# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fgkA 310 8.19e-36 1fgkA d.144.1.7 41693 1p4oA 322 1.63e-35 d.144.1.7 87775 1rdqE 350 2.00e-34 d.144.1.7 97314 1gz8A 299 2.12e-34 d.144.1.7 83405 2evaA 307 5.43e-34 1ia8A 289 9.39e-34 1ia8A d.144.1.7 62112 2bikB 313 7.28e-31 1t4hA 290 9.21e-31 d.144.1.7 106420 1j1bA 420 3.97e-30 d.144.1.7 90758 1z57A 339 1.16e-28 1csn 298 7.64e-25 1csn d.144.1.7 41664 1esc 306 2.65e-01 1esc c.23.10.1 31334 1e8yA 966 7.82e-01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1ufoA 238 1.17e+00 c.69.1.27 99344 1r89A 437 1.54e+00 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1w2fA 276 1.79e+00 d.143.1.3 109125 1e7uA 961 1.85e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2gq1A 332 2.08e+00 1e4mM 501 2.63e+00 1e70M c.1.8.4 59226 1go4A 205 5.30e+00 d.135.1.1 70292 3pviA 157 5.68e+00 3pviA c.52.1.6 33300 1gxqA 106 6.39e+00 a.4.6.1 70721 1wer 334 6.61e+00 1wer a.116.1.2 19108 2gnxA 365 6.87e+00 1qnrA 344 8.27e+00 1qnoA c.1.8.3 28834 1fadA 99 8.98e+00 1fadA a.77.1.2 18428 1bn7A 294 9.05e+00 1bn6A c.69.1.8 34677 1n40A 396 9.15e+00 a.104.1.1 79977 1d7oA 297 1.02e+01 1enp c.2.1.2 29907 1uuzA 137 1.03e+01 d.233.1.1 100024 1ogiA 303 1.12e+01 b.43.4.2,c.25.1.1 92914,92915 1yc5A 246 1.12e+01 1vknA 351 1.16e+01 c.2.1.3,d.81.1.1 108676,108677 1v2zA 111 1.18e+01 a.186.1.1 108300 1bcpB 199 1.18e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1w0hA 204 1.23e+01 1g8iA 190 1.25e+01 1rec a.39.1.5 60363 1bb9 115 1.26e+01 1bb9 b.34.2.1 24554 1na3A 91 1.33e+01 k.38.1.1 85481 1j24A 143 1.40e+01 c.52.1.20 84008 1gveA 327 1.58e+01 c.1.7.1 70597 1ew6A 137 1.67e+01 1ewaA a.1.1.2 15637 1auiB 169 1.81e+01 1auiB a.39.1.5 17325 1cjaA 342 1.85e+01 1cjaA d.144.1.3 41708 1dun 134 1.87e+01 1dun b.85.4.1 28371 1g8aA 227 1.91e+01 c.66.1.3 90506 3nul 130 1.91e+01 3nul d.110.1.1 40891 1tvxA 75 1.92e+01 1tvxA d.9.1.1 37441 1jbeA 128 1.94e+01 3chy c.23.1.1 62845 1ii7A 333 1.98e+01 1ii7A d.159.1.4 62415 1ejdA 419 2.01e+01 1uae d.68.2.2 39576 1qw2A 102 2.01e+01 d.249.1.1 96456 1jvr 137 2.07e+01 1jvr a.61.1.2 18132 1jmcA 246 2.08e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1jfrA 262 2.11e+01 1jfrA c.69.1.16 34724 1j6oA 268 2.21e+01 c.1.9.12 77088 1dtdA 303 2.21e+01 1aye c.56.5.1 33823 1ef1C 90 2.27e+01 1ef1C a.137.5.1 19642 1kqrA 179 2.38e+01 b.29.1.14 72886 1f6vA 91 2.41e+01 1f6vA a.49.1.1 17791 1vioA 243 2.44e+01 d.265.1.3,d.66.1.5 100762,100763 1j2zA 270 2.47e+01 b.81.1.1 90805 1f3vA 179 2.48e+01 1f3vA d.58.22.1 39382 1kid 203 2.52e+01 1derA c.8.5.1 30771 1rm6A 769 2.60e+01 1twdA 256 2.70e+01 c.1.30.1 107397 1ia6A 441 2.74e+01 a.102.1.2 76738 1rwiA 270 2.84e+01 b.68.9.1 97987 1uasA 362 3.00e+01 b.71.1.1,c.1.8.1 88388,88389 1m33A 258 3.10e+01 c.69.1.26 78514 1sfxA 109 3.17e+01 a.4.5.50 105505 1c75A 71 3.18e+01 451c a.3.1.1 15796 1iu8A 206 3.39e+01 c.56.4.1 71436 1nlnA 204 3.41e+01 d.3.1.7 91962 1a64A 97 3.43e+01 1cdcA b.1.1.1 19750 1fjgI 128 3.46e+01 1fjfI d.14.1.1 37559 1oafA 261 3.55e+01 a.93.1.1 86734 1vlyA 338 3.84e+01 b.44.2.1,d.250.1.1 108871,108872 1gq8A 319 3.86e+01 b.80.1.5 