# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jpaA 312 5.46e-68 d.144.1.7 67011 1opjA 293 7.56e-67 d.144.1.7 87230 1ir3A 306 2.47e-66 1fmk d.144.1.7 41702 1p4oA 322 2.92e-65 d.144.1.7 87775 1qpcA 279 6.31e-64 1fgkA d.144.1.7 41685 1fgkA 310 1.60e-63 1fgkA d.144.1.7 41693 1t46A 313 2.50e-63 d.144.1.7 106397 1r0pA 312 2.53e-61 d.144.1.7 96734 1mp8A 281 1.47e-60 d.144.1.7 91384 1fvrA 327 4.08e-60 d.144.1.7 60047 1u59A 287 1.28e-59 d.144.1.7 107681 1u46A 291 2.95e-59 d.144.1.7 107656 1xbbA 291 1.65e-58 1ywnA 316 7.54e-58 2b7aA 293 1.31e-56 2evaA 307 7.35e-47 1mq4A 272 4.47e-37 d.144.1.7 91391 1f3mC 297 2.44e-36 1hcl d.144.1.7 41677 1yhvA 297 4.88e-36 2f57A 317 9.23e-36 1xjdA 345 1.16e-35 2c30A 321 6.90e-35 1ia8A 289 9.71e-34 1ia8A d.144.1.7 62112 1t4hA 290 1.25e-33 d.144.1.7 106420 2bfxA 284 1.30e-33 1o6lA 337 1.38e-32 d.144.1.7 81092 1o6yA 299 2.59e-32 d.144.1.7 81106 2bdwA 362 2.66e-32 2a19B 284 2.68e-32 1xh9A 350 3.54e-32 1gz8A 299 8.12e-32 d.144.1.7 83405 1py5A 326 8.22e-32 d.144.1.7 104389 1s9jA 341 8.52e-32 1hcl 298 1.25e-31 1hcl d.144.1.7 41593 1uu3A 310 1.53e-31 d.144.1.7 99999 1vjyA 303 1.82e-31 d.144.1.7 108633 1h1wA 289 1.92e-31 d.144.1.7 83460 2bvaA 292 5.49e-31 2eueA 279 9.59e-31 1zy4A 303 1.23e-30 1apmE 350 1.26e-30 1cdkA d.144.1.7 41628 1jksA 294 1.29e-30 d.144.1.7 71710 1zrzA 364 2.76e-30 1blxA 326 2.80e-30 1hcl d.144.1.7 41596 1rdqE 350 2.97e-30 d.144.1.7 97314 1phk 298 1.56e-29 1cdkA d.144.1.7 41635 1tvoA 368 3.62e-29 3erk 364 3.91e-29 1hcl d.144.1.7 41654 1pmnA 364 7.86e-29 d.144.1.7 94907 1p4fA 293 1.15e-28 d.144.1.7 104063 1omwA 689 4.37e-28 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1vzoA 355 6.27e-28 d.144.1.7 108971 2b9hA 353 9.96e-28 1wbsA 360 1.15e-27 1pme 380 1.68e-27 1hcl d.144.1.7 41653 1tkiA 321 2.04e-27 1tkiA d.144.1.7 41638 2ac5A 316 4.36e-27 1r3cA 366 5.25e-27 d.144.1.7 96906 2bikB 313 8.30e-27 1x8bA 289 1.05e-26 1zzlA 351 1.11e-26 1zz2A 360 1.30e-26 1xwsA 313 1.61e-26 1ywrA 360 3.30e-26 2ac3A 316 1.05e-25 2gfsA 372 5.38e-25 1j1bA 420 1.89e-24 d.144.1.7 90758 1ymiA 334 4.75e-24 1z57A 339 2.62e-23 1ckiA 317 2.69e-23 1csn d.144.1.7 41660 2eu9A 355 5.92e-22 1m2rA 327 3.00e-21 d.144.1.7 84760 1om1A 332 4.20e-21 d.144.1.7 93347 1csn 298 1.17e-20 1csn d.144.1.7 41664 1howA 373 5.31e-20 1hcl d.144.1.7 41679 1q8yA 373 5.95e-20 d.144.1.7 96234 1wbpA 