# List of top-scoring protein chains for T0290.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1awqA 164 1.18e-37 2cpl b.62.1.1 27461 1yndA 165 1.18e-37 1m9eA 164 1.49e-37 b.62.1.1 84894 2alfA 164 1.98e-37 1cynA 178 2.86e-37 2cpl b.62.1.1 27489 2bitX 165 2.87e-37 1ihgA 370 7.91e-37 2cpl a.118.8.1,b.62.1.1 62380,62381 1dywA 173 8.55e-37 2cpl b.62.1.1 27505 1a58 177 1.14e-36 2cpl b.62.1.1 27495 1qngA 170 1.75e-36 2cpl b.62.1.1 27507 1zmfA 165 2.20e-36 1zcxA 178 2.23e-36 1xo7A 166 3.71e-36 1qnhA 170 4.77e-36 2cpl b.62.1.1 27508 1qoiA 177 6.27e-36 2cpl b.62.1.1 27490 2rmcA 182 6.37e-36 2cpl b.62.1.1 27491 2eslA 190 6.58e-36 2cfeA 162 6.74e-36 1vdnA 162 1.41e-35 1h0pA 182 2.32e-35 b.62.1.1 76450 2a2nA 176 1.26e-33 1xyhA 161 1.55e-33 1xwnA 174 2.75e-33 1zkcA 197 3.99e-33 1z81A 229 1.50e-31 2fu0A 160 2.00e-31 2b71A 196 5.51e-31 2c3bA 172 6.11e-31 1w74A 191 6.34e-30 1v9tA 166 4.87e-28 b.62.1.1 108451 1clh 166 5.42e-28 2cpl b.62.1.1 27512 2nul 164 6.54e-28 2cpl b.62.1.1 27511 1lopA 164 1.73e-27 2cpl b.62.1.1 27510 2fug5 207 2.23e+00 2as9A 210 2.70e+00 1wq5A 268 3.75e+00 1ufbA 127 4.57e+00 a.24.16.3 99331 2a9vA 212 6.82e+00 1p6qA 129 9.20e+00 c.23.1.1 104074 1q45A 391 1.44e+01 c.1.4.1 95780 1o02A 500 1.77e+01 c.82.1.1 86499 1cw3A 494 1.78e+01 1bpwA c.82.1.1 35349 1zumA 500 1.78e+01 1wi1A 126 1.83e+01 2sil 381 2.00e+01 3sil b.68.1.1 27543 1xc4A 268 2.03e+01 1zx8A 136 2.13e+01 3sil 379 2.13e+01 3sil b.68.1.1 27542 2masA 314 2.30e+01 2masA c.70.1.1 34810 1xocA 520 2.33e+01 1df9A 191 2.49e+01 1befA b.47.1.3 26420 2bdrA 175 2.75e+01 2b61A 377 2.80e+01 2b4wA 315 3.01e+01 1o04A 500 3.10e+01 c.82.1.1 86508 1icpA 376 3.12e+01 1oyc c.1.4.1 62270 2fomB 185 3.44e+01 1mxiA 160 3.49e+01 c.116.1.1 79646 1a2n 419 3.50e+01 1uae d.68.2.2 39575 1dgnA 89 3.69e+01 1dgnA a.77.1.3 18436 1ag8A 499 3.96e+01 1bpwA c.82.1.1 35341 1uae 419 4.20e+01 1uae d.68.2.2 39574 1ichA 112 4.20e+01 a.77.1.2 71182 1n7dA 699 4.20e+01 b.68.5.1,g.3.11.1,g.3.11.1,g.3.11.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1 80236,80237,80238,80239,80240,80241,80242,80243,80244,80245 1tv5A 443 4.44e+01 2fz5A 137 4.73e+01 1zroA 602 5.20e+01 2bmbA 545 5.43e+01 1qe0A 420 5.44e+01 1adjA c.51.1.1,d.104.1.1 33186,40735 1xcfA 268 5.58e+01 1befA 181 5.62e+01 1befA b.47.1.3 26419 1lluA 342 5.86e+01 b.35.1.2,c.2.1.1 91064,91065 2gfhA 260 6.44e+01 1vjvA 415 6.54e+01 d.3.1.9 108632 1ea6A 364 6.69e+01 d.14.1.3,d.122.1.2 64871,64872 1va8A 113 6.73e+01 1h7sA 365 6.76e+01 d.14.1.3,d.122.1.2 65705,65706 1wisA 124 6.77e+01 1f6wA 533 6.94e+01 2bce c.69.1.1 34629 1ldr 43 7.06e+01 1ajj g.12.1.1 44616 1x63A 82 7.07e+01 1dz3A 130 7.21e+01 1dz3A c.23.1.1 31105 1hxgA 548 7.35e+01 a.102.4.1,a.128.1.3 83645,83646 2g3pA 225 7.37e+01 1g3p b.37.1.1,b.37.1.1 24791,24792 2c6nA 612 7.46e+01 1hxaA 548 7.63e+01 a.102.4.1,a.128.1.3 83641,83642 1tj2A 584 7.74e+01 1y7eA 458 7.74e+01 1tiwA 602 7.77e+01 1pwhA 327 7.94e+01 c.79.1.1 95224 1b35D 57 8.29e+01 1b35D b.121.4.1 83038 1j03A 102 8.60e+01 d.120.1.2 90733 1k87A 669 8.60e+01 a.176.1.1,c.1.23.2 77286,77287 1movA 219 8.61e+01 d.22.1.1 85038 1mouA 219 8.79e+01 d.22.1.1 85037 1dc1A 323 8.99e+01 1dc1A c.52.1.11 33321