70350 1a5t 334 3.94e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1r77A 103 3.98e+01 1br9 194 3.99e+01 1br9 b.40.3.1 25235 1mtpA 323 4.14e+01 e.1.1.1 85107 1c3pA 375 4.17e+01 1c3pA c.42.1.2 32606 1ia9A 280 4.36e+01 1ia9A d.144.1.5 62113 1im3D 95 4.42e+01 1im3D b.1.18.5 62568 1fxxA 482 4.53e+01 1fxxA c.55.3.5 33726 1cojA 212 4.57e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1j3aA 142 4.62e+01 c.21.1.1 77070 1iy8A 267 4.69e+01 c.2.1.2 83774 1x6iA 91 4.77e+01 1dz3A 130 4.78e+01 1dz3A c.23.1.1 31105 1vggA 161 4.83e+01 1b8zA 90 4.89e+01 1huuA a.55.1.1 17902 1gz2A 142 4.99e+01 d.169.1.1 83392 1dbiA 280 4.99e+01 1gci c.41.1.1 32543 1fepA 724 5.04e+01 1fepA f.4.3.3 43808 1s1fA 406 5.07e+01 1jhfA 202 5.10e+01 a.4.5.2,b.87.1.1 63057,63058 1fj2A 232 5.14e+01 1auoA c.69.1.14 34720 1msk 331 5.15e+01 1msk d.173.1.1 42495 1gdhA 320 5.15e+01 1gdhA c.2.1.4,c.23.12.1 30095,31355 1uzvA 114 5.21e+01 1f60B 94 5.28e+01 1b64 d.58.12.1 39307 1fs1B 141 5.30e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1iznB 277 5.33e+01 e.43.1.2 83848 1yn9A 169 5.44e+01 1gvzA 237 5.46e+01 b.47.1.2 76360 1xkpA 246 5.54e+01 1hbnA 549 5.56e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 1pyfA 312 5.70e+01 c.1.7.1 95334 1cpcA 162 5.85e+01 1cpcA a.1.1.3 15643 1fm4A 159 6.01e+01 1bv1 d.129.3.1 76186 1eu8A 409 6.02e+01 1eu8A c.94.1.1 59502 1ek9A 428 6.05e+01 1ek9A f.5.1.1 43809 1uuqA 440 6.06e+01 c.1.8.3 100015 1rreA 200 6.21e+01 d.14.1.10 97791 1efdN 266 6.25e+01 1efdN c.92.2.1 35597 1fjgQ 105 6.28e+01 1fjfQ b.40.4.5 25352 1fqiA 147 6.42e+01 1agrE a.91.1.1 18542 1fjhA 257 6.47e+01 1fjhB c.2.1.2 29870 1g8sA 230 6.49e+01 c.66.1.3 90507 1q7zA 566 6.53e+01 c.1.21.2,c.1.26.1 96090,96091 1szhA 161 6.54e+01 a.226.1.1 106157 1pdo 135 6.56e+01 1pdo c.54.1.1 33376 1lzlA 323 6.68e+01 c.69.1.2 78306 1whzA 70 6.74e+01 1p1mA 406 6.75e+01 b.92.1.4,c.1.9.9 87696,87697 1xd3A 230 6.79e+01 1smxA 96 6.80e+01 b.40.4.5 105772 1jb0D 138 6.86e+01 1jb0D d.187.1.1 62823 1jdpA 441 7.02e+01 c.93.1.1 62906 1qksA 567 7.02e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1w3oA 216 7.10e+01 1fkmA 396 7.12e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1gvnB 287 7.27e+01 c.37.1.21 76354 1elrA 131 7.43e+01 1a17 a.118.8.1 19209 1wlgA 299 7.49e+01 1nuyA 337 7.61e+01 e.7.1.1 86213 1a4pA 96 7.63e+01 1b4cA a.39.1.2 17176 1a8y 367 7.72e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1c1lA 136 7.73e+01 1c1lA b.29.1.3 24219 1w2yA 229 7.77e+01 a.204.1.1 109140 1akhA 61 7.83e+01 1akhA a.4.1.1 15980 1m93B 245 7.83e+01 2gk3A 256 7.88e+01 1hqz1 141 7.88e+01 1jfzA 154 7.92e+01 a.149.1.1 66655 1sg6A 393 7.93e+01 e.22.1.1 105522 1dqaA 467 8.14e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1nxuA 333 8.19e+01 c.122.1.1 86389 1kw4A 89 8.53e+01 a.60.1.2 73077 1nkgA 508 8.55e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1luzA 88 8.59e+01 b.40.4.5 74271 1r5lA 262 8.66e+01 a.5.3.1,c.13.1.1 97099,97100 1l7aA 318 8.79e+01 c.69.1.25 77772 1bd3A 243 8.82e+01 1bd3A c.61.1.1 34098 1i39A 225 8.89e+01 1ekeA c.55.3.1 61585 1s5dA 240 8.94e+01 d.166.1.1 98541