# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yndA 165 1.57e-28 1dywA 173 1.73e-28 2cpl b.62.1.1 27505 1ihgA 370 7.73e-28 2cpl a.118.8.1,b.62.1.1 62380,62381 1h0pA 182 6.47e-27 b.62.1.1 76450 1lopA 164 3.96e-21 2cpl b.62.1.1 27510 1mxiA 160 1.14e+00 c.116.1.1 79646 1dqiA 124 3.80e+00 1do6A b.1.13.1 22357 1rx0A 393 4.70e+00 a.29.3.1,e.6.1.1 98007,98008 1lq9A 112 4.87e+00 d.58.4.3 78129 1vjvA 415 6.82e+00 d.3.1.9 108632 1v0wA 506 7.67e+00 d.136.1.2,d.136.1.2 108220,108221 1h4xA 117 9.06e+00 1auz c.13.2.1 60626 1vfjA 116 9.07e+00 1o7iA 119 9.08e+00 b.40.4.3 86642 1qwgA 251 1.01e+01 c.1.27.1 96473 1dz3A 130 1.04e+01 1dz3A c.23.1.1 31105 1ezwA 349 1.05e+01 1ezwA c.1.16.3 29558 1pa1A 310 1.10e+01 c.45.1.2 94404 1uxy 340 1.16e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1e9pA 151 1.18e+01 1mfmA b.1.8.1 22215 1ewnA 219 1.20e+01 1bnkA b.46.1.2 25762 2gk3A 256 1.21e+01 1zk5A 176 1.27e+01 1erjA 393 1.35e+01 1erjA b.69.4.1 27660 1b77A 228 1.47e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1evlA 401 1.56e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1fxoA 293 1.62e+01 1g0rA c.68.1.6 34524 1a70 97 1.67e+01 1awd d.15.4.1 37678 1us5A 314 1.78e+01 c.94.1.1 99856 1vpjA 192 1.80e+01 1umkA 275 1.86e+01 1isiA 265 1.91e+01 e.4.1.1 71394 1zoiA 276 1.96e+01 1qe3A 489 1.97e+01 2bce c.69.1.1 34630 1ejfA 125 2.00e+01 1ejfA b.15.1.2 23683 1lam 484 2.05e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1i6aA 219 2.10e+01 c.94.1.1 61827 1hyvA 166 2.12e+01 1b9dA c.55.3.2 61424 1o9wA 177 2.33e+01 b.2.3.5 86713 1cliA 345 2.33e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1pbyA 489 2.35e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1oxxK 353 2.47e+01 b.40.6.3,c.37.1.12 93715,93716 1ugpB 226 2.50e+01 b.34.4.4 107832 1g291 372 2.53e+01 1g291 1fjgE 162 2.59e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1h5rA 293 2.60e+01 c.68.1.6 65623 1fs0E 138 2.66e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1q7zA 566 2.71e+01 c.1.21.2,c.1.26.1 96090,96091 1s2oA 244 2.71e+01 1lqtA 456 2.86e+01 c.3.1.1,c.4.1.1 74198,74199 1m6pA 152 2.90e+01 1m6pA b.64.1.1 27519 1h7sA 365 2.91e+01 d.14.1.3,d.122.1.2 65705,65706 1f39A 101 2.97e+01 1umuA b.87.1.1 28386 1xe7A 203 2.99e+01 1c4rA 182 3.08e+01 1c4rA b.29.1.4 24229 1i12A 160 3.11e+01 1i21A d.108.1.1 61515 1idpA 172 3.20e+01 d.17.4.1 83685 1vlaA 150 3.27e+01 d.227.1.2 108735 1oalA 151 3.30e+01 b.1.8.1 86739 1sgwA 214 3.32e+01 c.37.1.12 105541 1e30A 155 3.33e+01 1rcy b.6.1.1 23016 1a8s 273 3.35e+01 1brt c.69.1.12 34710 2bo9B 222 3.38e+01 1fonA 240 3.45e+01 5ptp b.47.1.2 26231 1gteA 1025 