# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1a58 177 8.88e-33 2cpl b.62.1.1 27495 1dywA 173 1.29e-32 2cpl b.62.1.1 27505 1ihgA 370 2.17e-32 2cpl a.118.8.1,b.62.1.1 62380,62381 2bitX 165 2.96e-32 1awsA 164 4.58e-32 2cpl b.62.1.1 27431 2cpl 165 4.67e-32 2cpl b.62.1.1 27420 1yndA 165 5.24e-32 1awqA 164 5.58e-32 2cpl b.62.1.1 27461 2rmcA 182 1.01e-31 2cpl b.62.1.1 27491 1xo7A 166 1.74e-31 1zcxA 178 1.92e-31 2cfeA 162 2.11e-31 1qoiA 177 5.22e-31 2cpl b.62.1.1 27490 1vdnA 162 5.63e-31 1h0pA 182 2.49e-30 b.62.1.1 76450 1zkcA 197 2.05e-29 2a2nA 176 3.29e-29 2b71A 196 4.10e-28 2fu0A 160 8.26e-28 1xwnA 174 1.46e-27 1j2aA 166 5.10e-26 b.62.1.1 90779 1v9tA 166 3.19e-25 b.62.1.1 108451 1lopA 164 1.71e-24 2cpl b.62.1.1 27510 1vr0A 247 2.21e+00 1zx8A 136 2.25e+00 1gggA 226 2.30e+00 1lst c.94.1.1 35817 1wu7A 434 2.95e+00 1qwgA 251 3.22e+00 c.1.27.1 96473 1wdnA 226 5.38e+00 1lst c.94.1.1 35816 1gteA 1025 5.51e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1h7wA 1025 5.69e+00 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2b8mA 117 5.79e+00 1mxiA 160 6.06e+00 c.116.1.1 79646 2cy7A 396 6.08e+00 1ewnA 219 6.20e+00 1bnkA b.46.1.2 25762 1qmpA 130 7.21e+00 1dz3A c.23.1.1 31106 1gowA 489 7.90e+00 1qvbA c.1.8.4 28981 1o04A 500 7.92e+00 c.82.1.1 86508 1erjA 393 9.16e+00 1erjA b.69.4.1 27660 1f0iA 504 9.42e+00 1f0iA d.136.1.2,d.136.1.2 59566,59567 1lq9A 112 9.45e+00 d.58.4.3 78129 1mdbA 539 9.53e+00 e.23.1.1 79008 1qf6A 642 1.04e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1v0wA 506 1.05e+01 d.136.1.2,d.136.1.2 108220,108221 1dz3A 130 1.14e+01 1dz3A c.23.1.1 31105 1uwsA 489 1.18e+01 c.1.8.4 108073 1evlA 401 1.35e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1wi1A 126 1.35e+01 1zoxA 113 1.45e+01 1g7fA 298 1.57e+01 1pty c.45.1.2 60330 1lylA 504 1.65e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1b77A 228 1.65e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1oa4A 222 1.65e+01 b.29.1.11 86731 2bh9A 489 1.70e+01 1do6A 124 1.79e+01 1do6A b.1.13.1 22361 1lf7A 182 1.80e+01 b.60.1.1 73878 1tllA 688 1.80e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 2azpA 318 1.92e+01 2bf6A 449 1.95e+01 1wriA 93 2.01e+01 1ciy 590 2.06e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1e9pA 151 2.08e+01 1mfmA b.1.8.1 22215 1k87A 669 2.09e+01 a.176.1.1,c.1.23.2 77286,77287 1wggA 96 2.09e+01 1o7iA 119 2.10e+01 b.40.4.3 86642 1befA 181 2.11e+01 1befA