397 5.98e-18 1zarA 282 3.26e-06 1tqmA 282 3.31e-06 a.4.5.56,d.144.1.9 107236,107237 1je0A 236 4.47e-01 c.56.2.1 66581 1rybA 212 5.52e-01 c.56.3.1 98098 1bsg 266 1.23e+00 1btl e.3.1.1 42729 1widA 130 1.28e+00 1szwA 379 1.40e+00 d.265.1.4 99047 1vgjA 184 1.53e+00 1vdxA 184 1.74e+00 1jysA 242 1.86e+00 c.56.2.1 77216 1z5oA 242 2.05e+00 1l7aA 318 2.14e+00 c.69.1.25 77772 1b8aA 438 2.14e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 1o51A 114 2.24e+00 d.58.5.4 92480 1nw1A 429 2.63e+00 d.144.1.8 86286 1nd4A 264 2.70e+00 d.144.1.6 91815 1i2sA 282 3.85e+00 e.3.1.1 71104 1z5nA 242 3.86e+00 1m40A 263 4.47e+00 e.3.1.1 74437 1zthA 258 4.49e+00 1btl 263 4.61e+00 1btl e.3.1.1 42691 1a68 95 4.67e+00 1t1dA d.42.1.2 38639 1ermA 263 4.77e+00 1btl e.3.1.1 42690 2ajrA 331 4.92e+00 1cl8A 276 4.99e+00 1ckqA c.52.1.1 33230 1t1dA 100 5.15e+00 1t1dA d.42.1.2 38637 1oo0A 147 5.22e+00 d.232.1.1 87182 1bueA 265 5.38e+00 1btl e.3.1.1 42727 1q52A 314 5.68e+00 c.14.1.3 95846 1yljA 263 5.73e+00 1dsxA 87 5.79e+00 1t1dA d.42.1.2 38644 2gdnA 267 6.66e+00 1g8iA 190 7.33e+00 1rec a.39.1.5 60363 1bza 262 7.40e+00 1btl e.3.1.1 42701 1quqA 129 7.53e+00 1quqA b.40.4.3 25303 1e7uA 961 7.73e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1tvxA 75 7.76e+00 1tvxA d.9.1.1 37441 1zbfA 142 7.92e+00 1hzoA 271 8.74e+00 e.3.1.1 71092 2feaA 236 9.16e+00 1ohtA 215 9.22e+00 d.118.1.1 87036 1jl2A 156 9.44e+00 c.55.3.1 66822 1fm0E 150 9.98e+00 1fmaE d.41.5.1 38629 1iysA 262 1.07e+01 e.3.1.1 90723 1ako 268 1.17e+01 1ako d.151.1.1 41779 1gnkA 112 1.20e+01 2pii d.58.5.1 39073 1xknA 355 1.28e+01 1lyvA 306 1.37e+01 c.45.1.2 74348 1e8aA 91 1.43e+01 1b4cA a.39.1.2 17188 2bfwA 200 1.43e+01 1e8gA 560 1.44e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1ytw 306 1.47e+01 1ytw c.45.1.2 32689 1txqA 93 1.50e+01 1g6aA 271 1.58e+01 1btl e.3.1.1 42704 1k3eA 156 1.60e+01 d.198.1.1 68103 1e8yA 966 1.67e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2booA 247 1.71e+01 1rpjA 288 1.72e+01 2dri c.93.1.1 35656 1whzA 70 1.74e+01 2coeA 120 1.74e+01 1jilA 420 1.77e+01 c.26.1.1 66745 1yixA 265 1.79e+01 1q4rA 112 1.82e+01 d.58.4.4 95823 1jb3A 131 1.90e+01 1jc7A b.40.3.2 62833 2f02A 323 1.93e+01 2awdA 323 1.94e+01 1kr4A 125 1.96e+01 d.58.5.2 72889 1ecpA 238 2.05e+01 1ecpA c.56.2.1 33775 1p1lA 102 2.18e+01 d.58.5.2 87695 1i9zA 347 2.22e+01 1i9yA