3.47e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1lb6A 160 3.63e+01 b.8.1.1 73798 1frrA 95 3.79e+01 1awd d.15.4.1 37674 1uwcA 261 3.81e+01 c.69.1.17 100101 2trxA 108 3.87e+01 1thx c.47.1.1 32719 1ja1A 622 3.95e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1acf 125 4.09e+01 3nul d.110.1.1 40882 2gf9A 189 4.11e+01 1i3cA 149 4.18e+01 c.23.1.1 71112 1rg8A 146 4.26e+01 1lf7A 182 4.48e+01 b.60.1.1 73878 1bd0A 388 4.49e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 1w2wB 191 4.52e+01 1faaA 124 4.57e+01 1erv c.47.1.1 32738 1ci9A 392 4.58e+01 e.3.1.1 64767 1edqA 540 4.62e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1ro0A 216 4.68e+01 d.264.1.2 97664 1a64A 97 4.69e+01 1cdcA b.1.1.1 19750 1ntyA 311 4.72e+01 a.87.1.1,b.55.1.1 103873,103874 1lzlA 323 4.75e+01 c.69.1.2 78306 1ogwA 76 4.87e+01 d.15.1.1 87001 1pbyB 337 4.88e+01 b.69.2.2 94422 1dkiA 371 4.90e+01 1dkiA d.3.1.1 37090 1j58A 385 4.96e+01 b.82.1.2 71531 1jfbA 404 5.00e+01 a.104.1.1 66624 1e1oA 504 5.03e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1crzA 403 5.18e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1dg9A 157 5.21e+01 1dg9A c.44.1.1 32637 1g5bA 221 5.35e+01 1g5bA d.159.1.3 60261 1ocyA 198 5.37e+01 d.231.1.1 86817 1qreA 247 5.75e+01 1qreA b.81.1.5 28066 1f20A 435 5.92e+01 b.43.4.1,c.25.1.4 64932,64933 1cr5A 189 5.95e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1ieaB 228 6.13e+01 1iakB b.1.1.2,d.19.1.1 21632,38206 1fsgA 233 6.19e+01 1qk3A c.61.1.1 34029 1kngA 156 6.30e+01 c.47.1.10 72777 1ikoP 178 6.40e+01 b.6.1.5 71243 1in6A 334 6.44e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1llnA 262 6.54e+01 d.165.1.1 84625 1jbeA 128 6.75e+01 3chy c.23.1.1 62845 1g1tA 157 6.86e+01 d.169.1.1,g.3.11.1 65104,65105 1bd3A 243 7.00e+01 1bd3A c.61.1.1 34098 1dytA 133 7.03e+01 7rsa d.5.1.1 37288 1xk7A 408 7.19e+01 1a73A 163 7.33e+01 1a73A d.4.1.3 37145 1ymkA 175 7.42e+01 1jmxA 494 7.47e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1bqcA 302 7.50e+01 1bqcA c.1.8.3 28831 1v8hA 107 7.65e+01 1jer 138 7.70e+01 2cbp b.6.1.1 23022 1qwyA 291 7.72e+01 b.84.3.2 96509 1bfg 146 7.79e+01 1bfg b.42.1.1 25485 1iq9A 61 7.81e+01 g.7.1.1 90669 1mh1 186 8.30e+01 1eesA c.37.1.8 32002 1j71A 334 8.39e+01 1eagA b.50.1.2 62669 1gtmA 419 8.41e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1n40A 396 8.43e+01 a.104.1.1 79977 1nytA 271 8.44e+01 c.2.1.7,c.58.1.5 86417,86418 1gesA 450 8.59e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1jihA 531 8.67e+01 d.240.1.1,e.8.1.7 90374,90375 2bikB 313 8.74e+01 1pbjA 125 8.76e+01 d.37.1.1,d.37.1.1 94414,94415 1mb3A 124 8.93e+01 c.23.1.1 78907