# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yndA 165 1.75e-39 1dywA 173 3.52e-39 2cpl b.62.1.1 27505 1ihgA 370 4.06e-39 2cpl a.118.8.1,b.62.1.1 62380,62381 1h0pA 182 5.11e-37 b.62.1.1 76450 1lopA 164 5.15e-29 2cpl b.62.1.1 27510 1pa1A 310 4.78e-01 c.45.1.2 94404 1mxiA 160 1.51e+00 c.116.1.1 79646 1gteA 1025 2.04e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1dqiA 124 2.24e+00 1do6A b.1.13.1 22357 2gk3A 256 2.59e+00 1vjvA 415 3.03e+00 d.3.1.9 108632 1v0wA 506 3.20e+00 d.136.1.2,d.136.1.2 108220,108221 1h7sA 365 3.45e+00 d.14.1.3,d.122.1.2 65705,65706 1dz3A 130 3.86e+00 1dz3A c.23.1.1 31105 1lam 484 4.94e+00 1lam c.50.1.1,c.56.5.3 33166,33829 1e9pA 151 5.13e+00 1mfmA b.1.8.1 22215 1a8s 273 6.04e+00 1brt c.69.1.12 34710 1lq9A 112 6.97e+00 d.58.4.3 78129 1c4rA 182 7.23e+00 1c4rA b.29.1.4 24229 1h4xA 117 7.53e+00 1auz c.13.2.1 60626 1b77A 228 8.03e+00 1b77A d.131.1.2,d.131.1.2 41362,41363 1zoiA 276 9.48e+00 1o7iA 119 1.02e+01 b.40.4.3 86642 1ewnA 219 1.20e+01 1bnkA b.46.1.2 25762 1bdfA 235 1.22e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1qwgA 251 1.28e+01 c.1.27.1 96473 1ezwA 349 1.35e+01 1ezwA c.1.16.3 29558 1fs0E 138 1.39e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1vfjA 116 1.49e+01 1i12A 160 1.53e+01 1i21A d.108.1.1 61515 1evlA 401 1.83e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1g5bA 221 1.98e+01 1g5bA d.159.1.3 60261 1a70 97 2.07e+01 1awd d.15.4.1 37678 1umkA 275 2.09e+01 1dkiA 371 2.15e+01 1dkiA d.3.1.1 37090 1j58A 385 2.23e+01 b.82.1.2 71531 1g1tA 157 2.42e+01 d.169.1.1,g.3.11.1 65104,65105 1lb6A 160 2.49e+01 b.8.1.1 73798 1frrA 95 2.52e+01 1awd d.15.4.1 37674 1f39A 101 2.65e+01 1umuA b.87.1.1 28386 1ieaB 228 2.75e+01 1iakB b.1.1.2,d.19.1.1 21632,38206 1o9wA 177 2.83e+01 b.2.3.5 86713 1nszA 347 2.85e+01 b.30.5.4 80724 2gf9A 189 2.86e+01 1rg8A 146 2.96e+01 2bo9B 222 3.23e+01 1xe7A 203 3.29e+01 1vpjA 192 3.35e+01 1rx0A 393 3.37e+01 a.29.3.1,e.6.1.1 98007,98008 1isiA 265 3.39e+01 e.4.1.1 71394 1qreA 247 3.39e+01 1qreA b.81.1.5 28066 1pbyA 489 3.40e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1oalA 151 3.40e+01 b.1.8.1 86739 1lf7A 182 3.43e+01 b.60.1.1 73878 1erjA 393 3.50e+01 1erjA b.69.4.1 27660 1ve2A 235 3.51e+01 1fjgE 162 3.54e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1dc1A 323 3.57e+01 1dc1A c.52.1.11 33321 1i3cA 149 3.60e+01 c.23.1.1 71112 1j71A 334 3.64e+01 1eagA b.50.1.2 62669 1bcpB 199 3.65e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 2gefA 217 3.67e+01 1w96A 554 3.83e+01 1s2oA 244 3.91e+01 1i6aA 219 3.97e+01 c.94.1.1 61827 1xqaA 113 3.99e+01 1e1oA 504 4.00e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1crzA 403 