d.151.1.2 62102 1gvjA 146 2.28e+01 a.4.5.21 90525 4blmA 265 2.28e+01 1btl e.3.1.1 42721 1z7mA 344 2.40e+01 1inlA 296 2.41e+01 c.66.1.17 66220 1w23A 360 2.42e+01 1y13A 181 2.50e+01 1wab 232 2.62e+01 1wab c.23.10.3 31341 6paxA 133 2.65e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 2fb0A 94 2.66e+01 1w1kA 560 2.67e+01 d.58.32.1,d.145.1.1 109059,109060 1g9mG 321 2.70e+01 1gc1G d.172.1.1 42492 1qnrA 344 2.70e+01 1qnoA c.1.8.3 28834 1ogaD 215 2.71e+01 b.1.1.1,b.1.1.2 86990,86991 1es9A 232 2.71e+01 1wab c.23.10.3 31340 1gz2A 142 2.72e+01 d.169.1.1 83392 1dkzA 219 2.73e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 2as0A 396 2.85e+01 1uumA 372 2.86e+01 c.1.4.1 100010 2gmqA 118 2.89e+01 1x3mA 415 3.01e+01 1odkA 235 3.19e+01 c.56.2.1 86863 1gudA 288 3.39e+01 c.93.1.1 83326 1ekfA 365 3.42e+01 1ekfA e.17.1.1 59445 1j93A 353 3.52e+01 c.1.22.1 66454 1j7lA 264 3.58e+01 d.144.1.6 62697 2gk9A 426 3.59e+01 1k9sA 237 3.61e+01 c.56.2.1 68359 1t9kA 347 3.62e+01 c.124.1.5 106721 1xe0A 114 3.65e+01 2ts1 419 3.66e+01 2ts1 c.26.1.1 31564 1f4qA 165 3.67e+01 1alvA a.39.1.8 17360 1z8kA 193 3.67e+01 1y7pA 223 3.73e+01 1eijA 80 3.73e+01 1eijA a.5.6.1 16298 1wmhA 89 3.84e+01 1vd2A 89 3.86e+01 d.15.2.2 108517 1cfr 285 3.91e+01 1cfr c.52.1.7 33312 1e17A 150 3.92e+01 2hfh a.4.5.14 16143 1e25A 282 3.92e+01 1e25A e.3.1.1 42731 1k94A 165 4.23e+01 a.39.1.8 68333 1l3iA 192 4.28e+01 c.66.1.22 77676 1q33A 292 4.38e+01 d.113.1.1 95657 1g0oA 283 4.38e+01 1ybvA c.2.1.2 60181 1kcfA 258 4.51e+01 a.140.2.1,c.55.3.7 68434,68435 1n9bA 265 4.51e+01 e.3.1.1 85463 1xk4C 113 4.52e+01 1z08A 170 4.66e+01 1n3gA 113 4.76e+01 d.204.1.1 79962 1ii7A 333 4.79e+01 1ii7A d.159.1.4 62415 1qwyA 291 4.79e+01 b.84.3.2 96509 1zkeA 83 4.83e+01 1by2 119 4.85e+01 1by2 d.170.1.1 42452 2az0A 73 4.94e+01 1ppjE 196 4.97e+01 b.33.1.1,f.23.12.1 104260,104261 1x42A 232 5.02e+01 1w3uA 362 5.12e+01 1aszB 490 5.17e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 2shpA 525 5.22e+01 2shpA c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2c0rA 362 5.30e+01 1et9A 204 5.31e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1w1oA 534 5.34e+01 d.58.32.4,d.145.1.1 109071,109072 1z9lA 128 5.35e+01 1ntvA 152 5.39e+01 b.55.1.2 86168 1u7kA 131 5.41e+01 1d5rA 324 5.42e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1vpt 348 5.46e+01 3mag c.66.1.25 34207 