c a.3.1.1 15796 1qksA 567 3.66e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1ea7A 310 3.73e+01 c.41.1.1 70086 1ej6D 418 3.89e+01 i.7.1.1 45970 1kr4A 125 3.90e+01 d.58.5.2 72889 1iy8A 267 3.98e+01 c.2.1.2 83774 1q52A 314 4.08e+01 c.14.1.3 95846 1g6aA 271 4.14e+01 1btl e.3.1.1 42704 1h99A 224 4.17e+01 a.142.1.1,a.142.1.1 60814,60815 1in6A 334 4.21e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 2dpmA 284 4.32e+01 2dpmA c.66.1.28 34246 1hztA 190 4.35e+01 1i9aA d.113.1.2 61459 1g0cA 364 4.44e+01 7a3hA c.1.8.3 60165 1g0oA 283 4.46e+01 1ybvA c.2.1.2 60181 1j1iA 296 4.47e+01 c.69.1.10 83977 7a3hA 303 4.54e+01 7a3hA c.1.8.3 28817 1fxkC 133 4.55e+01 1fxkC a.2.5.1 15702 1oywA 523 4.57e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1szhA 161 4.65e+01 a.226.1.1 106157 1hxhA 253 4.65e+01 c.2.1.2 76725 1jl1A 155 4.68e+01 c.55.3.1 66821 1vhnA 318 4.69e+01 c.1.4.1 100693 1cs0A 1073 4.75e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1omrA 201 4.78e+01 a.39.1.5 93349 1gheA 177 4.82e+01 d.108.1.1 76222 1qnrA 344 4.87e+01 1qnoA c.1.8.3 28834 1icpA 376 4.89e+01 1oyc c.1.4.1 62270 1ex2A 189 4.94e+01 1ex2A c.51.4.2 33225 1woqA 267 5.00e+01 c.55.1.10,c.55.1.10 109462,109463 1alvA 173 5.02e+01 1alvA a.39.1.8 17370 1gen 218 5.06e+01 1gen b.66.1.1 27536 1cojA 212 5.10e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1k07A 263 5.22e+01 d.157.1.1 77218 1l7aA 318 5.23e+01 c.69.1.25 77772 1wnaA 131 5.24e+01 1nykA 165 5.28e+01 b.33.1.1 86408 1i27A 73 5.36e+01 1i27A a.4.5.30 61555 1p6oA 161 5.39e+01 c.97.1.2 94185 1t7rA 269 5.42e+01 a.123.1.1 106635 1juhA 350 5.43e+01 b.82.1.5 71884 1w6uA 302 5.43e+01 1b5pA 385 5.46e+01 c.67.1.1 90403 1auiB 169 5.47e+01 1auiB a.39.1.5 17325 1b4pA 217 5.48e+01 a.45.1.1,c.47.1.5 83158,83159 1gz2A 142 5.48e+01 d.169.1.1 83392 1dsxA 87 5.54e+01 1t1dA d.42.1.2 38644 1kid 203 5.64e+01 1derA c.8.5.1 30771 1w3iA 293 5.67e+01 c.1.10.1 109152 1vjpA 394 5.75e+01 c.2.1.3,d.81.1.3 100828,100829 1vyrA 364 5.80e+01 c.1.4.1 108906 1g0sA 209 5.93e+01 1g0sA d.113.1.1 60187 1ek0A 170 6.10e+01 1ctqA c.37.1.8 32076 2gkpA 167 6.17e+01 1xszA 356 6.20e+01 1e25A 282 6.24e+01 1e25A e.3.1.1 42731 1xfsA 178 6.25e+01 d.129.3.5 109589 1dbqA 289 6.26e+01 1qpzA c.93.1.1 35666 1hd7A 318 6.28e+01 1bix d.151.1.1 41780 1chuA 540 6.36e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1r89A 437 6.38e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1guiA 155 6.42e+01 b.18.1.14 76351 1r2qA 170 6.45e+01 c.37.1.8 96874 1a9xA 1058 6.47e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1jhfA 202 6.53e+01 a.4.5.2,b.87.1.1 63057,63058 1izoA 417 6.57e+01 a.104.1.1 83851 1t1dA 100 6.58e+01 1t1dA d.42.1.2 38637 1ew6A 137 6.61e+01 1ewaA a.1.1.2 15637 1yiiA 320 6.64e+01 1y0yA 353 6.64e+01 1dbiA 280 6.65e+01 1gci c.41.1.1 32543 1pdo 135 6.67e+01 1pdo c.54.1.1 33376 1d0qA 103 6.67e+01 1d0qA g.41.3.2 45208 1cf7B 95 6.83e+01 1cf7B a.4.5.17 16152 1oygA 447 6.86e+01 b.67.2.2 93726 1hm9A 468 6.89e+01 b.81.1.4,c.68.1.5 65866,65867 1ixkA 315 6.91e+01 c.66.1.38 90716 1sauA 115 6.92e+01 1in4A 334 7.01e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1nxuA 333 7.01e+01 c.122.1.1 86389 1g5cA 170 7.03e+01 1g5cA c.53.2.1 60264 1xdzA 240 7.11e+01 1lyvA 306 7.16e+01 c.45.1.2 74348 1yacA 208 7.29e+01 1yacA c.33.1.3 31757 1msk 331 7.30e+01 1msk d.173.1.1 42495 1q7zA 566 7.43e+01 c.1.21.2,c.1.26.1 96090,96091 1gnkA 112 7.44e+01 2pii d.58.5.1 39073 1enfA 212 7.45e+01 3seb b.40.2.2,d.15.6.1 25198,37787 1p0zA 131 7.47e+01 d.110.6.1 93882 1u4gA 301 7.49e+01 d.92.1.2 107670 1hw5A 210 7.56e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1xdnA 277 7.75e+01 3bamA 213 7.82e+01 1bam c.52.1.3 33288 1d5rA 324 7.89e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1mtzA 293 7.94e+01 c.69.1.7 79467 1oflA 481 8.01e+01 b.80.1.4 103934 1qf8A 182 8.22e+01 1qf8A g.41.4.1 45212 1twdA 256 8.34e+01 c.1.30.1 107397 1umgA 362 8.35e+01 d.280.1.1 107956 1h8eA 510 8.40e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1aquA 297 8.46e+01 1aquA c.37.1.5 31942 1vqsA 116 8.61e+01 1eg5A 384 8.71e+01 1ecxA c.67.1.3 34429 1o7qA 289 8.72e+01 c.68.1.9 92626 1bqcA 302 8.76e+01 1bqcA c.1.8.3 28831 1x7dA 350 8.79e+01 1agqA 135 8.98e+01 1agqA g.17.1.2 44789