4.11e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1dg9A 157 4.30e+01 1dg9A c.44.1.1 32637 1qe3A 489 4.31e+01 2bce c.69.1.1 34630 1aa6 715 4.45e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1cliA 345 4.62e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1sgwA 214 4.67e+01 c.37.1.12 105541 1bed 181 4.72e+01 1fvkA c.47.1.13 90330 1f7dA 136 4.79e+01 1dun b.85.4.1 28353 1ntyA 311 4.79e+01 a.87.1.1,b.55.1.1 103873,103874 1f20A 435 4.81e+01 b.43.4.1,c.25.1.4 64932,64933 1ja1A 622 4.96e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1q7zA 566 4.97e+01 c.1.21.2,c.1.26.1 96090,96091 1llnA 262 5.00e+01 d.165.1.1 84625 1zk5A 176 5.09e+01 1h54A 754 5.22e+01 a.102.1.4,b.30.5.3 60634,60635 1g291 372 5.28e+01 1g291 1jmuB 666 5.32e+01 1idpA 172 5.37e+01 d.17.4.1 83685 1hyvA 166 5.38e+01 1b9dA c.55.3.2 61424 1e5kA 201 5.39e+01 1fr9A c.68.1.8 34578 1nkiA 135 5.40e+01 d.32.1.2 91941 1rc9A 221 5.58e+01 1us5A 314 5.71e+01 c.94.1.1 99856 1fonA 240 5.78e+01 5ptp b.47.1.2 26231 1m6pA 152 5.84e+01 1m6pA b.64.1.1 27519 1v6sA 390 5.94e+01 c.86.1.1 100424 1efpB 252 6.09e+01 1efvB c.26.2.3 31636 1v8hA 107 6.27e+01 1jfbA 404 6.30e+01 a.104.1.1 66624 1uufA 369 6.35e+01 b.35.1.2,c.2.1.1 100006,100007 1jbeA 128 6.48e+01 3chy c.23.1.1 62845 1xk7A 408 6.66e+01 1qwyA 291 6.72e+01 b.84.3.2 96509 1fvuB 125 6.74e+01 1ixxB d.169.1.1 42346 1ijtA 128 6.74e+01 1bfg b.42.1.1 62510 1oxxK 353 6.80e+01 b.40.6.3,c.37.1.12 93715,93716 1thfD 253 6.96e+01 1thfD c.1.2.1 28535 1w0pA 781 7.06e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1dytA 133 7.08e+01 7rsa d.5.1.1 37288 1nytA 271 7.08e+01 c.2.1.7,c.58.1.5 86417,86418 1q3oA 109 7.18e+01 b.36.1.1 95700 1bfg 146 7.34e+01 1bfg b.42.1.1 25485 1h5rA 293 7.49e+01 c.68.1.6 65623 1jr7A 311 7.59e+01 b.82.2.3 63255 1ocyA 198 7.62e+01 d.231.1.1 86817 1juhA 350 7.65e+01 b.82.1.5 71884 1vlaA 150 7.71e+01 d.227.1.2 108735 1iq9A 61 7.75e+01 g.7.1.1 90669 1eerB 227 7.89e+01 1eerB b.1.2.1,b.1.2.1 22011,22012 1dwnA 127 7.89e+01 1dwnA d.85.1.1 40141 1byrA 155 7.98e+01 1byrA d.136.1.1 41450 1c96A 753 8.11e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1uxzA 131 8.15e+01 b.18.1.10 100170 1vyrA 364 8.26e+01 c.1.4.1 108906 2trxA 108 8.30e+01 1thx c.47.1.1 32719 1ikoP 178 8.35e+01 b.6.1.5 71243 1cr5A 189 8.42e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1acf 125 8.44e+01 3nul d.110.1.1 40882 1jer 138 8.51e+01 2cbp b.6.1.1 23022 1kngA 156 8.62e+01 c.47.1.10 72777 1jatB 138 8.64e+01 1jatB d.20.1.1 62819 1n40A 396 8.68e+01 a.104.1.1 79977 1faaA 124 8.82e+01 1erv c.47.1.1 32738 1ugpB 226 8.84e+01 b.34.4.4 107832 1ktgA 138 8.94e+01 d.113.1.1 72972 1gd0A 122 8.97e+01 1dptA d.80.1.3 39834