# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yndA 165 4.25e-34 2cpl 165 4.47e-34 2cpl b.62.1.1 27420 1awqA 164 4.65e-34 2cpl b.62.1.1 27461 1awsA 164 4.81e-34 2cpl b.62.1.1 27431 1dywA 173 8.37e-34 2cpl b.62.1.1 27505 2bitX 165 8.47e-34 1a58 177 1.35e-33 2cpl b.62.1.1 27495 2cfeA 162 3.66e-33 1xo7A 166 4.71e-33 1qoiA 177 5.91e-33 2cpl b.62.1.1 27490 1zcxA 178 8.58e-33 2rmcA 182 9.68e-33 2cpl b.62.1.1 27491 1vdnA 162 2.03e-32 1ihgA 370 4.15e-32 2cpl a.118.8.1,b.62.1.1 62380,62381 1h0pA 182 9.70e-32 b.62.1.1 76450 2a2nA 176 6.92e-31 1xwnA 174 3.27e-30 1zkcA 197 4.26e-30 2fu0A 160 5.81e-29 2b71A 196 6.17e-29 1j2aA 166 8.26e-27 b.62.1.1 90779 1v9tA 166 8.96e-27 b.62.1.1 108451 1lopA 164 3.28e-26 2cpl b.62.1.1 27510 1mxiA 160 4.38e-01 c.116.1.1 79646 1zx8A 136 1.30e+00 1m3iA 471 4.77e+00 f.9.1.1 91178 2fug5 207 5.55e+00 1pfo 500 5.79e+00 1pfo f.9.1.1 43826 1mdbA 539 6.44e+00 e.23.1.1 79008 1dgnA 89 8.64e+00 1dgnA a.77.1.3 18436 2bzgA 232 1.04e+01 2bf6A 449 1.07e+01 1zq4A 693 1.15e+01 1pswA 348 1.23e+01 c.87.1.7 88287 1zoxA 113 1.25e+01 1isiA 265 1.28e+01 e.4.1.1 71394 1gggA 226 1.46e+01 1lst c.94.1.1 35817 1f7uA 607 1.55e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1wraA 308 1.73e+01 1icpA 376 1.74e+01 1oyc c.1.4.1 62270 1wi1A 126 1.96e+01 1u9lA 70 1.97e+01 a.60.4.2 107751 2gefA 217 2.01e+01 1vqvA 306 2.14e+01 1pg6A 243 2.18e+01 b.82.5.2 94673 2b4wA 315 2.43e+01 1vhoA 346 2.45e+01 b.49.3.1,c.56.5.4 100694,100695 2fdiA 211 2.47e+01 2bibA 547 2.52e+01 1fj2A 232 2.71e+01 1auoA c.69.1.14 34720 2ffjA 300 2.80e+01 1qmpA 130 2.85e+01 1dz3A c.23.1.1 31106 1dz3A 130 3.39e+01 1dz3A c.23.1.1 31105 2dd8S 202 3.40e+01 1vjvA 415 3.49e+01 d.3.1.9 108632 1rypI 222 3.56e+01 d.153.1.4 41877 1ufbA 127 3.62e+01 a.24.16.3 99331 1gpmA 525 3.91e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1t5rA 284 3.99e+01 f.6.1.1 106465 1k4nA 192 4.00e+01 d.32.1.5 72059 1a8l 226 4.06e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1fjjA 159 4.10e+01 1fjjA b.17.1.2 59852 1oktA 211 4.24e+01 a.45.1.1,c.47.1.5 93272,93273 1wdaA 670 4.32e+01 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 1q0eA 152 4.35e+01 b.1.8.1 95504 1kuuA 202 4.50e+01 d.153.2.1 73019 1cbjA 151 4.92e+01 1mfmA b.1.8.1 22213 1kzqA 289 4.94e+01 b.6.2.1,b.6.2.1 73374,73375 1yoxA 250 5.42e+01 1x24A 180 5.64e+01 2dexX 671 5.77e+01 1rypL 212 5.87e+01 d.153.1.4 41880 1zroA 602 6.15e+01 1e9pA 151 6.25e+01 1mfmA b.1.8.1 22215 1wdnA 226 6.43e+01 1lst c.94.1.1 35816 1sqsA 242 6.48e+01 c.23.5.5 98968 1w96A 554 6.78e+01 1q5qA 259 6.84e+01 d.153.1.4 95904 1k68A 140 7.01e+01 c.23.1.1 90943 2aaoA 166 7.26e+01 1xp3A 307 7.79e+01 1vlaA 150 7.92e+01 d.227.1.2 108735 1y42X 392 8.01e+01 1dl5A 317 8.10e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1b1cA 181 8.19e+01 1amoA c.23.5.2 31212 1ve9A 347 8.28e+01 c.4.1.2,d.16.1.3 100571,100572 2d1pC 95 8.55e+01 1m8uA 173 8.57e+01 b.11.1.1,b.11.1.1 91233,91234 1aa8A 347 8.58e+01 1an9A 2a9fA 398 8.68e+01 1zirA 173 8.77e+01 1qhiA 366 8.78e+01 1qhiA c.37.1.1 31860 1x88A 359 8.85e+01 1h7sA 365 8.88e+01 d.14.1.3,d.122.1.2 65705,65706 1tueA 212 8.98e+01 c.37.1.20 107323