# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jpaA 312 1.69e-56 d.144.1.7 67011 1opjA 293 1.87e-54 d.144.1.7 87230 1ir3A 306 1.18e-53 1fmk d.144.1.7 41702 1p4oA 322 2.05e-53 d.144.1.7 87775 1t46A 313 7.92e-53 d.144.1.7 106397 1fgkA 310 9.42e-53 1fgkA d.144.1.7 41693 1qpcA 279 9.51e-52 1fgkA d.144.1.7 41685 1r0pA 312 7.84e-51 d.144.1.7 96734 1mp8A 281 1.17e-49 d.144.1.7 91384 1fvrA 327 1.93e-49 d.144.1.7 60047 1u46A 291 5.21e-49 d.144.1.7 107656 1u59A 287 1.68e-48 d.144.1.7 107681 1ywnA 316 2.03e-48 1xbbA 291 3.05e-48 2b7aA 293 1.75e-46 2evaA 307 9.56e-39 1mq4A 272 7.10e-32 d.144.1.7 91391 1xjdA 345 8.38e-31 2f57A 317 9.59e-31 1f3mC 297 2.02e-30 1hcl d.144.1.7 41677 1yhvA 297 2.06e-30 2c30A 321 3.17e-29 2bfxA 284 4.96e-29 1t4hA 290 6.94e-29 d.144.1.7 106420 1o6lA 337 1.91e-28 d.144.1.7 81092 2bdwA 362 4.38e-28 1xh9A 350 1.42e-27 1s9jA 341 1.61e-27 1py5A 326 2.15e-27 d.144.1.7 104389 1ia8A 289 2.35e-27 1ia8A d.144.1.7 62112 2bvaA 292 2.60e-27 1uu3A 310 3.48e-27 d.144.1.7 99999 1h1wA 289 4.15e-27 d.144.1.7 83460 2a19B 284 6.01e-27 1o6yA 299 6.40e-27 d.144.1.7 81106 1apmE 350 1.38e-26 1cdkA d.144.1.7 41628 1blxA 326 1.41e-26 1hcl d.144.1.7 41596 1zrzA 364 1.81e-26 2eueA 279 1.82e-26 1jksA 294 1.91e-26 d.144.1.7 71710 1vjyA 303 1.92e-26 d.144.1.7 108633 1rdqE 350 3.66e-26 d.144.1.7 97314 1hcl 298 4.38e-26 1hcl d.144.1.7 41593 1zy4A 303 5.27e-26 1gz8A 299 6.91e-26 d.144.1.7 83405 1phk 298 2.02e-25 1cdkA d.144.1.7 41635 1p4fA 293 3.64e-25 d.144.1.7 104063 1tvoA 368 4.88e-25 3erk 364 5.34e-25 1hcl d.144.1.7 41654 1vzoA 355 7.06e-25 d.144.1.7 108971 2b9hA 353 3.15e-24 1pmnA 364 3.94e-24 d.144.1.7 94907 1wbsA 360 5.16e-24 1zz2A 360 2.03e-23 1r3cA 366 2.74e-23 d.144.1.7 96906 1tkiA 321 2.86e-23 1tkiA d.144.1.7 41638 1omwA 689 3.08e-23 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1zzlA 351 3.16e-23 1pme 380 3.29e-23 1hcl d.144.1.7 41653 2bikB 313 8.32e-23 1x8bA 289 8.96e-23 1xwsA 313 9.70e-23 2ac5A 316 1.15e-22 1ywrA 360 2.30e-22 2gfsA 372 3.09e-22 2ac3A 316 3.45e-22 1j1bA 420 4.34e-20 d.144.1.7 90758 1z57A 339 4.63e-20 1ckiA 317 4.95e-20 1csn d.144.1.7 41660 1ymiA 334 7.90e-20 2eu9A 355 5.32e-19 1om1A 332 3.05e-18 d.144.1.7 93347 1m2rA 327 4.88e-18 d.144.1.7 84760 1csn 298 1.65e-17 1csn d.144.1.7 41664 1q8yA 373 1.02e-16 d.144.1.7 96234 1howA 373 1.16e-16 1hcl d.144.1.7 41679 1wbpA 397 1.64e-15 1zarA 282 2.41e-04 1tqmA 282 3.77e-04 a.4.5.56,d.144.1.9 107236,107237 1rybA 212 9.67e-02 c.56.3.1 98098 1szwA 379 7.92e-01 d.265.1.4 99047 1je0A 236 9.17e-01 c.56.2.1 66581 1bsg 266 1.18e+00 1btl e.3.1.1 42729 1ermA 263 1.47e+00 1btl e.3.1.1 42690 1m40A 263 1.64e+00 e.3.1.1 74437 1btl 263 2.00e+00 1btl e.3.1.1 42691 1q52A 314 2.11e+00 c.14.1.3 95846 1i2sA 282 2.37e+00 e.3.1.1 71104 1b8aA 438 3.76e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 1tvxA 75 3.84e+00 1tvxA d.9.1.1 37441 1bueA 265 4.30e+00 1btl e.3.1.1 42727 1iysA 262 4.66e+00 e.3.1.1 90723 1vdxA 184 4.67e+00 