1jk0B 345 5.54e+01 a.25.1.2 63143 1v39 322 5.63e+01 3mag c.66.1.25 34206 1vp9 322 5.63e+01 3mag c.66.1.25 34210 1voqa 90 5.69e+01 1nf8A 207 5.69e+01 c.33.1.3 85630 2aqwA 332 5.74e+01 1ri5A 298 5.84e+01 c.66.1.34 97502 1qwzA 235 5.87e+01 b.100.1.1 96510 2brfA 110 5.92e+01 2liv 344 5.98e+01 2liv c.93.1.1 35708 1rzjG 321 5.98e+01 d.172.1.1 98200 3mag 307 6.05e+01 3mag c.66.1.25 34205 1a8q 274 6.07e+01 1brt c.69.1.12 34702 1jssA 224 6.11e+01 d.129.3.2 71844 1vhnA 318 6.12e+01 c.1.4.1 100693 1ndh 272 6.13e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1hxhA 253 6.29e+01 c.2.1.2 76725 2az2A 73 6.30e+01 1gsoA 431 6.34e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1h8eA 510 6.42e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1r89A 437 6.61e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1pulA 125 6.62e+01 1jnyA 435 6.65e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1ujxA 119 6.69e+01 b.26.1.2 99473 1yjmA 110 6.73e+01 1usgA 346 6.76e+01 c.93.1.1 99864 1zczA 464 6.86e+01 1b8oA 284 6.86e+01 1b8oA c.56.2.1 33762 1sauA 115 6.89e+01 1qghA 156 6.94e+01 1qghA a.25.1.1 16728 7a3hA 303 6.98e+01 7a3hA c.1.8.3 28817 1br1B 150 7.14e+01 1wdcC a.39.1.5 17309 1fp1D 372 7.16e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1pinA 163 7.24e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1wduA 245 7.25e+01 d.151.1.1 109286 2exrA 524 7.36e+01 1z15A 344 7.42e+01 1mho 88 7.43e+01 1b4cA a.39.1.2 17171 1fbnA 230 7.43e+01 1fbnA c.66.1.3 34181 2bodX 286 7.49e+01 1jffA 451 7.53e+01 c.32.1.1,d.79.2.1 62932,62933 1f3vA 179 7.59e+01 1f3vA d.58.22.1 39382 1mqsA 671 7.65e+01 e.25.1.1 79414 2bneA 241 7.68e+01 2c5lC 117 7.70e+01 2a07F 93 7.75e+01 2comA 124 7.79e+01 1ryaA 160 7.85e+01 d.113.1.5 105122 1g8sA 230 7.95e+01 c.66.1.3 90507 2ghpA 292 7.96e+01 1o6dA 163 7.96e+01 c.116.1.3 92567 1juhA 350 8.15e+01 b.82.1.5 71884 1sfp 114 8.19e+01 1sfp b.23.1.1 23895 1nnsA 326 8.49e+01 c.88.1.1 85910 1hyeA 313 8.54e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1atlA 202 8.56e+01 1atlA d.92.1.9 40322 2a1hA 365 8.64e+01 1ksoA 101 8.70e+01 a.39.1.2 72926 1dv1A 449 8.73e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1yuwA 554 8.74e+01 1wjnA 97 8.75e+01 1ukuA 102 8.76e+01 d.58.5.2 99533 1twdA 256 8.86e+01 c.1.30.1 107397 1mvwC 147 8.89e+01 i.15.1.1 79525 1lci 550 8.89e+01 1lci e.23.1.1 43349