b.47.1.3 26419 2gefA 217 2.13e+01 1yo8A 634 2.14e+01 1xhnA 184 2.16e+01 1q0eA 152 2.19e+01 b.1.8.1 95504 1xknA 355 2.28e+01 1ve4A 206 2.29e+01 1m3iA 471 2.29e+01 f.9.1.1 91178 1cbjA 151 2.36e+01 1mfmA b.1.8.1 22213 2b7yA 182 2.48e+01 1vqvA 306 2.51e+01 2f71A 298 2.60e+01 1y7mA 164 2.62e+01 1a70 97 2.64e+01 1awd d.15.4.1 37678 1pa1A 310 2.64e+01 c.45.1.2 94404 1dqiA 124 2.66e+01 1do6A b.1.13.1 22357 1vfjA 116 2.68e+01 1f20A 435 2.71e+01 b.43.4.1,c.25.1.4 64932,64933 1khbA 625 2.72e+01 c.91.1.1,c.109.1.1 68606,68607 1vi6A 208 2.73e+01 c.23.15.1 100736 1c4rA 182 2.93e+01 1c4rA b.29.1.4 24229 1ww9A 392 3.00e+01 2b4wA 315 3.07e+01 1h5rA 293 3.10e+01 c.68.1.6 65623 1ptvA 321 3.15e+01 1pty c.45.1.2 32665 2ar9A 278 3.27e+01 1fxoA 293 3.42e+01 1g0rA c.68.1.6 34524 1v9sA 208 3.46e+01 1w96A 554 3.46e+01 1qlpA 394 3.53e+01 1ovaA e.1.1.1 42628 1s8nA 205 3.57e+01 c.23.1.1 105374 1kv9A 668 3.58e+01 a.3.1.6,b.70.1.1 73056,73057 1ezwA 349 3.63e+01 1ezwA c.1.16.3 29558 3il8 72 3.63e+01 1tvxA d.9.1.1 37356 2fomB 185 3.71e+01 1ja1A 622 3.80e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1mp4A 292 3.82e+01 c.68.1.6 79376 1y3jA 77 3.86e+01 1sq2N 113 3.88e+01 b.1.1.1 105881 1b1cA 181 4.02e+01 1amoA c.23.5.2 31212 1p7tA 731 4.06e+01 c.1.13.1 94319 1u2cA 246 4.11e+01 b.1.6.2,d.272.1.1 107610,107611 2a46A 238 4.11e+01 1rc9A 221 4.14e+01 1q1oA 98 4.25e+01 d.15.2.2 95596 1fonA 240 4.29e+01 5ptp b.47.1.2 26231 1v8hA 107 4.32e+01 1kb0A 677 4.35e+01 a.3.1.6,b.70.1.1 68378,68379 1lqtA 456 4.44e+01 c.3.1.1,c.4.1.1 74198,74199 1pfo 500 4.46e+01 1pfo f.9.1.1 43826 1llnA 262 4.52e+01 d.165.1.1 84625 1us5A 314 4.52e+01 c.94.1.1 99856 1nbfD 76 4.60e+01 d.15.1.1 80390 1wloA 136 4.73e+01 1usuB 170 4.73e+01 d.83.2.1 99886 1fsgA 233 4.74e+01 1qk3A c.61.1.1 34029 2gk3A 256 4.80e+01 1jmxA 494 4.82e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1foeA 377 4.85e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1v9nA 360 4.96e+01 1npuA 117 5.13e+01 b.1.1.1 92038 1wraA 308 5.20e+01 1c0eA 157 5.20e+01 1dg9A c.44.1.1 32638 1dkiA 371 5.33e+01 1dkiA d.3.1.1 37090 2bibA 547 5.39e+01 1qcsA 211 5.42e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1oalA 151 5.49e+01 b.1.8.1 86739 1qwtA 255 5.67e+01 b.26.1.3 96501 1dkgA 197 5.69e+01 1dkgA b.73.1.1,h.1.9.1 27812,45626 1ogwA 76 5.75e+01 d.15.1.1 87001 1e30A 155 5.77e+01 1rcy b.6.1.1 23016 1kskA 234 5.85e+01 d.66.1.5,d.265.1.3 72920,90389 