1o51A 114 4.76e+00 d.58.5.4 92480 1t1dA 100 4.77e+00 1t1dA d.42.1.2 38637 1a68 95 4.83e+00 1t1dA d.42.1.2 38639 1bza 262 5.09e+00 1btl e.3.1.1 42701 1yljA 263 5.41e+00 2as0A 396 5.52e+00 1dsxA 87 6.30e+00 1t1dA d.42.1.2 38644 1g6aA 271 6.30e+00 1btl e.3.1.1 42704 1vimA 200 7.43e+00 c.80.1.3 100758 1hzoA 271 7.54e+00 e.3.1.1 71092 1jl2A 156 7.79e+00 c.55.3.1 66822 1mqsA 671 7.97e+00 e.25.1.1 79414 1e8aA 91 8.13e+00 1b4cA a.39.1.2 17188 1jb3A 131 8.71e+00 1jc7A b.40.3.2 62833 1qnrA 344 9.44e+00 1qnoA c.1.8.3 28834 1widA 130 9.57e+00 1ekfA 365 9.73e+00 1ekfA e.17.1.1 59445 1q4rA 112 9.83e+00 d.58.4.4 95823 6paxA 133 1.01e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 4blmA 265 1.14e+01 1btl e.3.1.1 42721 2gdnA 267 1.19e+01 1ji8A 111 1.33e+01 d.203.1.1 66733 1qwzA 235 1.36e+01 b.100.1.1 96510 1z5oA 242 1.39e+01 1s48A 609 1.42e+01 e.8.1.4 98475 1quqA 129 1.45e+01 1quqA b.40.4.3 25303 1g9mG 321 1.45e+01 1gc1G d.172.1.1 42492 2c5lC 117 1.45e+01 1fm0E 150 1.46e+01 1fmaE d.41.5.1 38629 1z7mA 344 1.46e+01 1vgjA 184 1.46e+01 1wduA 245 1.47e+01 d.151.1.1 109286 2booA 247 1.54e+01 1zbfA 142 1.57e+01 1ytw 306 1.60e+01 1ytw c.45.1.2 32689 1ogaD 215 1.62e+01 b.1.1.1,b.1.1.2 86990,86991 1lyvA 306 1.76e+01 c.45.1.2 74348 1jysA 242 1.79e+01 c.56.2.1 77216 1oo0A 147 1.84e+01 d.232.1.1 87182 1rzjG 321 1.86e+01 d.172.1.1 98200 2ajrA 331 1.89e+01 1gnkA 112 1.99e+01 2pii d.58.5.1 39073 1jhdA 396 2.02e+01 b.122.1.3,c.26.1.5 66712,66713 1rpjA 288 2.02e+01 2dri c.93.1.1 35656 2gmqA 118 2.03e+01 1ako 268 2.05e+01 1ako d.151.1.1 41779 1zthA 258 2.07e+01 2pth 193 2.12e+01 2pth c.56.3.1 33793 1e25A 282 2.12e+01 1e25A e.3.1.1 42731 1dkzA 219 2.14e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1whzA 70 2.17e+01 1voqa 90 2.26e+01 2ghpA 292 2.31e+01 3kvt 115 2.33e+01 1t1dA d.42.1.2 38642 1vjjA 692 2.38e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1wmhA 89 2.40e+01 1vyrA 364 2.51e+01 c.1.4.1 108906 1h61A 364 2.51e+01 1oyc c.1.4.1 60657 1n3gA 113 2.51e+01 d.204.1.1 79962 1gvoA 364 2.59e+01 c.1.4.1 76357 1n9bA 265 2.63e+01 e.3.1.1 85463 1qwyA 291 2.71e+01 b.84.3.2 96509 2a07F 93 2.77e+01 1ii7A 333 2.77e+01 1ii7A d.159.1.4 62415 1ryaA 160 2.84e+01 d.113.1.5 105122 1nw1A 429 2.93e+01 d.144.1.8 86286 1z5nA 242 2.94e+01 1k9sA 237 3.07e+01 c.56.2.1 68359 1vypX 364 3.08e+01 c.1.4.1 108905 1ecpA 238 3.13e+01 1ecpA c.56.2.1 33775 1bqcA 302 3.17e+01 1bqcA c.1.8.3 28831 1ky3A 182 3.19e+01 c.37.1.8 73193 2gk9A 426 3.20e+01 2abbA 364 3.28e+01 1d5rA 324 3.29e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1xknA 355 3.31e+01 1w1kA 560 3.35e+01 d.58.32.1,d.145.1.1 109059,109060 1yuwA 554 3.41e+01 1nd4A 264 3.44e+01 d.144.1.6 91815 1gz2A 142 3.46e+01 d.169.1.1 83392 1x3mA 415 3.54e+01 1txqA 93 3.54e+01 1gsoA 431 3.62e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1tbmA 326 3.64e+01 a.211.1.2 106744 1o7eA 276 3.71e+01 e.3.1.1 92622 1vk0A 206 3.78e+01 c.55.3.5 100839 1s3aA 102 3.82e+01 