1zoiA 276 5.88e+01 1cr5A 189 5.91e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1a04A 215 5.93e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1g1tA 157 5.98e+01 d.169.1.1,g.3.11.1 65104,65105 1v5sA 126 6.02e+01 d.129.6.1 108384 1ul7A 102 6.04e+01 d.129.6.1 99540 1xewX 182 6.04e+01 1pswA 348 6.05e+01 c.87.1.7 88287 1e1oA 504 6.05e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1k66A 149 6.06e+01 c.23.1.1 90941 1iqaA 160 6.14e+01 b.22.1.1 71274 1j58A 385 6.16e+01 b.82.1.2 71531 1w2xA 758 6.24e+01 c.14.1.4,c.14.1.4 109134,109135 1yymG 313 6.37e+01 1p63A 144 6.37e+01 b.42.1.1 94153 1wftA 123 6.41e+01 2cy5A 140 6.45e+01 1u0sY 118 6.49e+01 c.23.1.1 107566 1s55A 156 6.50e+01 1tmy 120 6.53e+01 1dbwA c.23.1.1 31083 1wnfA 328 6.54e+01 1t5rA 284 6.58e+01 f.6.1.1 106465 1mpgA 282 6.68e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1sg0A 230 6.70e+01 1rg8A 146 6.74e+01 1nb8A 353 6.78e+01 d.3.1.9 80385 1jmmA 377 6.80e+01 b.30.6.1 71749 1ubi 76 6.82e+01 1ubi d.15.1.1 37584 1lam 484 6.89e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1z4vA 532 6.96e+01 1u5uA 374 7.00e+01 2bm3A 166 7.00e+01 2bvfA 459 7.01e+01 1bmv2 374 7.01e+01 1bmv2 1fa8A 135 7.05e+01 1qipA d.32.1.1 38486 1zx1A 231 7.18e+01 2bw2A 140 7.26e+01 1zq4A 693 7.27e+01 1xk7A 408 7.32e+01 1lzlA 323 7.39e+01 c.69.1.2 78306 1wisA 124 7.41e+01 2b0aA 186 7.46e+01 1z4xA 532 7.47e+01 1vdxA 184 7.53e+01 1k68A 140 7.53e+01 c.23.1.1 90943 1mveA 243 7.54e+01 b.29.1.2 85140 1vp4A 425 7.57e+01 1djnA 729 7.74e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28612,30313,30598 2coeA 120 7.78e+01 1umkA 275 7.79e+01 1y7bA 542 7.81e+01 2aaiB 262 7.81e+01 1abrB b.42.2.1,b.42.2.1 25561,25562 2b59A 187 7.83e+01 1cjbA 231 7.86e+01 1qk3A c.61.1.1 34079 1e6yB 433 8.07e+01 1mroB a.89.1.1,d.58.31.2 18535,39453 1zdrA 164 8.18e+01 1fvuB 125 8.24e+01 1ixxB d.169.1.1 42346 1bfg 146 8.29e+01 1bfg b.42.1.1 25485 1vjvA 415 8.31e+01 d.3.1.9 108632 1krs 120 8.44e+01 1krs b.40.4.1 25256 2d0eA 407 8.45e+01 1wbiA 129 8.48e+01 1p42A 270 8.53e+01 d.14.1.7,d.14.1.7 87754,87755 4fgf 146 8.54e+01 1bfg b.42.1.1 25486 1g291 372 8.62e+01 1g291 1d8cA 723 8.66e+01 1d8cA c.1.13.1 29325 1u2zA 433 8.68e+01 c.66.1.31 107626 2g6yA 217 8.68e+01 1g7jB 116 8.71e+01 1f3rB b.1.1.1 19933 1d7yA 408 8.81e+01 1d7yA c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1vl6A 388 8.94e+01 c.2.1.7,c.58.1.3 108724,108725 1pgl2 370 8.95e+01