2a5lA 200 3.82e+01 1xe0A 114 3.87e+01 1lehA 364 3.88e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1ohtA 215 3.90e+01 d.118.1.1 87036 1nw3A 416 3.92e+01 c.66.1.31 86288 1ksoA 101 3.95e+01 a.39.1.2 72926 1tjyA 316 3.98e+01 c.93.1.1 107062 2b4yA 271 4.09e+01 1x31D 99 4.19e+01 1fs0E 138 4.19e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1y7pA 223 4.40e+01 1uh6A 100 4.43e+01 d.15.1.1 99394 1wjnA 97 4.45e+01 1r89A 437 4.59e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1xa1A 255 4.60e+01 e.3.1.1 109529 2a1hA 365 4.85e+01 1xkzA 255 4.87e+01 1u2cA 246 4.89e+01 b.1.6.2,d.272.1.1 107610,107611 7a3hA 303 4.92e+01 7a3hA c.1.8.3 28817 1inlA 296 4.98e+01 c.66.1.17 66220 1kr4A 125 4.98e+01 d.58.5.2 72889 1ppjE 196 5.07e+01 b.33.1.1,f.23.12.1 104260,104261 1v39 322 5.13e+01 3mag c.66.1.25 34206 1ntvA 152 5.18e+01 b.55.1.2 86168 2aqwA 332 5.23e+01 1jw9B 249 5.52e+01 c.111.1.1 67377 1k78A 149 5.60e+01 a.4.1.5,a.4.1.5 68255,68256 1hp8 68 5.64e+01 1hp8 a.17.1.1 16399 1j7lA 264 5.66e+01 d.144.1.6 62697 1zkeA 83 5.70e+01 1v7pC 200 5.79e+01 c.62.1.1 108408 1e8gA 560 5.80e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 2f4pA 147 5.83e+01 1k3eA 156 5.88e+01 d.198.1.1 68103 1v2dA 381 5.97e+01 c.67.1.1 108281 1gvnB 287 5.98e+01 c.37.1.21 76354 2c2hA 192 6.02e+01 1rie 129 6.06e+01 1rie b.33.1.1 24427 1qg7A 67 6.09e+01 1a15A d.9.1.1 37449 1k32A 1045 6.10e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1yovA 537 6.11e+01 1rxwA 336 6.12e+01 a.60.7.1,c.120.1.2 98059,98060 1top 162 6.15e+01 1ncx a.39.1.5 17223 1wmiB 67 6.19e+01 1z9tA 255 6.27e+01 2exrA 524 6.29e+01 1in4A 334 6.60e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1gudA 288 6.60e+01 c.93.1.1 83326 1o8rA 94 6.77e+01 d.234.1.1 86677 1ktaA 365 6.80e+01 e.17.1.1 77533 1hzdA 272 6.81e+01 c.14.1.3 65969 1r77A 103 6.92e+01 1e17A 150 7.04e+01 2hfh a.4.5.14 16143 1a32 88 7.07e+01 1a32 a.16.1.2 16384 1whxA 111 7.13e+01 1y2qA 143 7.28e+01 1p1lA 102 7.28e+01 d.58.5.2 87695 1yqbA 100 7.32e+01 1et9A 204 7.45e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1or7C 90 7.65e+01 a.180.1.1 87336 1aszB 490 7.68e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1kcfA 258 7.73e+01 a.140.2.1,c.55.3.7 68434,68435 1yixA 265 7.78e+01 1yymG 313 7.81e+01 1t2dA 322 8.00e+01 c.2.1.5,d.162.1.1 99084,99085 1vybA 238 8.02e+01 d.151.1.1 108897 1c93A 265 8.02e+01 2ebn c.1.8.5 28998 2bw3A 534 8.06e+01 1jilA 420 8.06e+01 c.26.1.1 66745 1lshB 319 8.10e+01 f.7.1.1 74245 2coeA 120 8.13e+01 1zb9A 143 8.21e+01 2cx1A 187 8.22e+01 1b8oA 284 8.33e+01 1b8oA c.56.2.1 33762 1vpt 348 8.46e+01 3mag c.66.1.25 34207 1v60A 123 8.50e+01 1fp1D 372 8.63e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1z08A 170 8.68e+01 1zs7A 190 8.70e+01 1vp9 322 8.76e+01 3mag c.66.1.25 34210 2dpmA 284 8.78e+01 2dpmA c.66.1.28 34246 1ucnA 152 8.89e+01 d.58.6.1 99183 1k4mA 213 8.92e+01 c.26.1.3 77258 1s1eA 224 8.99e+01 1o97D 320 8.99e+01 c.26.2.3,c.31.1.2 81233,81234